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Editorial overview: Viral immunology before COVID-19.

Current opinion in virology

Oxenius A, Zajac AJ.
PMID: 34968790
Curr Opin Virol. 2021 Nov 24;52:217-219. doi: 10.1016/j.coviro.2021.11.010. Epub 2021 Nov 24.

No abstract available.

Cite
Oxenius A, Zajac AJ. Editorial overview: Viral immunology before COVID-19. Curr Opin Virol. 2021;52:217-219doi: 10.1016/j.coviro.2021.11.010.
Oxenius, A., & Zajac, A. J. (2021). Editorial overview: Viral immunology before COVID-19. Current opinion in virology, 52217-219. https://doi.org/10.1016/j.coviro.2021.11.010
Oxenius, Annette, and Zajac, Allan J. "Editorial overview: Viral immunology before COVID-19." Current opinion in virology vol. 52 (2021): 217-219. doi: https://doi.org/10.1016/j.coviro.2021.11.010
Oxenius A, Zajac AJ. Editorial overview: Viral immunology before COVID-19. Curr Opin Virol. 2021 Nov 24;52:217-219. doi: 10.1016/j.coviro.2021.11.010. Epub 2021 Nov 24. PMID: 34968790; PMCID: PMC8610889.
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Intercrypt sentinel macrophages tune antibacterial NF-κB responses in gut epithelial cells via TNF.

The Journal of experimental medicine

Hausmann A, Felmy B, Kunz L, Kroon S, Berthold DL, Ganz G, Sandu I, Nakamura T, Zangger NS, Zhang Y, Dolowschiak T, Fattinger SA, Furter M, Müller-Hauser AA, Barthel M, Vlantis K, Wachsmuth L, Kisielow J, Tortola L, Heide D, Heikenwälder M, Oxenius A, Kopf M, Schroeder T, Pasparakis M, Sellin ME, Hardt WD.
PMID: 34529751
J Exp Med. 2021 Nov 01;218(11). doi: 10.1084/jem.20210862. Epub 2021 Sep 16.

Intestinal epithelial cell (IEC) NF-κB signaling regulates the balance between mucosal homeostasis and inflammation. It is not fully understood which signals tune this balance and how bacterial exposure elicits the process. Pure LPS induces epithelial NF-κB activation in vivo....

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Hausmann A, Felmy B, Kunz L, et al. Intercrypt sentinel macrophages tune antibacterial NF-κB responses in gut epithelial cells via TNF. J Exp Med. 2021;218(11)doi: 10.1084/jem.20210862.
Hausmann, A., Felmy, B., Kunz, L., Kroon, S., Berthold, D. L., Ganz, G., Sandu, I., Nakamura, T., Zangger, N. S., Zhang, Y., Dolowschiak, T., Fattinger, S. A., Furter, M., Müller-Hauser, A. A., Barthel, M., Vlantis, K., Wachsmuth, L., Kisielow, J., Tortola, L., Heide, D., Heikenwälder, M., Oxenius, A., Kopf, M., Schroeder, T., Pasparakis, M., Sellin, M. E., & Hardt, W. D. (2021). Intercrypt sentinel macrophages tune antibacterial NF-κB responses in gut epithelial cells via TNF. The Journal of experimental medicine, 218(11), . https://doi.org/10.1084/jem.20210862
Hausmann, Annika, et al. "Intercrypt sentinel macrophages tune antibacterial NF-κB responses in gut epithelial cells via TNF." The Journal of experimental medicine vol. 218,11 (2021). doi: https://doi.org/10.1084/jem.20210862
Hausmann A, Felmy B, Kunz L, Kroon S, Berthold DL, Ganz G, Sandu I, Nakamura T, Zangger NS, Zhang Y, Dolowschiak T, Fattinger SA, Furter M, Müller-Hauser AA, Barthel M, Vlantis K, Wachsmuth L, Kisielow J, Tortola L, Heide D, Heikenwälder M, Oxenius A, Kopf M, Schroeder T, Pasparakis M, Sellin ME, Hardt WD. Intercrypt sentinel macrophages tune antibacterial NF-κB responses in gut epithelial cells via TNF. J Exp Med. 2021 Nov 01;218(11). doi: 10.1084/jem.20210862. Epub 2021 Sep 16. PMID: 34529751; PMCID: PMC8480669.
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Aquimarins, Peptide Antibiotics with Amino-Modified C-Termini from a Sponge-Derived Aquimarina sp. Bacterium.

Angewandte Chemie (International ed. in English)

Dieterich CL, Probst SI, Ueoka R, Sandu I, Schäfle D, Dal Molin M, Minas HA, Costa R, Oxenius A, Sander P, Piel J.
PMID: 34918870
Angew Chem Int Ed Engl. 2021 Dec 17; doi: 10.1002/anie.202115802. Epub 2021 Dec 17.

Genome mining and bioactivity studies suggested the sponge-derived bacterium Aquimarina sp. Aq135 as a producer of new antibiotics. Activity-guided isolation identified antibacterial peptides, named aquimarins, featuring a new scaffold with an unusual C-terminal amino group and chlorine moieties. Responsible...

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Dieterich CL, Probst SI, Ueoka R, et al. Aquimarins, Peptide Antibiotics with Amino-Modified C-Termini from a Sponge-Derived Aquimarina sp. Bacterium. Angew Chem Int Ed Engl. 2021;doi: 10.1002/anie.202115802.
Dieterich, C. L., Probst, S. I., Ueoka, R., Sandu, I., Schäfle, D., Dal Molin, M., Minas, H. A., Costa, R., Oxenius, A., Sander, P., & Piel, J. (2021). Aquimarins, Peptide Antibiotics with Amino-Modified C-Termini from a Sponge-Derived Aquimarina sp. Bacterium. Angewandte Chemie (International ed. in English), . https://doi.org/10.1002/anie.202115802
Dieterich, Cora L, et al. "Aquimarins, Peptide Antibiotics with Amino-Modified C-Termini from a Sponge-Derived Aquimarina sp. Bacterium." Angewandte Chemie (International ed. in English) vol. (2021). doi: https://doi.org/10.1002/anie.202115802
Dieterich CL, Probst SI, Ueoka R, Sandu I, Schäfle D, Dal Molin M, Minas HA, Costa R, Oxenius A, Sander P, Piel J. Aquimarins, Peptide Antibiotics with Amino-Modified C-Termini from a Sponge-Derived Aquimarina sp. Bacterium. Angew Chem Int Ed Engl. 2021 Dec 17; doi: 10.1002/anie.202115802. Epub 2021 Dec 17. PMID: 34918870.
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Right ventricular dilatation in patients with pulmonary regurgitation after repair of tetralogy of Fallot: How fast does it progress?.

Annals of pediatric cardiology

Hoelscher M, Bonassin F, Oxenius A, Seifert B, Leonardi B, Kellenberger CJ, Valsangiacomo Buechel ER.
PMID: 33311917
Ann Pediatr Cardiol. 2020 Oct-Dec;13(4):294-300. doi: 10.4103/apc.APC_140_19. Epub 2020 Jul 24.

OBJECTIVE: Pulmonary valve regurgitation (PR) and right ventricular (RV) dilatation are important residual findings after surgical repair of tetralogy of Fallot (TOF). We sought to describe the natural course of RV dilatation over time in patients with severe PR...

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Hoelscher M, Bonassin F, Oxenius A, et al. Right ventricular dilatation in patients with pulmonary regurgitation after repair of tetralogy of Fallot: How fast does it progress?. Ann Pediatr Cardiol. 2020;13(4):294-300doi: 10.4103/apc.APC_140_19.
Hoelscher, M., Bonassin, F., Oxenius, A., Seifert, B., Leonardi, B., Kellenberger, C. J., & Valsangiacomo Buechel, E. R. (2020). Right ventricular dilatation in patients with pulmonary regurgitation after repair of tetralogy of Fallot: How fast does it progress?. Annals of pediatric cardiology, 13(4), 294-300. https://doi.org/10.4103/apc.APC_140_19
Hoelscher, Martin, et al. "Right ventricular dilatation in patients with pulmonary regurgitation after repair of tetralogy of Fallot: How fast does it progress?." Annals of pediatric cardiology vol. 13,4 (2020): 294-300. doi: https://doi.org/10.4103/apc.APC_140_19
Hoelscher M, Bonassin F, Oxenius A, Seifert B, Leonardi B, Kellenberger CJ, Valsangiacomo Buechel ER. Right ventricular dilatation in patients with pulmonary regurgitation after repair of tetralogy of Fallot: How fast does it progress?. Ann Pediatr Cardiol. 2020 Oct-Dec;13(4):294-300. doi: 10.4103/apc.APC_140_19. Epub 2020 Jul 24. PMID: 33311917; PMCID: PMC7727895.
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Fibronectin fibers are highly tensed in healthy organs in contrast to tumors and virus-infected lymph nodes.

Matrix biology plus

Fonta CM, Arnoldini S, Jaramillo D, Moscaroli A, Oxenius A, Behe M, Vogel V.
PMID: 33543039
Matrix Biol Plus. 2020 Jul 17;8:100046. doi: 10.1016/j.mbplus.2020.100046. eCollection 2020 Nov.

The extracellular matrix (ECM) acts as reservoir for a plethora of growth factors and cytokines some of which are hypothesized to be regulated by ECM fiber tension. Yet, ECM fiber tension has never been mapped in healthy versus diseased...

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Fonta CM, Arnoldini S, Jaramillo D, et al. Fibronectin fibers are highly tensed in healthy organs in contrast to tumors and virus-infected lymph nodes. Matrix Biol Plus. 2020;8:100046doi: 10.1016/j.mbplus.2020.100046.
Fonta, C. M., Arnoldini, S., Jaramillo, D., Moscaroli, A., Oxenius, A., Behe, M., & Vogel, V. (2020). Fibronectin fibers are highly tensed in healthy organs in contrast to tumors and virus-infected lymph nodes. Matrix biology plus, 8100046. https://doi.org/10.1016/j.mbplus.2020.100046
Fonta, Charlotte M, et al. "Fibronectin fibers are highly tensed in healthy organs in contrast to tumors and virus-infected lymph nodes." Matrix biology plus vol. 8 (2020): 100046. doi: https://doi.org/10.1016/j.mbplus.2020.100046
Fonta CM, Arnoldini S, Jaramillo D, Moscaroli A, Oxenius A, Behe M, Vogel V. Fibronectin fibers are highly tensed in healthy organs in contrast to tumors and virus-infected lymph nodes. Matrix Biol Plus. 2020 Jul 17;8:100046. doi: 10.1016/j.mbplus.2020.100046. eCollection 2020 Nov. PMID: 33543039; PMCID: PMC7852196.
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Editorial overview: Viral immunology before COVID-19.

Current opinion in virology

Oxenius A, Zajac AJ.
PMID: 34968790
Curr Opin Virol. 2021 Nov 24;52:217-219. doi: 10.1016/j.coviro.2021.11.010. Epub 2021 Nov 24.

No abstract available.

Cite
Oxenius A, Zajac AJ. Editorial overview: Viral immunology before COVID-19. Curr Opin Virol. 2021;52:217-219doi: 10.1016/j.coviro.2021.11.010.
Oxenius, A., & Zajac, A. J. (2021). Editorial overview: Viral immunology before COVID-19. Current opinion in virology, 52217-219. https://doi.org/10.1016/j.coviro.2021.11.010
Oxenius, Annette, and Zajac, Allan J. "Editorial overview: Viral immunology before COVID-19." Current opinion in virology vol. 52 (2021): 217-219. doi: https://doi.org/10.1016/j.coviro.2021.11.010
Oxenius A, Zajac AJ. Editorial overview: Viral immunology before COVID-19. Curr Opin Virol. 2021 Nov 24;52:217-219. doi: 10.1016/j.coviro.2021.11.010. Epub 2021 Nov 24. PMID: 34968790; PMCID: PMC8610889.
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Recognition and Regulation of T Cells by NK Cells.

Frontiers in immunology

Pallmer K, Oxenius A.
PMID: 27446081
Front Immunol. 2016 Jun 24;7:251. doi: 10.3389/fimmu.2016.00251. eCollection 2016.

Regulation of T cell responses by innate lymphoid cells (ILCs) is increasingly documented and studied. Direct or indirect crosstalk between ILCs and T cells early during and after T cell activation can affect their differentiation, polarization, and survival. Natural...

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Pallmer K, Oxenius A. Recognition and Regulation of T Cells by NK Cells. Front Immunol. 2016;7:251doi: 10.3389/fimmu.2016.00251.
Pallmer, K., & Oxenius, A. (2016). Recognition and Regulation of T Cells by NK Cells. Frontiers in immunology, 7251. https://doi.org/10.3389/fimmu.2016.00251
Pallmer, Katharina, and Oxenius, Annette. "Recognition and Regulation of T Cells by NK Cells." Frontiers in immunology vol. 7 (2016): 251. doi: https://doi.org/10.3389/fimmu.2016.00251
Pallmer K, Oxenius A. Recognition and Regulation of T Cells by NK Cells. Front Immunol. 2016 Jun 24;7:251. doi: 10.3389/fimmu.2016.00251. eCollection 2016. PMID: 27446081; PMCID: PMC4919350.
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Light-mediated discovery of surfaceome nanoscale organization and intercellular receptor interaction networks.

Nature communications

Müller M, Gräbnitz F, Barandun N, Shen Y, Wendt F, Steiner SN, Severin Y, Vetterli SU, Mondal M, Prudent JR, Hofmann R, van Oostrum M, Sarott RC, Nesvizhskii AI, Carreira EM, Bode JW, Snijder B, Robinson JA, Loessner MJ, Oxenius A, Wollscheid B.
PMID: 34857745
Nat Commun. 2021 Dec 02;12(1):7036. doi: 10.1038/s41467-021-27280-x.

The molecular nanoscale organization of the surfaceome is a fundamental regulator of cellular signaling in health and disease. Technologies for mapping the spatial relationships of cell surface receptors and their extracellular signaling synapses would unlock theranostic opportunities to target...

Cite
Müller M, Gräbnitz F, Barandun N, et al. Light-mediated discovery of surfaceome nanoscale organization and intercellular receptor interaction networks. Nat Commun. 2021;12(1):7036doi: 10.1038/s41467-021-27280-x.
Müller, M., Gräbnitz, F., Barandun, N., Shen, Y., Wendt, F., Steiner, S. N., Severin, Y., Vetterli, S. U., Mondal, M., Prudent, J. R., Hofmann, R., van Oostrum, M., Sarott, R. C., Nesvizhskii, A. I., Carreira, E. M., Bode, J. W., Snijder, B., Robinson, J. A., Loessner, M. J., Oxenius, A., & Wollscheid, B. (2021). Light-mediated discovery of surfaceome nanoscale organization and intercellular receptor interaction networks. Nature communications, 12(1), 7036. https://doi.org/10.1038/s41467-021-27280-x
Müller, Maik, et al. "Light-mediated discovery of surfaceome nanoscale organization and intercellular receptor interaction networks." Nature communications vol. 12,1 (2021): 7036. doi: https://doi.org/10.1038/s41467-021-27280-x
Müller M, Gräbnitz F, Barandun N, Shen Y, Wendt F, Steiner SN, Severin Y, Vetterli SU, Mondal M, Prudent JR, Hofmann R, van Oostrum M, Sarott RC, Nesvizhskii AI, Carreira EM, Bode JW, Snijder B, Robinson JA, Loessner MJ, Oxenius A, Wollscheid B. Light-mediated discovery of surfaceome nanoscale organization and intercellular receptor interaction networks. Nat Commun. 2021 Dec 02;12(1):7036. doi: 10.1038/s41467-021-27280-x. PMID: 34857745; PMCID: PMC8639842.
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Influenza- and MCMV-induced memory CD8 T cells control respiratory vaccinia virus infection despite residence in distinct anatomical niches.

Mucosal immunology

Welten SPM, Oderbolz J, Yilmaz V, Bidgood SR, Gould V, Mercer J, Spörri R, Oxenius A.
PMID: 33479479
Mucosal Immunol. 2021 May;14(3):728-742. doi: 10.1038/s41385-020-00373-4. Epub 2021 Jan 21.

Induction of memory CD8 T cells residing in peripheral tissues is of interest for T cell-based vaccines as these cells are located at mucosal and barrier sites and can immediately exert effector functions, thus providing protection in case of...

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Welten SPM, Oderbolz J, Yilmaz V, et al. Influenza- and MCMV-induced memory CD8 T cells control respiratory vaccinia virus infection despite residence in distinct anatomical niches. Mucosal Immunol. 2021;14(3):728-742doi: 10.1038/s41385-020-00373-4.
Welten, S. P. M., Oderbolz, J., Yilmaz, V., Bidgood, S. R., Gould, V., Mercer, J., Spörri, R., & Oxenius, A. (2021). Influenza- and MCMV-induced memory CD8 T cells control respiratory vaccinia virus infection despite residence in distinct anatomical niches. Mucosal immunology, 14(3), 728-742. https://doi.org/10.1038/s41385-020-00373-4
Welten, Suzanne P M, et al. "Influenza- and MCMV-induced memory CD8 T cells control respiratory vaccinia virus infection despite residence in distinct anatomical niches." Mucosal immunology vol. 14,3 (2021): 728-742. doi: https://doi.org/10.1038/s41385-020-00373-4
Welten SPM, Oderbolz J, Yilmaz V, Bidgood SR, Gould V, Mercer J, Spörri R, Oxenius A. Influenza- and MCMV-induced memory CD8 T cells control respiratory vaccinia virus infection despite residence in distinct anatomical niches. Mucosal Immunol. 2021 May;14(3):728-742. doi: 10.1038/s41385-020-00373-4. Epub 2021 Jan 21. PMID: 33479479; PMCID: PMC8075924.
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Publisher Correction: Tumor-necrosis factor impairs CD4.

Nature immunology

Beyer M, Abdullah Z, Chemnitz JM, Maisel D, Sander J, Lehmann C, Thabet Y, Shinde PV, Schmidleithner L, Köhne M, Trebicka J, Schierwagen R, Hofmann A, Popov A, Lang KS, Oxenius A, Buch T, Kurts C, Heikenwalder M, Fätkenheuer G, Lang PA, Hartmann P, Knolle PA, Schultze JL, Khan MW, Auvinen A.
PMID: 32620862
Nat Immunol. 2020 Sep;21(9):1135. doi: 10.1038/s41590-020-0749-7.

An amendment to this paper has been published and can be accessed via a link at the top of the paper.

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Beyer M, Abdullah Z, Chemnitz JM, et al. Publisher Correction: Tumor-necrosis factor impairs CD4. Nat Immunol. 2020;21(9):1135doi: 10.1038/s41590-020-0749-7.
Beyer, M., Abdullah, Z., Chemnitz, J. M., Maisel, D., Sander, J., Lehmann, C., Thabet, Y., Shinde, P. V., Schmidleithner, L., Köhne, M., Trebicka, J., Schierwagen, R., Hofmann, A., Popov, A., Lang, K. S., Oxenius, A., Buch, T., Kurts, C., Heikenwalder, M., Fätkenheuer, G., Lang, P. A., Hartmann, P., Knolle, P. A., Schultze, J. L., Khan, M. W., & Auvinen, A. (2020). Publisher Correction: Tumor-necrosis factor impairs CD4. Nature immunology, 21(9), 1135. https://doi.org/10.1038/s41590-020-0749-7
Beyer, Marc, et al. "Publisher Correction: Tumor-necrosis factor impairs CD4." Nature immunology vol. 21,9 (2020): 1135. doi: https://doi.org/10.1038/s41590-020-0749-7
Beyer M, Abdullah Z, Chemnitz JM, Maisel D, Sander J, Lehmann C, Thabet Y, Shinde PV, Schmidleithner L, Köhne M, Trebicka J, Schierwagen R, Hofmann A, Popov A, Lang KS, Oxenius A, Buch T, Kurts C, Heikenwalder M, Fätkenheuer G, Lang PA, Hartmann P, Knolle PA, Schultze JL, Khan MW, Auvinen A. Publisher Correction: Tumor-necrosis factor impairs CD4. Nat Immunol. 2020 Sep;21(9):1135. doi: 10.1038/s41590-020-0749-7. PMID: 32620862.
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Light-mediated discovery of surfaceome nanoscale organization and intercellular receptor interaction networks.

Nature communications

Müller M, Gräbnitz F, Barandun N, Shen Y, Wendt F, Steiner SN, Severin Y, Vetterli SU, Mondal M, Prudent JR, Hofmann R, van Oostrum M, Sarott RC, Nesvizhskii AI, Carreira EM, Bode JW, Snijder B, Robinson JA, Loessner MJ, Oxenius A, Wollscheid B.
PMID: 34857745
Nat Commun. 2021 Dec 02;12(1):7036. doi: 10.1038/s41467-021-27280-x.

The molecular nanoscale organization of the surfaceome is a fundamental regulator of cellular signaling in health and disease. Technologies for mapping the spatial relationships of cell surface receptors and their extracellular signaling synapses would unlock theranostic opportunities to target...

Cite
Müller M, Gräbnitz F, Barandun N, et al. Light-mediated discovery of surfaceome nanoscale organization and intercellular receptor interaction networks. Nat Commun. 2021;12(1):7036doi: 10.1038/s41467-021-27280-x.
Müller, M., Gräbnitz, F., Barandun, N., Shen, Y., Wendt, F., Steiner, S. N., Severin, Y., Vetterli, S. U., Mondal, M., Prudent, J. R., Hofmann, R., van Oostrum, M., Sarott, R. C., Nesvizhskii, A. I., Carreira, E. M., Bode, J. W., Snijder, B., Robinson, J. A., Loessner, M. J., Oxenius, A., & Wollscheid, B. (2021). Light-mediated discovery of surfaceome nanoscale organization and intercellular receptor interaction networks. Nature communications, 12(1), 7036. https://doi.org/10.1038/s41467-021-27280-x
Müller, Maik, et al. "Light-mediated discovery of surfaceome nanoscale organization and intercellular receptor interaction networks." Nature communications vol. 12,1 (2021): 7036. doi: https://doi.org/10.1038/s41467-021-27280-x
Müller M, Gräbnitz F, Barandun N, Shen Y, Wendt F, Steiner SN, Severin Y, Vetterli SU, Mondal M, Prudent JR, Hofmann R, van Oostrum M, Sarott RC, Nesvizhskii AI, Carreira EM, Bode JW, Snijder B, Robinson JA, Loessner MJ, Oxenius A, Wollscheid B. Light-mediated discovery of surfaceome nanoscale organization and intercellular receptor interaction networks. Nat Commun. 2021 Dec 02;12(1):7036. doi: 10.1038/s41467-021-27280-x. PMID: 34857745; PMCID: PMC8639842.
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Single B cell technologies for monoclonal antibody discovery.

Trends in immunology

Pedrioli A, Oxenius A.
PMID: 34743921
Trends Immunol. 2021 Dec;42(12):1143-1158. doi: 10.1016/j.it.2021.10.008. Epub 2021 Nov 04.

Monoclonal antibodies (mAbs) are often selected from antigen-specific single B cells derived from different hosts, which are notably short-lived in ex vivo culture conditions and hence, arduous to interrogate. The development of several new techniques and protocols has facilitated...

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Pedrioli A, Oxenius A. Single B cell technologies for monoclonal antibody discovery. Trends Immunol. 2021;42(12):1143-1158doi: 10.1016/j.it.2021.10.008.
Pedrioli, A., & Oxenius, A. (2021). Single B cell technologies for monoclonal antibody discovery. Trends in immunology, 42(12), 1143-1158. https://doi.org/10.1016/j.it.2021.10.008
Pedrioli, Alessandro, and Oxenius, Annette. "Single B cell technologies for monoclonal antibody discovery." Trends in immunology vol. 42,12 (2021): 1143-1158. doi: https://doi.org/10.1016/j.it.2021.10.008
Pedrioli A, Oxenius A. Single B cell technologies for monoclonal antibody discovery. Trends Immunol. 2021 Dec;42(12):1143-1158. doi: 10.1016/j.it.2021.10.008. Epub 2021 Nov 04. PMID: 34743921.
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