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Showing 1 to 12 of 134 entries
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Complete Genome Sequences of Six South African Rabies Viruses.

Genome announcements

Sabeta C, Phahladira B, Marston DA, Wise EL, Ellis RJ, Fooks AR.
PMID: 26430028
Genome Announc. 2015 Oct 01;3(5). doi: 10.1128/genomeA.01085-15.

South African rabies viruses (RABVs) from dogs and jackals (canid viruses) are highly related and most likely originated from a single progenitor. RABV is the cause of most global human rabies cases. The complete genome sequences of 3 RABVs...

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Sabeta C, Phahladira B, Marston DA, et al. Complete Genome Sequences of Six South African Rabies Viruses. Genome Announc. 2015;3(5)doi: 10.1128/genomeA.01085-15.
Sabeta, C., Phahladira, B., Marston, D. A., Wise, E. L., Ellis, R. J., & Fooks, A. R. (2015). Complete Genome Sequences of Six South African Rabies Viruses. Genome announcements, 3(5), . https://doi.org/10.1128/genomeA.01085-15
Sabeta, Claude, et al. "Complete Genome Sequences of Six South African Rabies Viruses." Genome announcements vol. 3,5 (2015). doi: https://doi.org/10.1128/genomeA.01085-15
Sabeta C, Phahladira B, Marston DA, Wise EL, Ellis RJ, Fooks AR. Complete Genome Sequences of Six South African Rabies Viruses. Genome Announc. 2015 Oct 01;3(5). doi: 10.1128/genomeA.01085-15. PMID: 26430028; PMCID: PMC4591300.
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Can Evolutionary-based Brain Map Be Used as a Complementary Diagnostic Tool with fMRI, CT and PET for Schizophrenic Patients?.

Journal of biomedical physics & engineering

Boostani R, Sabeti M.
PMID: 28580339
J Biomed Phys Eng. 2017 Jun 01;7(2):169-180. eCollection 2017 Jun.

OBJECTIVE: In this research, a new approach termed as "evolutionary-based brain map" is presented as a diagnostic tool to classify schizophrenic and control subjects by distinguishing their electroencephalogram (EEG) features.METHODS: Particle swarm optimization (PSO) is employed to find discriminative...

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Boostani R, Sabeti M. Can Evolutionary-based Brain Map Be Used as a Complementary Diagnostic Tool with fMRI, CT and PET for Schizophrenic Patients?. J Biomed Phys Eng. 2017;7(2):169-180
Boostani, R., & Sabeti, M. (2017). Can Evolutionary-based Brain Map Be Used as a Complementary Diagnostic Tool with fMRI, CT and PET for Schizophrenic Patients?. Journal of biomedical physics & engineering, 7(2), 169-180.
Boostani, R, and Sabeti, M. "Can Evolutionary-based Brain Map Be Used as a Complementary Diagnostic Tool with fMRI, CT and PET for Schizophrenic Patients?." Journal of biomedical physics & engineering vol. 7,2 (2017): 169-180.
Boostani R, Sabeti M. Can Evolutionary-based Brain Map Be Used as a Complementary Diagnostic Tool with fMRI, CT and PET for Schizophrenic Patients?. J Biomed Phys Eng. 2017 Jun 01;7(2):169-180. eCollection 2017 Jun. PMID: 28580339; PMCID: PMC5447254.
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ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus.

F1000Research

Karp PD, Berger B, Kovats D, Lengauer T, Linial M, Sabeti P, Hide W, Rost B.
PMID: 26097686
F1000Res. 2015 Jan 15;4:12. doi: 10.12688/f1000research.6038.1. eCollection 2015.

Speed is of the essence in combating Ebola; thus, computational approaches should form a significant component of Ebola research. As for the development of any modern drug, computational biology is uniquely positioned to contribute through comparative analysis of the...

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Karp PD, Berger B, Kovats D, et al. ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus. F1000Res. 2015;4:12doi: 10.12688/f1000research.6038.1.
Karp, P. D., Berger, B., Kovats, D., Lengauer, T., Linial, M., Sabeti, P., Hide, W., & Rost, B. (2015). ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus. F1000Research, 412. https://doi.org/10.12688/f1000research.6038.1
Karp, Peter D, et al. "ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus." F1000Research vol. 4 (2015): 12. doi: https://doi.org/10.12688/f1000research.6038.1
Karp PD, Berger B, Kovats D, Lengauer T, Linial M, Sabeti P, Hide W, Rost B. ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus. F1000Res. 2015 Jan 15;4:12. doi: 10.12688/f1000research.6038.1. eCollection 2015. PMID: 26097686; PMCID: PMC4457108.
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Correction: Unconventional Gas and Oil Drilling Is Associated with Increased Hospital Utilization Rates.

PloS one

Jemielita T, Gerton GL, Neidell M, Chillrud S, Yan B, Stute M, Howarth M, Saberi P, Fausti N, Penning TM, Roy J, Propert KJ, Panettieri RA.
PMID: 26317358
PLoS One. 2015 Aug 28;10(8):e0137371. doi: 10.1371/journal.pone.0137371. eCollection 2015.

No abstract available.

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Jemielita T, Gerton GL, Neidell M, et al. Correction: Unconventional Gas and Oil Drilling Is Associated with Increased Hospital Utilization Rates. PLoS One. 2015;10(8):e0137371doi: 10.1371/journal.pone.0137371.
Jemielita, T., Gerton, G. L., Neidell, M., Chillrud, S., Yan, B., Stute, M., Howarth, M., Saberi, P., Fausti, N., Penning, T. M., Roy, J., Propert, K. J., & Panettieri, R. A. (2015). Correction: Unconventional Gas and Oil Drilling Is Associated with Increased Hospital Utilization Rates. PloS one, 10(8), e0137371. https://doi.org/10.1371/journal.pone.0137371
Jemielita, Thomas, et al. "Correction: Unconventional Gas and Oil Drilling Is Associated with Increased Hospital Utilization Rates." PloS one vol. 10,8 (2015): e0137371. doi: https://doi.org/10.1371/journal.pone.0137371
Jemielita T, Gerton GL, Neidell M, Chillrud S, Yan B, Stute M, Howarth M, Saberi P, Fausti N, Penning TM, Roy J, Propert KJ, Panettieri RA. Correction: Unconventional Gas and Oil Drilling Is Associated with Increased Hospital Utilization Rates. PLoS One. 2015 Aug 28;10(8):e0137371. doi: 10.1371/journal.pone.0137371. eCollection 2015. PMID: 26317358; PMCID: PMC4552724.
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Evaluation of the effects of galbanic acid from Ferula szowitsiana and conferol from F. badrakema, as modulators of multi-drug resistance in clinical isolates of Escherichia coli and Staphylococcus aureus.

Research in pharmaceutical sciences

Fazly Bazzaz BS, Iranshahi M, Naderinasab M, Hajian S, Sabeti Z, Masumi E.
PMID: 21589765
Res Pharm Sci. 2010 Jan;5(1):21-8.

Galbanic acid, a sesquiterpene coumarin from Ferula szowitsiana, and conferol, another sesquiterpene coumarin from F. badrakema, were evaluated for their effects on the reversal of multi-drug resistance in clinical isolates of Staphylococcus aureus and Escherichia coli, respectively. Neither galbanic...

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Fazly Bazzaz BS, Iranshahi M, Naderinasab M, et al. Evaluation of the effects of galbanic acid from Ferula szowitsiana and conferol from F. badrakema, as modulators of multi-drug resistance in clinical isolates of Escherichia coli and Staphylococcus aureus. Res Pharm Sci. 2010;5(1):21-8
Fazly Bazzaz, B. S., Iranshahi, M., Naderinasab, M., Hajian, S., Sabeti, Z., & Masumi, E. (2010). Evaluation of the effects of galbanic acid from Ferula szowitsiana and conferol from F. badrakema, as modulators of multi-drug resistance in clinical isolates of Escherichia coli and Staphylococcus aureus. Research in pharmaceutical sciences, 5(1), 21-8.
Fazly Bazzaz, B S, et al. "Evaluation of the effects of galbanic acid from Ferula szowitsiana and conferol from F. badrakema, as modulators of multi-drug resistance in clinical isolates of Escherichia coli and Staphylococcus aureus." Research in pharmaceutical sciences vol. 5,1 (2010): 21-8.
Fazly Bazzaz BS, Iranshahi M, Naderinasab M, Hajian S, Sabeti Z, Masumi E. Evaluation of the effects of galbanic acid from Ferula szowitsiana and conferol from F. badrakema, as modulators of multi-drug resistance in clinical isolates of Escherichia coli and Staphylococcus aureus. Res Pharm Sci. 2010 Jan;5(1):21-8. PMID: 21589765; PMCID: PMC3093094.
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The Effect of Adenotonsillectomy on Children's Quality of life.

Iranian journal of otorhinolaryngology

Zojaji R, Mirzadeh M, Mazloum Farsi Baf M, Khorashadizadeh M, Sabeti HR.
PMID: 25320696
Iran J Otorhinolaryngol. 2014 Oct;26(77):199-205.

INTRODUCTION: Adenoid hypertrophy is the most common cause of chronic airway obstruction in children. The aim of this study was to evaluate the effect of adenotonsillectomy on sleep and behavioral disorders in children with adenotonsillar hypertrophy.MATERIALS AND METHODS: In...

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Zojaji R, Mirzadeh M, Mazloum Farsi Baf M, et al. The Effect of Adenotonsillectomy on Children's Quality of life. Iran J Otorhinolaryngol. 2014;26(77):199-205
Zojaji, R., Mirzadeh, M., Mazloum Farsi Baf, M., Khorashadizadeh, M., & Sabeti, H. R. (2014). The Effect of Adenotonsillectomy on Children's Quality of life. Iranian journal of otorhinolaryngology, 26(77), 199-205.
Zojaji, Ramin, et al. "The Effect of Adenotonsillectomy on Children's Quality of life." Iranian journal of otorhinolaryngology vol. 26,77 (2014): 199-205.
Zojaji R, Mirzadeh M, Mazloum Farsi Baf M, Khorashadizadeh M, Sabeti HR. The Effect of Adenotonsillectomy on Children's Quality of life. Iran J Otorhinolaryngol. 2014 Oct;26(77):199-205. PMID: 25320696; PMCID: PMC4196442.
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Interferon beta-1b-induced thrombotic thrombocytopenic purpura-hemolytic uremic syndrome (TTP-HUS) in a patient treated for multiple sclerosis: A case report.

Iranian journal of neurology

Etemadifar M, Sabeti F, Salari M.
PMID: 30210736
Iran J Neurol. 2018 Apr 04;17(2):91-94.

No abstract available.

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Etemadifar M, Sabeti F, Salari M. Interferon beta-1b-induced thrombotic thrombocytopenic purpura-hemolytic uremic syndrome (TTP-HUS) in a patient treated for multiple sclerosis: A case report. Iran J Neurol. 2018;17(2):91-94
Etemadifar, M., Sabeti, F., & Salari, M. (2018). Interferon beta-1b-induced thrombotic thrombocytopenic purpura-hemolytic uremic syndrome (TTP-HUS) in a patient treated for multiple sclerosis: A case report. Iranian journal of neurology, 17(2), 91-94.
Etemadifar, Masoud, et al. "Interferon beta-1b-induced thrombotic thrombocytopenic purpura-hemolytic uremic syndrome (TTP-HUS) in a patient treated for multiple sclerosis: A case report." Iranian journal of neurology vol. 17,2 (2018): 91-94.
Etemadifar M, Sabeti F, Salari M. Interferon beta-1b-induced thrombotic thrombocytopenic purpura-hemolytic uremic syndrome (TTP-HUS) in a patient treated for multiple sclerosis: A case report. Iran J Neurol. 2018 Apr 04;17(2):91-94. PMID: 30210736; PMCID: PMC6131335.
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Novel methods to estimate antiretroviral adherence: protocol for a longitudinal study.

Patient preference and adherence

Saberi P, Ming K, Legnitto D, Neilands TB, Gandhi M, Johnson MO.
PMID: 29950816
Patient Prefer Adherence. 2018 Jun 18;12:1033-1042. doi: 10.2147/PPA.S166380. eCollection 2018.

BACKGROUND: There is currently no gold standard for assessing antiretroviral (ARV) adherence, so researchers often resort to the most feasible and cost-effective methods possible (eg, self-report), which may be biased or inaccurate. The goal of our study was to...

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Saberi P, Ming K, Legnitto D, et al. Novel methods to estimate antiretroviral adherence: protocol for a longitudinal study. Patient Prefer Adherence. 2018;12:1033-1042doi: 10.2147/PPA.S166380.
Saberi, P., Ming, K., Legnitto, D., Neilands, T. B., Gandhi, M., & Johnson, M. O. (2018). Novel methods to estimate antiretroviral adherence: protocol for a longitudinal study. Patient preference and adherence, 121033-1042. https://doi.org/10.2147/PPA.S166380
Saberi, Parya, et al. "Novel methods to estimate antiretroviral adherence: protocol for a longitudinal study." Patient preference and adherence vol. 12 (2018): 1033-1042. doi: https://doi.org/10.2147/PPA.S166380
Saberi P, Ming K, Legnitto D, Neilands TB, Gandhi M, Johnson MO. Novel methods to estimate antiretroviral adherence: protocol for a longitudinal study. Patient Prefer Adherence. 2018 Jun 18;12:1033-1042. doi: 10.2147/PPA.S166380. eCollection 2018. PMID: 29950816; PMCID: PMC6014386.
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Time to Engage Young People in HIV Cure Research.

AIDS research and human retroviruses

Saberi P, Campbell CK, Venegas M, Dubé K.
PMID: 33677996
AIDS Res Hum Retroviruses. 2022 Jan;38(1):2-4. doi: 10.1089/AID.2020.0268. Epub 2021 Apr 01.

Antiretroviral treatments successfully suppress and control HIV but cannot eliminate the virus. In recent years, much research has gone into developing a cure for HIV. This research comes with significant risks and limited clinical benefits to study participants. Little...

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Saberi P, Campbell CK, Venegas M, et al. Time to Engage Young People in HIV Cure Research. AIDS Res Hum Retroviruses. 2021;38(1):2-4doi: 10.1089/AID.2020.0268.
Saberi, P., Campbell, C. K., Venegas, M., & Dubé, K. (2022). Time to Engage Young People in HIV Cure Research. AIDS research and human retroviruses, 38(1), 2-4. https://doi.org/10.1089/AID.2020.0268
Saberi, Parya, et al. "Time to Engage Young People in HIV Cure Research." AIDS research and human retroviruses vol. 38,1 (2022): 2-4. doi: https://doi.org/10.1089/AID.2020.0268
Saberi P, Campbell CK, Venegas M, Dubé K. Time to Engage Young People in HIV Cure Research. AIDS Res Hum Retroviruses. 2022 Jan;38(1):2-4. doi: 10.1089/AID.2020.0268. Epub 2021 Apr 01. PMID: 33677996.
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Frozen versus fresh corneal graft carriers in Boston keratoprosthesis surgery: 10-year outcomes.

Canadian journal of ophthalmology. Journal canadien d'ophtalmologie

Sabeti S, Daoud R, Robert MC, Harissi-Dagher M.
PMID: 33781724
Can J Ophthalmol. 2021 Mar 26; doi: 10.1016/j.jcjo.2021.02.033. Epub 2021 Mar 26.

OBJECTIVE: To compare 10-year clinical outcomes of frozen versus fresh corneal graft carriers for the Boston Keratoprosthesis type 1 (KPro).DESIGN: Prospective, non-masked randomized controlled trial.PARTICIPANTS: Nineteen eyes of 19 patients having undergone Boston KPro type 1 implantation using a...

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Sabeti S, Daoud R, Robert MC, et al. Frozen versus fresh corneal graft carriers in Boston keratoprosthesis surgery: 10-year outcomes. Can J Ophthalmol. 2021;doi: 10.1016/j.jcjo.2021.02.033.
Sabeti, S., Daoud, R., Robert, M. C., & Harissi-Dagher, M. (2021). Frozen versus fresh corneal graft carriers in Boston keratoprosthesis surgery: 10-year outcomes. Canadian journal of ophthalmology. Journal canadien d'ophtalmologie, . https://doi.org/10.1016/j.jcjo.2021.02.033
Sabeti, Saama, et al. "Frozen versus fresh corneal graft carriers in Boston keratoprosthesis surgery: 10-year outcomes." Canadian journal of ophthalmology. Journal canadien d'ophtalmologie vol. (2021). doi: https://doi.org/10.1016/j.jcjo.2021.02.033
Sabeti S, Daoud R, Robert MC, Harissi-Dagher M. Frozen versus fresh corneal graft carriers in Boston keratoprosthesis surgery: 10-year outcomes. Can J Ophthalmol. 2021 Mar 26; doi: 10.1016/j.jcjo.2021.02.033. Epub 2021 Mar 26. PMID: 33781724.
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Equipment-free detection of SARS-CoV-2 and Variants of Concern using Cas13.

medRxiv : the preprint server for health sciences

Arizti-Sanz J, Bradley AD, Zhang YB, Boehm CK, Freije CA, Grunberg ME, Kosoko-Thoroddsen TF, Welch NL, Pillai PP, Mantena S, Kim G, Uwanibe JN, John OG, Eromon PE, Kocher G, Gross R, Lee JS, Hensley LE, Happi CT, Johnson J, Sabeti PC, Myhrvold C.
PMID: 34751276
medRxiv. 2021 Nov 02; doi: 10.1101/2021.11.01.21265764.

The COVID-19 pandemic, and the recent rise and widespread transmission of SARS-CoV-2 Variants of Concern (VOCs), have demonstrated the need for ubiquitous nucleic acid testing outside of centralized clinical laboratories. Here, we develop SHINEv2, a Cas13-based nucleic acid diagnostic...

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Arizti-Sanz J, Bradley AD, Zhang YB, et al. Equipment-free detection of SARS-CoV-2 and Variants of Concern using Cas13. medRxiv. 2021;doi: 10.1101/2021.11.01.21265764.
Arizti-Sanz, J., Bradley, A. D., Zhang, Y. B., Boehm, C. K., Freije, C. A., Grunberg, M. E., Kosoko-Thoroddsen, T. F., Welch, N. L., Pillai, P. P., Mantena, S., Kim, G., Uwanibe, J. N., John, O. G., Eromon, P. E., Kocher, G., Gross, R., Lee, J. S., Hensley, L. E., Happi, C. T., Johnson, J., Sabeti, P. C., & Myhrvold, C. (2021). Equipment-free detection of SARS-CoV-2 and Variants of Concern using Cas13. medRxiv : the preprint server for health sciences, . https://doi.org/10.1101/2021.11.01.21265764
Arizti-Sanz, Jon, et al. "Equipment-free detection of SARS-CoV-2 and Variants of Concern using Cas13." medRxiv : the preprint server for health sciences vol. (2021). doi: https://doi.org/10.1101/2021.11.01.21265764
Arizti-Sanz J, Bradley AD, Zhang YB, Boehm CK, Freije CA, Grunberg ME, Kosoko-Thoroddsen TF, Welch NL, Pillai PP, Mantena S, Kim G, Uwanibe JN, John OG, Eromon PE, Kocher G, Gross R, Lee JS, Hensley LE, Happi CT, Johnson J, Sabeti PC, Myhrvold C. Equipment-free detection of SARS-CoV-2 and Variants of Concern using Cas13. medRxiv. 2021 Nov 02; doi: 10.1101/2021.11.01.21265764. PMID: 34751276; PMCID: PMC8575147.
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Synthetic DNA spike-ins (SDSIs) enable sample tracking and detection of inter-sample contamination in SARS-CoV-2 sequencing workflows.

Nature microbiology

Lagerborg KA, Normandin E, Bauer MR, Adams G, Figueroa K, Loreth C, Gladden-Young A, Shaw BM, Pearlman LR, Berenzy D, Dewey HB, Kales S, Dobbins ST, Shenoy ES, Hooper D, Pierce VM, Zachary KC, Park DJ, MacInnis BL, Tewhey R, Lemieux JE, Sabeti PC, Reilly SK, Siddle KJ.
PMID: 34907347
Nat Microbiol. 2022 Jan;7(1):108-119. doi: 10.1038/s41564-021-01019-2. Epub 2021 Dec 14.

The global spread and continued evolution of SARS-CoV-2 has driven an unprecedented surge in viral genomic surveillance. Amplicon-based sequencing methods provide a sensitive, low-cost and rapid approach but suffer a high potential for contamination, which can undermine laboratory processes...

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Lagerborg KA, Normandin E, Bauer MR, et al. Synthetic DNA spike-ins (SDSIs) enable sample tracking and detection of inter-sample contamination in SARS-CoV-2 sequencing workflows. Nat Microbiol. 2021;7(1):108-119doi: 10.1038/s41564-021-01019-2.
Lagerborg, K. A., Normandin, E., Bauer, M. R., Adams, G., Figueroa, K., Loreth, C., Gladden-Young, A., Shaw, B. M., Pearlman, L. R., Berenzy, D., Dewey, H. B., Kales, S., Dobbins, S. T., Shenoy, E. S., Hooper, D., Pierce, V. M., Zachary, K. C., Park, D. J., MacInnis, B. L., Tewhey, R., Lemieux, J. E., Sabeti, P. C., Reilly, S. K., & Siddle, K. J. (2022). Synthetic DNA spike-ins (SDSIs) enable sample tracking and detection of inter-sample contamination in SARS-CoV-2 sequencing workflows. Nature microbiology, 7(1), 108-119. https://doi.org/10.1038/s41564-021-01019-2
Lagerborg, Kim A, et al. "Synthetic DNA spike-ins (SDSIs) enable sample tracking and detection of inter-sample contamination in SARS-CoV-2 sequencing workflows." Nature microbiology vol. 7,1 (2022): 108-119. doi: https://doi.org/10.1038/s41564-021-01019-2
Lagerborg KA, Normandin E, Bauer MR, Adams G, Figueroa K, Loreth C, Gladden-Young A, Shaw BM, Pearlman LR, Berenzy D, Dewey HB, Kales S, Dobbins ST, Shenoy ES, Hooper D, Pierce VM, Zachary KC, Park DJ, MacInnis BL, Tewhey R, Lemieux JE, Sabeti PC, Reilly SK, Siddle KJ. Synthetic DNA spike-ins (SDSIs) enable sample tracking and detection of inter-sample contamination in SARS-CoV-2 sequencing workflows. Nat Microbiol. 2022 Jan;7(1):108-119. doi: 10.1038/s41564-021-01019-2. Epub 2021 Dec 14. PMID: 34907347.
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Showing 1 to 12 of 134 entries