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Beyond the urban stream syndrome: organic matter budget for diagnostics and restoration of an impaired urban river

EPSCoR Research Infrastructure Improvement Program AND Program Evaluation

Baker MA, Kelso JE.
GSID: r5TkM4e4K1oJ
DM Epstein, JE Kelso, MA Baker - Urban Ecosystems, 2016 - Springer

In response to water quality standard violations linked to excessive organic matter (OM) and a lack of sampling data informing the Total Maximum Daily Load (TMDL), an organic matter budget was created to quantify and identify sources of OM...

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Epstein, D. M., Kelso, J. E., & Baker, M. A. (2016). Beyond the urban stream syndrome: organic matter budget for diagnostics and restoration of an impaired urban river. Urban Ecosystems, 19(4), 1623-1643.
Epstein, Dave M., Julia E. Kelso, and Michelle A. Baker. "Beyond the urban stream syndrome: organic matter budget for diagnostics and restoration of an impaired urban river." Urban Ecosystems 19.4 (2016): 1623-1643.
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Deficiency in outer dense fiber 1 is a marker and potential driver of idiopathic male infertility.

Molecular & cellular proteomics : MCP

Hetherington L, Schneider EK, Scott C, DeKretser D, Muller CH, Hondermarck H, Velkov T, Baker MA.
PMID: 28572402
Mol Cell Proteomics. 2017 Jun;16(6):1172. doi: 10.1074/mcp.A116.060343.

No abstract available.

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Hetherington L, Schneider EK, Scott C, et al. Deficiency in outer dense fiber 1 is a marker and potential driver of idiopathic male infertility. Mol Cell Proteomics. 2017;16(6):1172doi: 10.1074/mcp.A116.060343.
Hetherington, L., Schneider, E. K., Scott, C., DeKretser, D., Muller, C. H., Hondermarck, H., Velkov, T., & Baker, M. A. (2017). Deficiency in outer dense fiber 1 is a marker and potential driver of idiopathic male infertility. Molecular & cellular proteomics : MCP, 16(6), 1172. https://doi.org/10.1074/mcp.A116.060343
Hetherington, Louise, et al. "Deficiency in outer dense fiber 1 is a marker and potential driver of idiopathic male infertility." Molecular & cellular proteomics : MCP vol. 16,6 (2017): 1172. doi: https://doi.org/10.1074/mcp.A116.060343
Hetherington L, Schneider EK, Scott C, DeKretser D, Muller CH, Hondermarck H, Velkov T, Baker MA. Deficiency in outer dense fiber 1 is a marker and potential driver of idiopathic male infertility. Mol Cell Proteomics. 2017 Jun;16(6):1172. doi: 10.1074/mcp.A116.060343. PMID: 28572402; PMCID: PMC5461546.
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Amyloid burden, cortical thickness, and cognitive function in the Wisconsin Registry for Alzheimer's Prevention.

Alzheimer's & dementia (Amsterdam, Netherlands)

Doherty BM, Schultz SA, Oh JM, Koscik RL, Dowling NM, Barnhart TE, Murali D, Gallagher CL, Carlsson CM, Bendlin BB, LaRue A, Hermann BP, Rowley HA, Asthana S, Sager MA, Christian BT, Johnson SC, Okonkwo OC.
PMID: 26161436
Alzheimers Dement (Amst). 2015 Jun 01;1(2):160-169. doi: 10.1016/j.dadm.2015.01.003.

There is a growing interest in understanding how amyloid-β (Aβ) accumulation in preclinical Alzheimer's disease relates to brain morphometric measures and cognition. Existing investigations in this area have been primarily conducted in older cognitively-normal (CN) individuals. Therefore, not much...

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Doherty BM, Schultz SA, Oh JM, et al. Amyloid burden, cortical thickness, and cognitive function in the Wisconsin Registry for Alzheimer's Prevention. Alzheimers Dement (Amst). 2015;1(2):160-169doi: 10.1016/j.dadm.2015.01.003.
Doherty, B. M., Schultz, S. A., Oh, J. M., Koscik, R. L., Dowling, N. M., Barnhart, T. E., Murali, D., Gallagher, C. L., Carlsson, C. M., Bendlin, B. B., LaRue, A., Hermann, B. P., Rowley, H. A., Asthana, S., Sager, M. A., Christian, B. T., Johnson, S. C., & Okonkwo, O. C. (2015). Amyloid burden, cortical thickness, and cognitive function in the Wisconsin Registry for Alzheimer's Prevention. Alzheimer's & dementia (Amsterdam, Netherlands), 1(2), 160-169. https://doi.org/10.1016/j.dadm.2015.01.003
Doherty, Benjamin M, et al. "Amyloid burden, cortical thickness, and cognitive function in the Wisconsin Registry for Alzheimer's Prevention." Alzheimer's & dementia (Amsterdam, Netherlands) vol. 1,2 (2015): 160-169. doi: https://doi.org/10.1016/j.dadm.2015.01.003
Doherty BM, Schultz SA, Oh JM, Koscik RL, Dowling NM, Barnhart TE, Murali D, Gallagher CL, Carlsson CM, Bendlin BB, LaRue A, Hermann BP, Rowley HA, Asthana S, Sager MA, Christian BT, Johnson SC, Okonkwo OC. Amyloid burden, cortical thickness, and cognitive function in the Wisconsin Registry for Alzheimer's Prevention. Alzheimers Dement (Amst). 2015 Jun 01;1(2):160-169. doi: 10.1016/j.dadm.2015.01.003. PMID: 26161436; PMCID: PMC4492165.
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Surface-enhanced optical third-harmonic generation in Ag island films.

Physical review letters

Kim EM, Elovikov SS, Murzina TV, Nikulin AA, Aktsipetrov OA, Bader MA, Marowsky G.
PMID: 16384265
Phys Rev Lett. 2005 Nov 25;95(22):227402. doi: 10.1103/PhysRevLett.95.227402. Epub 2005 Nov 23.

Surface-enhanced optical third-harmonic generation (THG) is observed in silver island films. The THG intensity from Ag nanoparticles is enhanced by more than 2 orders of magnitude with respect to the THG intensity from a smooth and homogeneous silver surface....

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Kim EM, Elovikov SS, Murzina TV, et al. Surface-enhanced optical third-harmonic generation in Ag island films. Phys Rev Lett. 2005;95(22):227402doi: 10.1103/PhysRevLett.95.227402.
Kim, E. M., Elovikov, S. S., Murzina, T. V., Nikulin, A. A., Aktsipetrov, O. A., Bader, M. A., & Marowsky, G. (2005). Surface-enhanced optical third-harmonic generation in Ag island films. Physical review letters, 95(22), 227402. https://doi.org/10.1103/PhysRevLett.95.227402
Kim, E M, et al. "Surface-enhanced optical third-harmonic generation in Ag island films." Physical review letters vol. 95,22 (2005): 227402. doi: https://doi.org/10.1103/PhysRevLett.95.227402
Kim EM, Elovikov SS, Murzina TV, Nikulin AA, Aktsipetrov OA, Bader MA, Marowsky G. Surface-enhanced optical third-harmonic generation in Ag island films. Phys Rev Lett. 2005 Nov 25;95(22):227402. doi: 10.1103/PhysRevLett.95.227402. Epub 2005 Nov 23. PMID: 16384265.
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The Nevada Vital Aging Initiative: a private-public partnership to study early predictors of dementia.

Alzheimer's & dementia : the journal of the Alzheimer's Association

Thal L, Kuller L, Bowman K, Breitner J, Evans D, Farrer L, Frank R, Khachaturian AS, Khachaturian ZS, Kukull W, Nieto J, Petersen R, Sager M, Scherr P, Bain LJ.
PMID: 19595919
Alzheimers Dement. 2007 Jan;3(1):62-7. doi: 10.1016/j.jalz.2006.11.002.

No abstract available.

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Thal L, Kuller L, Bowman K, et al. The Nevada Vital Aging Initiative: a private-public partnership to study early predictors of dementia. Alzheimers Dement. 2007;3(1):62-7doi: 10.1016/j.jalz.2006.11.002.
Thal, L., Kuller, L., Bowman, K., Breitner, J., Evans, D., Farrer, L., Frank, R., Khachaturian, A. S., Khachaturian, Z. S., Kukull, W., Nieto, J., Petersen, R., Sager, M., Scherr, P., & Bain, L. J. (2007). The Nevada Vital Aging Initiative: a private-public partnership to study early predictors of dementia. Alzheimer's & dementia : the journal of the Alzheimer's Association, 3(1), 62-7. https://doi.org/10.1016/j.jalz.2006.11.002
Thal, Leon, et al. "The Nevada Vital Aging Initiative: a private-public partnership to study early predictors of dementia." Alzheimer's & dementia : the journal of the Alzheimer's Association vol. 3,1 (2007): 62-7. doi: https://doi.org/10.1016/j.jalz.2006.11.002
Thal L, Kuller L, Bowman K, Breitner J, Evans D, Farrer L, Frank R, Khachaturian AS, Khachaturian ZS, Kukull W, Nieto J, Petersen R, Sager M, Scherr P, Bain LJ. The Nevada Vital Aging Initiative: a private-public partnership to study early predictors of dementia. Alzheimers Dement. 2007 Jan;3(1):62-7. doi: 10.1016/j.jalz.2006.11.002. PMID: 19595919.
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Identification of gene products present in Triton X-100 soluble and insoluble fractions of human spermatozoa lysates using LC-MS/MS analysis.

Proteomics. Clinical applications

Baker MA, Reeves G, Hetherington L, Müller J, Baur I, Aitken RJ.
PMID: 21136703
Proteomics Clin Appl. 2007 May;1(5):524-32. doi: 10.1002/prca.200601013. Epub 2007 Apr 19.

A comprehensive analysis of the proteins found in human spermatozoa is essential for understanding the events leading up to, and including, fertilization and development. Proteomics offers a platform for investigating this process, provided that the dynamic range is relatively...

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Baker MA, Reeves G, Hetherington L, et al. Identification of gene products present in Triton X-100 soluble and insoluble fractions of human spermatozoa lysates using LC-MS/MS analysis. Proteomics Clin Appl. 2007;1(5):524-32doi: 10.1002/prca.200601013.
Baker, M. A., Reeves, G., Hetherington, L., Müller, J., Baur, I., & Aitken, R. J. (2007). Identification of gene products present in Triton X-100 soluble and insoluble fractions of human spermatozoa lysates using LC-MS/MS analysis. Proteomics. Clinical applications, 1(5), 524-32. https://doi.org/10.1002/prca.200601013
Baker, Mark A, et al. "Identification of gene products present in Triton X-100 soluble and insoluble fractions of human spermatozoa lysates using LC-MS/MS analysis." Proteomics. Clinical applications vol. 1,5 (2007): 524-32. doi: https://doi.org/10.1002/prca.200601013
Baker MA, Reeves G, Hetherington L, Müller J, Baur I, Aitken RJ. Identification of gene products present in Triton X-100 soluble and insoluble fractions of human spermatozoa lysates using LC-MS/MS analysis. Proteomics Clin Appl. 2007 May;1(5):524-32. doi: 10.1002/prca.200601013. Epub 2007 Apr 19. PMID: 21136703.
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Molecular Characterization of Lipopolysaccharide Binding to Human α-1-Acid Glycoprotein.

Journal of lipids

Huang JX, Azad MA, Yuriev E, Baker MA, Nation RL, Li J, Cooper MA, Velkov T.
PMID: 23316371
J Lipids. 2012;2012:475153. doi: 10.1155/2012/475153. Epub 2012 Dec 20.

The ability of AGP to bind circulating lipopolysaccharide (LPS) in plasma is believed to help reduce the proinflammatory effect of bacterial lipid A molecules. Here, for the first time we have characterized human AGP binding characteristics of the LPS...

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Huang JX, Azad MA, Yuriev E, et al. Molecular Characterization of Lipopolysaccharide Binding to Human α-1-Acid Glycoprotein. J Lipids. 2012;2012:475153doi: 10.1155/2012/475153.
Huang, J. X., Azad, M. A., Yuriev, E., Baker, M. A., Nation, R. L., Li, J., Cooper, M. A., & Velkov, T. (2012). Molecular Characterization of Lipopolysaccharide Binding to Human α-1-Acid Glycoprotein. Journal of lipids, 2012475153. https://doi.org/10.1155/2012/475153
Huang, Johnny X, et al. "Molecular Characterization of Lipopolysaccharide Binding to Human α-1-Acid Glycoprotein." Journal of lipids vol. 2012 (2012): 475153. doi: https://doi.org/10.1155/2012/475153
Huang JX, Azad MA, Yuriev E, Baker MA, Nation RL, Li J, Cooper MA, Velkov T. Molecular Characterization of Lipopolysaccharide Binding to Human α-1-Acid Glycoprotein. J Lipids. 2012;2012:475153. doi: 10.1155/2012/475153. Epub 2012 Dec 20. PMID: 23316371; PMCID: PMC3539403.
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The transmission of digenetic trematodes: style, elegance, complexity.

Integrative and comparative biology

Esch GW, Barger MA, Fellis KJ.
PMID: 21708722
Integr Comp Biol. 2002 Apr;42(2):304-12. doi: 10.1093/icb/42.2.304.

Traditionally, the field of parasitology has dealt with eukaryotic animals, to the exclusion of viruses, bacteria, fungi, etc., which is the way it will be approached here. The focus of the present paper will be on certain ecological aspects...

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Esch GW, Barger MA, Fellis KJ. The transmission of digenetic trematodes: style, elegance, complexity. Integr Comp Biol. 2002;42(2):304-12doi: 10.1093/icb/42.2.304.
Esch, G. W., Barger, M. A., & Fellis, K. J. (2002). The transmission of digenetic trematodes: style, elegance, complexity. Integrative and comparative biology, 42(2), 304-12. https://doi.org/10.1093/icb/42.2.304
Esch, Gerald W, et al. "The transmission of digenetic trematodes: style, elegance, complexity." Integrative and comparative biology vol. 42,2 (2002): 304-12. doi: https://doi.org/10.1093/icb/42.2.304
Esch GW, Barger MA, Fellis KJ. The transmission of digenetic trematodes: style, elegance, complexity. Integr Comp Biol. 2002 Apr;42(2):304-12. doi: 10.1093/icb/42.2.304. PMID: 21708722.
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Like Schrödinger's cat, the impact bias is both dead and alive: reply to Wilson and Gilbert (2013).

Journal of personality and social psychology

Levine LJ, Lench HC, Kaplan RL, Safer MA.
PMID: 24219786
J Pers Soc Psychol. 2013 Nov;105(5):749-56. doi: 10.1037/a0034340.

In their comment on our article on affective forecasting (Levine, Lench, Kaplan, & Safer, 2012), Wilson and Gilbert (2013) criticized the meta-analysis, proposed alternative explanations for the empirical studies, and concluded that the impact bias is alive and well....

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Levine LJ, Lench HC, Kaplan RL, et al. Like Schrödinger's cat, the impact bias is both dead and alive: reply to Wilson and Gilbert (2013). J Pers Soc Psychol. 2013;105(5):749-56doi: 10.1037/a0034340.
Levine, L. J., Lench, H. C., Kaplan, R. L., & Safer, M. A. (2013). Like Schrödinger's cat, the impact bias is both dead and alive: reply to Wilson and Gilbert (2013). Journal of personality and social psychology, 105(5), 749-56. https://doi.org/10.1037/a0034340
Levine, Linda J, et al. "Like Schrödinger's cat, the impact bias is both dead and alive: reply to Wilson and Gilbert (2013)." Journal of personality and social psychology vol. 105,5 (2013): 749-56. doi: https://doi.org/10.1037/a0034340
Levine LJ, Lench HC, Kaplan RL, Safer MA. Like Schrödinger's cat, the impact bias is both dead and alive: reply to Wilson and Gilbert (2013). J Pers Soc Psychol. 2013 Nov;105(5):749-56. doi: 10.1037/a0034340. PMID: 24219786.
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Microbial wars: Competition in ecological niches and within the microbiome.

Microbial cell (Graz, Austria)

Bauer MA, Kainz K, Carmona-Gutierrez D, Madeo F.
PMID: 29796386
Microb Cell. 2018 May 07;5(5):215-219. doi: 10.15698/mic2018.05.628.

Many microbial communities live in highly competitive surroundings, in which the fight for resources determines their survival and genetic persistence. Humans live in a close relationship with microbial communities, which includes the health- and disease-determining interactions with our microbiome....

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Bauer MA, Kainz K, Carmona-Gutierrez D, et al. Microbial wars: Competition in ecological niches and within the microbiome. Microb Cell. 2018;5(5):215-219doi: 10.15698/mic2018.05.628.
Bauer, M. A., Kainz, K., Carmona-Gutierrez, D., & Madeo, F. (2018). Microbial wars: Competition in ecological niches and within the microbiome. Microbial cell (Graz, Austria), 5(5), 215-219. https://doi.org/10.15698/mic2018.05.628
Bauer, Maria A, et al. "Microbial wars: Competition in ecological niches and within the microbiome." Microbial cell (Graz, Austria) vol. 5,5 (2018): 215-219. doi: https://doi.org/10.15698/mic2018.05.628
Bauer MA, Kainz K, Carmona-Gutierrez D, Madeo F. Microbial wars: Competition in ecological niches and within the microbiome. Microb Cell. 2018 May 07;5(5):215-219. doi: 10.15698/mic2018.05.628. PMID: 29796386; PMCID: PMC5961915.
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Giant vortex clusters in a two-dimensional quantum fluid.

Science (New York, N.Y.)

Gauthier G, Reeves MT, Yu X, Bradley AS, Baker MA, Bell TA, Rubinsztein-Dunlop H, Davis MJ, Neely TW.
PMID: 31249054
Science. 2019 Jun 28;364(6447):1264-1267. doi: 10.1126/science.aat5718.

Adding energy to a system through transient stirring usually leads to more disorder. In contrast, point-like vortices in a bounded two-dimensional fluid are predicted to reorder above a certain energy, forming persistent vortex clusters. In this study, we experimentally...

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Gauthier G, Reeves MT, Yu X, et al. Giant vortex clusters in a two-dimensional quantum fluid. Science. 2019;364(6447):1264-1267doi: 10.1126/science.aat5718.
Gauthier, G., Reeves, M. T., Yu, X., Bradley, A. S., Baker, M. A., Bell, T. A., Rubinsztein-Dunlop, H., Davis, M. J., & Neely, T. W. (2019). Giant vortex clusters in a two-dimensional quantum fluid. Science (New York, N.Y.), 364(6447), 1264-1267. https://doi.org/10.1126/science.aat5718
Gauthier, Guillaume, et al. "Giant vortex clusters in a two-dimensional quantum fluid." Science (New York, N.Y.) vol. 364,6447 (2019): 1264-1267. doi: https://doi.org/10.1126/science.aat5718
Gauthier G, Reeves MT, Yu X, Bradley AS, Baker MA, Bell TA, Rubinsztein-Dunlop H, Davis MJ, Neely TW. Giant vortex clusters in a two-dimensional quantum fluid. Science. 2019 Jun 28;364(6447):1264-1267. doi: 10.1126/science.aat5718. PMID: 31249054.
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Low‑Level Environmental Heavy Metals are Associated with Obesity Among Postmenopausal Women in a Southern State.

Exposure and health

Stahr S, Chiang TC, Bauer MA, Runnells GA, Rogers LJ, Vi Do H, Kadlubar SA, Joseph Su L.
PMID: 34337191
Expo Health. 2021 Jun;13(2):269-280. doi: 10.1007/s12403-020-00381-6. Epub 2021 Jan 17.

Both arsenic and cadmium are reported to be toxic to humans. The use of saliva as a biomarker of low-level exposures to these elements has not been adequately explored, and the putative relationship between exposure and obesity is unclear....

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Stahr S, Chiang TC, Bauer MA, et al. Low‑Level Environmental Heavy Metals are Associated with Obesity Among Postmenopausal Women in a Southern State. Expo Health. 2021;13(2):269-280doi: 10.1007/s12403-020-00381-6.
Stahr, S., Chiang, T. C., Bauer, M. A., Runnells, G. A., Rogers, L. J., Vi Do, H., Kadlubar, S. A., & Joseph Su, L. (2021). Low‑Level Environmental Heavy Metals are Associated with Obesity Among Postmenopausal Women in a Southern State. Exposure and health, 13(2), 269-280. https://doi.org/10.1007/s12403-020-00381-6
Stahr, Shelbie, et al. "Low‑Level Environmental Heavy Metals are Associated with Obesity Among Postmenopausal Women in a Southern State." Exposure and health vol. 13,2 (2021): 269-280. doi: https://doi.org/10.1007/s12403-020-00381-6
Stahr S, Chiang TC, Bauer MA, Runnells GA, Rogers LJ, Vi Do H, Kadlubar SA, Joseph Su L. Low‑Level Environmental Heavy Metals are Associated with Obesity Among Postmenopausal Women in a Southern State. Expo Health. 2021 Jun;13(2):269-280. doi: 10.1007/s12403-020-00381-6. Epub 2021 Jan 17. PMID: 34337191; PMCID: PMC8323941.
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Showing 1 to 12 of 203 entries