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A computational workflow for designing silicon donor qubits.

Nanotechnology

Humble TS, Ericson MN, Jakowski J, Huang J, Britton C, Curtis FG, Dumitrescu EF, Mohiyaddin FA, Sumpter BG.
PMID: 27641513
Nanotechnology. 2016 Oct 21;27(42):424002. doi: 10.1088/0957-4484/27/42/424002. Epub 2016 Sep 19.

Developing devices that can reliably and accurately demonstrate the principles of superposition and entanglement is an on-going challenge for the quantum computing community. Modeling and simulation offer attractive means of testing early device designs and establishing expectations for operational...

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Humble TS, Ericson MN, Jakowski J, et al. A computational workflow for designing silicon donor qubits. Nanotechnology. 2016;27(42):424002doi: 10.1088/0957-4484/27/42/424002.
Humble, T. S., Ericson, M. N., Jakowski, J., Huang, J., Britton, C., Curtis, F. G., Dumitrescu, E. F., Mohiyaddin, F. A., & Sumpter, B. G. (2016). A computational workflow for designing silicon donor qubits. Nanotechnology, 27(42), 424002. https://doi.org/10.1088/0957-4484/27/42/424002
Humble, Travis S, et al. "A computational workflow for designing silicon donor qubits." Nanotechnology vol. 27,42 (2016): 424002. doi: https://doi.org/10.1088/0957-4484/27/42/424002
Humble TS, Ericson MN, Jakowski J, Huang J, Britton C, Curtis FG, Dumitrescu EF, Mohiyaddin FA, Sumpter BG. A computational workflow for designing silicon donor qubits. Nanotechnology. 2016 Oct 21;27(42):424002. doi: 10.1088/0957-4484/27/42/424002. Epub 2016 Sep 19. PMID: 27641513.
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The importance of burrowing, climbing and standing upright for laboratory rats.

Royal Society open science

Makowska IJ, Weary DM.
PMID: 27429772
R Soc Open Sci. 2016 Jun 29;3(6):160136. doi: 10.1098/rsos.160136. eCollection 2016 Jun.

Standard laboratory cages prevent rats (Rattus norvegicus) from performing many behaviours that they perform in the wild, but little is known about how this may affect their welfare. The aims of this study were (i) to record the propensity...

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Makowska IJ, Weary DM. The importance of burrowing, climbing and standing upright for laboratory rats. R Soc Open Sci. 2016;3(6):160136doi: 10.1098/rsos.160136.
Makowska, I. J., & Weary, D. M. (2016). The importance of burrowing, climbing and standing upright for laboratory rats. Royal Society open science, 3(6), 160136. https://doi.org/10.1098/rsos.160136
Makowska, I Joanna, and Weary, Daniel M. "The importance of burrowing, climbing and standing upright for laboratory rats." Royal Society open science vol. 3,6 (2016): 160136. doi: https://doi.org/10.1098/rsos.160136
Makowska IJ, Weary DM. The importance of burrowing, climbing and standing upright for laboratory rats. R Soc Open Sci. 2016 Jun 29;3(6):160136. doi: 10.1098/rsos.160136. eCollection 2016 Jun. PMID: 27429772; PMCID: PMC4929907.
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Selected cytokines and soluble forms of cytokine receptors in coronary artery disease.

European journal of internal medicine

Mizia-Stec K, Mandecki T, Zahorska-Markiewicz B, Janowska J, Szulc A, Jastrzebska-Maj E, Szymanski L, Majewski T.
PMID: 11893469
Eur J Intern Med. 2002 Mar;13(2):115-122. doi: 10.1016/s0953-6205(02)00004-3.

Background: Cytokines may play a role in the pathogenesis of atherosclerosis and coronary artery disease (CAD). Methods: We examined serum concentrations of selected pro- (TNFalpha, IL-2) and anti-inflammatory (IL-10) cytokines, and soluble forms of TNF receptors (sTNFR 1 and...

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Mizia-Stec K, Mandecki T, Zahorska-Markiewicz B, et al. Selected cytokines and soluble forms of cytokine receptors in coronary artery disease. Eur J Intern Med. 2002;13(2):115-122doi: 10.1016/s0953-6205(02)00004-3.
Mizia-Stec, K., Mandecki, T., Zahorska-Markiewicz, B., Janowska, J., Szulc, A., Jastrzebska-Maj, E., Szymanski, L., & Majewski, T. (2002). Selected cytokines and soluble forms of cytokine receptors in coronary artery disease. European journal of internal medicine, 13(2), 115-122. https://doi.org/10.1016/s0953-6205(02)00004-3
Mizia-Stec, Katarzyna, et al. "Selected cytokines and soluble forms of cytokine receptors in coronary artery disease." European journal of internal medicine vol. 13,2 (2002): 115-122. doi: https://doi.org/10.1016/s0953-6205(02)00004-3
Mizia-Stec K, Mandecki T, Zahorska-Markiewicz B, Janowska J, Szulc A, Jastrzebska-Maj E, Szymanski L, Majewski T. Selected cytokines and soluble forms of cytokine receptors in coronary artery disease. Eur J Intern Med. 2002 Mar;13(2):115-122. doi: 10.1016/s0953-6205(02)00004-3. PMID: 11893469.
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[Not Available].

Kardiologia polska

Makowska E, Rezler J.
PMID: 12917736
Kardiol Pol. 2002 Oct;57(10):369.

No abstract available.

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Makowska E, Rezler J. Elektrokardiogram miesiaca. [Not Available]. Kardiol Pol. 2002;57(10):369
Makowska, E., & Rezler, J. (2002). Elektrokardiogram miesiaca. [Not Available]. Kardiologia polska, 57(10), 369.
Makowska, Ewa, and Rezler, Joanna. "Elektrokardiogram miesiaca." [Not Available]. Kardiologia polska vol. 57,10 (2002): 369.
Makowska E, Rezler J. Elektrokardiogram miesiaca. [Not Available]. Kardiol Pol. 2002 Oct;57(10):369. Polish. PMID: 12917736.
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Quantum wave packet ab initio molecular dynamics: an approach to study quantum dynamics in large systems.

The Journal of chemical physics

Iyengar SS, Jakowski J.
PMID: 15836199
J Chem Phys. 2005 Mar 15;122(11):114105. doi: 10.1063/1.1871876.

A methodology to efficiently conduct simultaneous dynamics of electrons and nuclei is presented. The approach involves quantum wave packet dynamics using an accurate banded, sparse and Toeplitz representation for the discrete free propagator, in conjunction with ab initio molecular...

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Iyengar SS, Jakowski J. Quantum wave packet ab initio molecular dynamics: an approach to study quantum dynamics in large systems. J Chem Phys. 2005;122(11):114105doi: 10.1063/1.1871876.
Iyengar, S. S., & Jakowski, J. (2005). Quantum wave packet ab initio molecular dynamics: an approach to study quantum dynamics in large systems. The Journal of chemical physics, 122(11), 114105. https://doi.org/10.1063/1.1871876
Iyengar, Srinivasan S, and Jakowski, Jacek. "Quantum wave packet ab initio molecular dynamics: an approach to study quantum dynamics in large systems." The Journal of chemical physics vol. 122,11 (2005): 114105. doi: https://doi.org/10.1063/1.1871876
Iyengar SS, Jakowski J. Quantum wave packet ab initio molecular dynamics: an approach to study quantum dynamics in large systems. J Chem Phys. 2005 Mar 15;122(11):114105. doi: 10.1063/1.1871876. PMID: 15836199.
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Effect of weight reduction on serum ghrelin and TNFalpha concentrations in obese women.

European journal of internal medicine

Zahorska-Markiewicz B, Mizia-Stec K, Olszanecka-Glinianowicz M, Janowska J.
PMID: 15245720
Eur J Intern Med. 2004 Jun;15(3):172-175. doi: 10.1016/j.ejim.2004.02.002.

Background: Ghrelin causes weight gain by increasing food intake in rodents. Tumor necrosis factor alpha (TNFalpha) is produced by adipose tissue, modulates its metabolism and stimulates catabolic processes. The aim of our study was to evaluate whether weight loss...

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Zahorska-Markiewicz B, Mizia-Stec K, Olszanecka-Glinianowicz M, et al. Effect of weight reduction on serum ghrelin and TNFalpha concentrations in obese women. Eur J Intern Med. 2004;15(3):172-175doi: 10.1016/j.ejim.2004.02.002.
Zahorska-Markiewicz, B., Mizia-Stec, K., Olszanecka-Glinianowicz, M., & Janowska, J. (2004). Effect of weight reduction on serum ghrelin and TNFalpha concentrations in obese women. European journal of internal medicine, 15(3), 172-175. https://doi.org/10.1016/j.ejim.2004.02.002
Zahorska-Markiewicz, Barbara, et al. "Effect of weight reduction on serum ghrelin and TNFalpha concentrations in obese women." European journal of internal medicine vol. 15,3 (2004): 172-175. doi: https://doi.org/10.1016/j.ejim.2004.02.002
Zahorska-Markiewicz B, Mizia-Stec K, Olszanecka-Glinianowicz M, Janowska J. Effect of weight reduction on serum ghrelin and TNFalpha concentrations in obese women. Eur J Intern Med. 2004 Jun;15(3):172-175. doi: 10.1016/j.ejim.2004.02.002. PMID: 15245720.
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Influence of the Length of the Alanine Spacer on the Acidic-Basic Properties of the Ac-Lys-(Ala)(n)-Lys-NH(2) Peptides (n = 0, 1, 2, …, 5).

Journal of solution chemistry

Makowska J, Liwo A, Chmurzyński L, Scheraga HA.
PMID: 23204596
J Solution Chem. 2012 Nov;41(10):1738-1746. doi: 10.1007/s10953-012-9903-7. Epub 2012 Oct 13.

By using the potentiometric titration method, we have determined the pK(a) values of the two terminal lysine groups in six alanine-based peptides differing in the length of the alanine chain: Ac-Lys-Lys-NH(2) (KK), Ac-Lys-Ala-Lys-NH(2) (KAK), Ac-Lys-Ala-Ala-Lys-NH(2) (KAK2), Ac-Lys-Ala-Ala-Ala-Lys-NH(2) (KAK3), Ac-Lys-Ala-Ala-Ala-Ala-Lys-NH(2)...

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Makowska J, Liwo A, Chmurzyński L, et al. Influence of the Length of the Alanine Spacer on the Acidic-Basic Properties of the Ac-Lys-(Ala)(n)-Lys-NH(2) Peptides (n = 0, 1, 2, …, 5). J Solution Chem. 2012;41(10):1738-1746doi: 10.1007/s10953-012-9903-7.
Makowska, J., Liwo, A., Chmurzyński, L., & Scheraga, H. A. (2012). Influence of the Length of the Alanine Spacer on the Acidic-Basic Properties of the Ac-Lys-(Ala)(n)-Lys-NH(2) Peptides (n = 0, 1, 2, …, 5). Journal of solution chemistry, 41(10), 1738-1746. https://doi.org/10.1007/s10953-012-9903-7
Makowska, Joanna, et al. "Influence of the Length of the Alanine Spacer on the Acidic-Basic Properties of the Ac-Lys-(Ala)(n)-Lys-NH(2) Peptides (n = 0, 1, 2, …, 5)." Journal of solution chemistry vol. 41,10 (2012): 1738-1746. doi: https://doi.org/10.1007/s10953-012-9903-7
Makowska J, Liwo A, Chmurzyński L, Scheraga HA. Influence of the Length of the Alanine Spacer on the Acidic-Basic Properties of the Ac-Lys-(Ala)(n)-Lys-NH(2) Peptides (n = 0, 1, 2, …, 5). J Solution Chem. 2012 Nov;41(10):1738-1746. doi: 10.1007/s10953-012-9903-7. Epub 2012 Oct 13. PMID: 23204596; PMCID: PMC3510421.
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The isotopic effects of deuteration on optoelectronic properties of conducting polymers.

Nature communications

Shao M, Keum J, Chen J, He Y, Chen W, Browning JF, Jakowski J, Sumpter BG, Ivanov IN, Ma YZ, Rouleau CM, Smith SC, Geohegan DB, Hong K, Xiao K.
PMID: 24458188
Nat Commun. 2014;5:3180. doi: 10.1038/ncomms4180.

The attractive optoelectronic properties of conducting polymers depend sensitively upon intra- and inter-polymer chain interactions, and therefore new methods to manipulate these interactions are continually being pursued. Here, we report a study of the isotopic effects of deuterium substitution...

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Shao M, Keum J, Chen J, et al. The isotopic effects of deuteration on optoelectronic properties of conducting polymers. Nat Commun. 2014;5:3180doi: 10.1038/ncomms4180.
Shao, M., Keum, J., Chen, J., He, Y., Chen, W., Browning, J. F., Jakowski, J., Sumpter, B. G., Ivanov, I. N., Ma, Y. Z., Rouleau, C. M., Smith, S. C., Geohegan, D. B., Hong, K., & Xiao, K. (2014). The isotopic effects of deuteration on optoelectronic properties of conducting polymers. Nature communications, 53180. https://doi.org/10.1038/ncomms4180
Shao, Ming, et al. "The isotopic effects of deuteration on optoelectronic properties of conducting polymers." Nature communications vol. 5 (2014): 3180. doi: https://doi.org/10.1038/ncomms4180
Shao M, Keum J, Chen J, He Y, Chen W, Browning JF, Jakowski J, Sumpter BG, Ivanov IN, Ma YZ, Rouleau CM, Smith SC, Geohegan DB, Hong K, Xiao K. The isotopic effects of deuteration on optoelectronic properties of conducting polymers. Nat Commun. 2014;5:3180. doi: 10.1038/ncomms4180. PMID: 24458188.
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Virulence factors, prevalence and potential transmission of extraintestinal pathogenic .

Gut pathogens

Sarowska J, Futoma-Koloch B, Jama-Kmiecik A, Frej-Madrzak M, Ksiazczyk M, Bugla-Ploskonska G, Choroszy-Krol I.
PMID: 30828388
Gut Pathog. 2019 Feb 21;11:10. doi: 10.1186/s13099-019-0290-0. eCollection 2019.

Extraintestinal pathogenic

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Sarowska J, Futoma-Koloch B, Jama-Kmiecik A, et al. Virulence factors, prevalence and potential transmission of extraintestinal pathogenic . Gut Pathog. 2019;11:10doi: 10.1186/s13099-019-0290-0.
Sarowska, J., Futoma-Koloch, B., Jama-Kmiecik, A., Frej-Madrzak, M., Ksiazczyk, M., Bugla-Ploskonska, G., & Choroszy-Krol, I. (2019). Virulence factors, prevalence and potential transmission of extraintestinal pathogenic . Gut pathogens, 1110. https://doi.org/10.1186/s13099-019-0290-0
Sarowska, Jolanta, et al. "Virulence factors, prevalence and potential transmission of extraintestinal pathogenic ." Gut pathogens vol. 11 (2019): 10. doi: https://doi.org/10.1186/s13099-019-0290-0
Sarowska J, Futoma-Koloch B, Jama-Kmiecik A, Frej-Madrzak M, Ksiazczyk M, Bugla-Ploskonska G, Choroszy-Krol I. Virulence factors, prevalence and potential transmission of extraintestinal pathogenic . Gut Pathog. 2019 Feb 21;11:10. doi: 10.1186/s13099-019-0290-0. eCollection 2019. PMID: 30828388; PMCID: PMC6383261.
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Strong Influence of Ti Adhesion Layer on Electron-Phonon Relaxation in Thin Gold Films: Ab Initio Nonadiabatic Molecular Dynamics.

ACS applied materials & interfaces

Zhou X, Jankowska J, Li L, Giri A, Hopkins PE, Prezhdo OV.
PMID: 29135220
ACS Appl Mater Interfaces. 2017 Dec 13;9(49):43343-43351. doi: 10.1021/acsami.7b12535. Epub 2017 Nov 28.

Electron-phonon relaxation in thin metal films is an important consideration for many ultrasmall devices and ultrafast applications. Recent time-resolved experiments demonstrate a significant, more than a factor of five, increase in the electron-phonon coupling and acceleration in the electron-phonon...

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Zhou X, Jankowska J, Li L, et al. Strong Influence of Ti Adhesion Layer on Electron-Phonon Relaxation in Thin Gold Films: Ab Initio Nonadiabatic Molecular Dynamics. ACS Appl Mater Interfaces. 2017;9(49):43343-43351doi: 10.1021/acsami.7b12535.
Zhou, X., Jankowska, J., Li, L., Giri, A., Hopkins, P. E., & Prezhdo, O. V. (2017). Strong Influence of Ti Adhesion Layer on Electron-Phonon Relaxation in Thin Gold Films: Ab Initio Nonadiabatic Molecular Dynamics. ACS applied materials & interfaces, 9(49), 43343-43351. https://doi.org/10.1021/acsami.7b12535
Zhou, Xin, et al. "Strong Influence of Ti Adhesion Layer on Electron-Phonon Relaxation in Thin Gold Films: Ab Initio Nonadiabatic Molecular Dynamics." ACS applied materials & interfaces vol. 9,49 (2017): 43343-43351. doi: https://doi.org/10.1021/acsami.7b12535
Zhou X, Jankowska J, Li L, Giri A, Hopkins PE, Prezhdo OV. Strong Influence of Ti Adhesion Layer on Electron-Phonon Relaxation in Thin Gold Films: Ab Initio Nonadiabatic Molecular Dynamics. ACS Appl Mater Interfaces. 2017 Dec 13;9(49):43343-43351. doi: 10.1021/acsami.7b12535. Epub 2017 Nov 28. PMID: 29135220.
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Is fruit and vegetable intake associated with asthma or chronic rhino-sinusitis in European adults? Results from the Global Allergy and Asthma Network of Excellence (GA.

Clinical and translational allergy

Garcia-Larsen V, Arthur R, Potts JF, Howarth PH, Ahlström M, Haahtela T, Loureiro C, Bom AT, Brożek G, Makowska J, Kowalski ML, Thilsing T, Keil T, Matricardi PM, Torén K, van Zele T, Bachert C, Rymarczyk B, Janson C, Forsberg B, Niżankowska-Mogilnicka E, Burney PGJ.
PMID: 28149501
Clin Transl Allergy. 2017 Jan 27;7:3. doi: 10.1186/s13601-016-0140-9. eCollection 2017.

BACKGROUND: Fruits and vegetables are rich in compounds with proposed antioxidant, anti-allergic and anti-inflammatory properties, which could contribute to reduce the prevalence of asthma and allergic diseases.OBJECTIVE: We investigated the association between asthma, and chronic rhino-sinusitis (CRS) with intake...

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Garcia-Larsen V, Arthur R, Potts JF, et al. Is fruit and vegetable intake associated with asthma or chronic rhino-sinusitis in European adults? Results from the Global Allergy and Asthma Network of Excellence (GA. Clin Transl Allergy. 2017;7:3doi: 10.1186/s13601-016-0140-9.
Garcia-Larsen, V., Arthur, R., Potts, J. F., Howarth, P. H., Ahlström, M., Haahtela, T., Loureiro, C., Bom, A. T., Brożek, G., Makowska, J., Kowalski, M. L., Thilsing, T., Keil, T., Matricardi, P. M., Torén, K., van Zele, T., Bachert, C., Rymarczyk, B., Janson, C., Forsberg, B., Niżankowska-Mogilnicka, E., & Burney, P. G. J. (2017). Is fruit and vegetable intake associated with asthma or chronic rhino-sinusitis in European adults? Results from the Global Allergy and Asthma Network of Excellence (GA. Clinical and translational allergy, 73. https://doi.org/10.1186/s13601-016-0140-9
Garcia-Larsen, Vanessa, et al. "Is fruit and vegetable intake associated with asthma or chronic rhino-sinusitis in European adults? Results from the Global Allergy and Asthma Network of Excellence (GA." Clinical and translational allergy vol. 7 (2017): 3. doi: https://doi.org/10.1186/s13601-016-0140-9
Garcia-Larsen V, Arthur R, Potts JF, Howarth PH, Ahlström M, Haahtela T, Loureiro C, Bom AT, Brożek G, Makowska J, Kowalski ML, Thilsing T, Keil T, Matricardi PM, Torén K, van Zele T, Bachert C, Rymarczyk B, Janson C, Forsberg B, Niżankowska-Mogilnicka E, Burney PGJ. Is fruit and vegetable intake associated with asthma or chronic rhino-sinusitis in European adults? Results from the Global Allergy and Asthma Network of Excellence (GA. Clin Transl Allergy. 2017 Jan 27;7:3. doi: 10.1186/s13601-016-0140-9. eCollection 2017. PMID: 28149501; PMCID: PMC5273849.
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Tailoring the Schiff base photoswitching - a non-adiabatic molecular dynamics study of substituent effect on excited state proton transfer.

Physical chemistry chemical physics : PCCP

Jankowska J, Barbatti M, Sadlej J, Sobolewski AL.
PMID: 28155934
Phys Chem Chem Phys. 2017 Feb 15;19(7):5318-5325. doi: 10.1039/c6cp08545h.

Small molecular systems exhibiting Excited State Intramolecular Proton Transfer (ESIPT) attract considerable attention due to their possible role as ultrafast, efficient, and photostable molecular photoswitches. Here, by means of static potential energy profile scan and on-the-fly non-adiabatic dynamics simulations...

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Jankowska J, Barbatti M, Sadlej J, et al. Tailoring the Schiff base photoswitching - a non-adiabatic molecular dynamics study of substituent effect on excited state proton transfer. Phys Chem Chem Phys. 2017;19(7):5318-5325doi: 10.1039/c6cp08545h.
Jankowska, J., Barbatti, M., Sadlej, J., & Sobolewski, A. L. (2017). Tailoring the Schiff base photoswitching - a non-adiabatic molecular dynamics study of substituent effect on excited state proton transfer. Physical chemistry chemical physics : PCCP, 19(7), 5318-5325. https://doi.org/10.1039/c6cp08545h
Jankowska, Joanna, et al. "Tailoring the Schiff base photoswitching - a non-adiabatic molecular dynamics study of substituent effect on excited state proton transfer." Physical chemistry chemical physics : PCCP vol. 19,7 (2017): 5318-5325. doi: https://doi.org/10.1039/c6cp08545h
Jankowska J, Barbatti M, Sadlej J, Sobolewski AL. Tailoring the Schiff base photoswitching - a non-adiabatic molecular dynamics study of substituent effect on excited state proton transfer. Phys Chem Chem Phys. 2017 Feb 15;19(7):5318-5325. doi: 10.1039/c6cp08545h. PMID: 28155934.
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