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A review of estimation of distribution algorithms in bioinformatics.

BioData mining

Armañanzas R, Inza I, Santana R, Saeys Y, Flores JL, Lozano JA, Van de Peer Y, Blanco R, Robles V, Bielza C, Larrañaga P.
PMID: 18822112
BioData Min. 2008 Sep 11;1(1):6. doi: 10.1186/1756-0381-1-6.

Evolutionary search algorithms have become an essential asset in the algorithmic toolbox for solving high-dimensional optimization problems in across a broad range of bioinformatics problems. Genetic algorithms, the most well-known and representative evolutionary search technique, have been the subject...

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Armañanzas R, Inza I, Santana R, et al. A review of estimation of distribution algorithms in bioinformatics. BioData Min. 2008;1(1):6doi: 10.1186/1756-0381-1-6.
Armañanzas, R., Inza, I., Santana, R., Saeys, Y., Flores, J. L., Lozano, J. A., Van de Peer, Y., Blanco, R., Robles, V., Bielza, C., & Larrañaga, P. (2008). A review of estimation of distribution algorithms in bioinformatics. BioData mining, 1(1), 6. https://doi.org/10.1186/1756-0381-1-6
Armañanzas, Rubén, et al. "A review of estimation of distribution algorithms in bioinformatics." BioData mining vol. 1,1 (2008): 6. doi: https://doi.org/10.1186/1756-0381-1-6
Armañanzas R, Inza I, Santana R, Saeys Y, Flores JL, Lozano JA, Van de Peer Y, Blanco R, Robles V, Bielza C, Larrañaga P. A review of estimation of distribution algorithms in bioinformatics. BioData Min. 2008 Sep 11;1(1):6. doi: 10.1186/1756-0381-1-6. PMID: 18822112; PMCID: PMC2576251.
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Towards an ontological representation of morbidity and mortality in Description Logics.

Journal of biomedical semantics

Santana F, Freitas F, Fernandes R, Medeiros Z, Schober D.
PMID: 23046681
J Biomed Semantics. 2012 Sep 21;3:S7. doi: 10.1186/2041-1480-3-S2-S7. Epub 2012 Sep 21.

BACKGROUND: Despite the high coverage of biomedical ontologies, very few sound definitions of death can be found. Nevertheless, this concept has its relevance in epidemiology, such as for data integration within mortality notification systems. We here introduce an ontological...

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Santana F, Freitas F, Fernandes R, et al. Towards an ontological representation of morbidity and mortality in Description Logics. J Biomed Semantics. 2012;3:S7doi: 10.1186/2041-1480-3-S2-S7.
Santana, F., Freitas, F., Fernandes, R., Medeiros, Z., & Schober, D. (2012). Towards an ontological representation of morbidity and mortality in Description Logics. Journal of biomedical semantics, 3S7. https://doi.org/10.1186/2041-1480-3-S2-S7
Santana, Filipe, et al. "Towards an ontological representation of morbidity and mortality in Description Logics." Journal of biomedical semantics vol. 3 (2012): S7. doi: https://doi.org/10.1186/2041-1480-3-S2-S7
Santana F, Freitas F, Fernandes R, Medeiros Z, Schober D. Towards an ontological representation of morbidity and mortality in Description Logics. J Biomed Semantics. 2012 Sep 21;3:S7. doi: 10.1186/2041-1480-3-S2-S7. Epub 2012 Sep 21. PMID: 23046681; PMCID: PMC3448531.
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Synthesis of Ring II/III Fragment of Kanamycin: A New Minimum Structural Motif for Aminoglycoside Recognition.

Antibiotics (Basel, Switzerland)

Zárate SG, Bastida A, Santana AG, Revuelta J.
PMID: 31382490
Antibiotics (Basel). 2019 Aug 02;8(3). doi: 10.3390/antibiotics8030109.

A novel protocol has been established to prepare the kanamycin ring II/III fragment, which has been validated as a minimum structural motif for the development of new aminoglycosides on the basis of its bactericidal activity even against resistant strains....

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Zárate SG, Bastida A, Santana AG, et al. Synthesis of Ring II/III Fragment of Kanamycin: A New Minimum Structural Motif for Aminoglycoside Recognition. Antibiotics (Basel). 2019;8(3)doi: 10.3390/antibiotics8030109.
Zárate, S. G., Bastida, A., Santana, A. G., & Revuelta, J. (2019). Synthesis of Ring II/III Fragment of Kanamycin: A New Minimum Structural Motif for Aminoglycoside Recognition. Antibiotics (Basel, Switzerland), 8(3), . https://doi.org/10.3390/antibiotics8030109
Zárate, Sandra G, et al. "Synthesis of Ring II/III Fragment of Kanamycin: A New Minimum Structural Motif for Aminoglycoside Recognition." Antibiotics (Basel, Switzerland) vol. 8,3 (2019). doi: https://doi.org/10.3390/antibiotics8030109
Zárate SG, Bastida A, Santana AG, Revuelta J. Synthesis of Ring II/III Fragment of Kanamycin: A New Minimum Structural Motif for Aminoglycoside Recognition. Antibiotics (Basel). 2019 Aug 02;8(3). doi: 10.3390/antibiotics8030109. PMID: 31382490; PMCID: PMC6783941.
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3D reconstruction does not improve agreement and results in an increase in surgical indications in proximal humeral fractures.

Journal of orthopaedics

Torrens C, Marí R, Cuenca M, Ferrer T, Langohr K, Santana F.
PMID: 30210203
J Orthop. 2018 Sep 06;15(4):967-970. doi: 10.1016/j.jor.2018.08.041. eCollection 2018 Dec.

The objective of this study is to analyze the effect of different imaging modalities in treatment decision making in proximal humeral fractures. After evaluation of 116 consecutive proximal humeral fractures, observers were asked to give treatment recommendation (conservative vs....

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Torrens C, Marí R, Cuenca M, et al. 3D reconstruction does not improve agreement and results in an increase in surgical indications in proximal humeral fractures. J Orthop. 2018;15(4):967-970doi: 10.1016/j.jor.2018.08.041.
Torrens, C., Marí, R., Cuenca, M., Ferrer, T., Langohr, K., & Santana, F. (2018). 3D reconstruction does not improve agreement and results in an increase in surgical indications in proximal humeral fractures. Journal of orthopaedics, 15(4), 967-970. https://doi.org/10.1016/j.jor.2018.08.041
Torrens, Carlos, et al. "3D reconstruction does not improve agreement and results in an increase in surgical indications in proximal humeral fractures." Journal of orthopaedics vol. 15,4 (2018): 967-970. doi: https://doi.org/10.1016/j.jor.2018.08.041
Torrens C, Marí R, Cuenca M, Ferrer T, Langohr K, Santana F. 3D reconstruction does not improve agreement and results in an increase in surgical indications in proximal humeral fractures. J Orthop. 2018 Sep 06;15(4):967-970. doi: 10.1016/j.jor.2018.08.041. eCollection 2018 Dec. PMID: 30210203; PMCID: PMC6134158.
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Laryngeal paracoccidioidomycosis presenting as solitary true vocal fold disease.

IDCases

Eyer-Silva WA, Santana AC, Silva GARD, Azevedo MCVM, Barreto JLTMS, Neumann MA, Castro IJ, Basílio-de-Oliveira RP, Araujo LF, Ré NZ, Oliveira FM, Simas CJA, Sarvat MA, Ferry FRA.
PMID: 28966914
IDCases. 2017 Sep 14;10:71-74. doi: 10.1016/j.idcr.2017.09.003. eCollection 2017.

Paracoccidioidomycosis (PCM) is a systemic granulomatous disease caused by

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Eyer-Silva WA, Santana AC, Silva GARD, et al. Laryngeal paracoccidioidomycosis presenting as solitary true vocal fold disease. IDCases. 2017;10:71-74doi: 10.1016/j.idcr.2017.09.003.
Eyer-Silva, W. A., Santana, A. C., Silva, G. A. R. D., Azevedo, M. C. V. M., Barreto, J. L. T. M. S., Neumann, M. A., Castro, I. J., Basílio-de-Oliveira, R. P., Araujo, L. F., Ré, N. Z., Oliveira, F. M., Simas, C. J. A., Sarvat, M. A., & Ferry, F. R. A. (2017). Laryngeal paracoccidioidomycosis presenting as solitary true vocal fold disease. IDCases, 1071-74. https://doi.org/10.1016/j.idcr.2017.09.003
Eyer-Silva, Walter de Araujo, et al. "Laryngeal paracoccidioidomycosis presenting as solitary true vocal fold disease." IDCases vol. 10 (2017): 71-74. doi: https://doi.org/10.1016/j.idcr.2017.09.003
Eyer-Silva WA, Santana AC, Silva GARD, Azevedo MCVM, Barreto JLTMS, Neumann MA, Castro IJ, Basílio-de-Oliveira RP, Araujo LF, Ré NZ, Oliveira FM, Simas CJA, Sarvat MA, Ferry FRA. Laryngeal paracoccidioidomycosis presenting as solitary true vocal fold disease. IDCases. 2017 Sep 14;10:71-74. doi: 10.1016/j.idcr.2017.09.003. eCollection 2017. PMID: 28966914; PMCID: PMC5608563.
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Telomere length correlates with disease severity and inflammation in sickle cell disease.

Revista brasileira de hematologia e hemoterapia

Colella MP, Santana BA, Conran N, Tomazini V, Costa FF, Calado RT, Saad STO.
PMID: 28577651
Rev Bras Hematol Hemoter. 2017 Apr - Jun;39(2):140-145. doi: 10.1016/j.bjhh.2017.02.007. Epub 2017 Mar 11.

BACKGROUND: Telomeres, the ends of linear chromosomes, shorten during mitotic cell division and erosion may be aggravated by inflammation or proliferative and oxidative stress. As the bone marrow is under hyperproliferative pressure in sickle cell disease and several tissues...

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Colella MP, Santana BA, Conran N, et al. Telomere length correlates with disease severity and inflammation in sickle cell disease. Rev Bras Hematol Hemoter. 2017;39(2):140-145doi: 10.1016/j.bjhh.2017.02.007.
Colella, M. P., Santana, B. A., Conran, N., Tomazini, V., Costa, F. F., Calado, R. T., & Saad, S. T. O. (2017). Telomere length correlates with disease severity and inflammation in sickle cell disease. Revista brasileira de hematologia e hemoterapia, 39(2), 140-145. https://doi.org/10.1016/j.bjhh.2017.02.007
Colella, Marina Pereira, et al. "Telomere length correlates with disease severity and inflammation in sickle cell disease." Revista brasileira de hematologia e hemoterapia vol. 39,2 (2017): 140-145. doi: https://doi.org/10.1016/j.bjhh.2017.02.007
Colella MP, Santana BA, Conran N, Tomazini V, Costa FF, Calado RT, Saad STO. Telomere length correlates with disease severity and inflammation in sickle cell disease. Rev Bras Hematol Hemoter. 2017 Apr - Jun;39(2):140-145. doi: 10.1016/j.bjhh.2017.02.007. Epub 2017 Mar 11. PMID: 28577651; PMCID: PMC5457472.
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Stratigraphic Relations of the Ipubi Formation: Siliciclastic-Evaporitic Succession of the Araripe Basin.

Anais da Academia Brasileira de Ciencias

Fabin CE, Correia Filho OJ, Alencar ML, Barbosa JA, Miranda TS, Neumann VH, Gomes IF, Santana FR.
PMID: 29947671
An Acad Bras Cienc. 2018 Aug;90(2):2049-2071. doi: 10.1590/0001-3765201820170526. Epub 2018 Jun 25.

The Ipubi Formation represents the Aptian-Albian siliciclastic-evaporitic succession of Araripe Basin, NE Brazil. This succession comprises siliciclastic rocks (bituminous shales and claystones) and evaporites (gypsum and secondary anhydrite) and represents part of the lacustrine-shallow marine post-rift phase I. This...

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Fabin CE, Correia Filho OJ, Alencar ML, et al. Stratigraphic Relations of the Ipubi Formation: Siliciclastic-Evaporitic Succession of the Araripe Basin. An Acad Bras Cienc. 2018;90(2):2049-2071doi: 10.1590/0001-3765201820170526.
Fabin, C. E., Correia Filho, O. J., Alencar, M. L., Barbosa, J. A., Miranda, T. S., Neumann, V. H., Gomes, I. F., & Santana, F. R. (2018). Stratigraphic Relations of the Ipubi Formation: Siliciclastic-Evaporitic Succession of the Araripe Basin. Anais da Academia Brasileira de Ciencias, 90(2), 2049-2071. https://doi.org/10.1590/0001-3765201820170526
Fabin, Carlos E, et al. "Stratigraphic Relations of the Ipubi Formation: Siliciclastic-Evaporitic Succession of the Araripe Basin." Anais da Academia Brasileira de Ciencias vol. 90,2 (2018): 2049-2071. doi: https://doi.org/10.1590/0001-3765201820170526
Fabin CE, Correia Filho OJ, Alencar ML, Barbosa JA, Miranda TS, Neumann VH, Gomes IF, Santana FR. Stratigraphic Relations of the Ipubi Formation: Siliciclastic-Evaporitic Succession of the Araripe Basin. An Acad Bras Cienc. 2018 Aug;90(2):2049-2071. doi: 10.1590/0001-3765201820170526. Epub 2018 Jun 25. PMID: 29947671.
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A guided internet-delivered individually-tailored ACT-influenced cognitive behavioural intervention to improve psychosocial outcomes in breast cancer survivors (iNNOVBC): Study protocol.

Internet interventions

Mendes-Santos C, Weiderpass E, Santana R, Andersson G.
PMID: 30949435
Internet Interv. 2019 Feb 10;17:100236. doi: 10.1016/j.invent.2019.01.004. eCollection 2019 Sep.

BACKGROUND: Internet-delivered interventions can provide remarkable opportunities in addressing breast cancer survivors' unmet support care needs, as they present an effective strategy to improve care coordination and provide access to efficacious, cost-efficient and convenient survivorship care. Nevertheless, research focusing...

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Mendes-Santos C, Weiderpass E, Santana R, et al. A guided internet-delivered individually-tailored ACT-influenced cognitive behavioural intervention to improve psychosocial outcomes in breast cancer survivors (iNNOVBC): Study protocol. Internet Interv. 2019;17:100236doi: 10.1016/j.invent.2019.01.004.
Mendes-Santos, C., Weiderpass, E., Santana, R., & Andersson, G. (2019). A guided internet-delivered individually-tailored ACT-influenced cognitive behavioural intervention to improve psychosocial outcomes in breast cancer survivors (iNNOVBC): Study protocol. Internet interventions, 17100236. https://doi.org/10.1016/j.invent.2019.01.004
Mendes-Santos, Cristina, et al. "A guided internet-delivered individually-tailored ACT-influenced cognitive behavioural intervention to improve psychosocial outcomes in breast cancer survivors (iNNOVBC): Study protocol." Internet interventions vol. 17 (2019): 100236. doi: https://doi.org/10.1016/j.invent.2019.01.004
Mendes-Santos C, Weiderpass E, Santana R, Andersson G. A guided internet-delivered individually-tailored ACT-influenced cognitive behavioural intervention to improve psychosocial outcomes in breast cancer survivors (iNNOVBC): Study protocol. Internet Interv. 2019 Feb 10;17:100236. doi: 10.1016/j.invent.2019.01.004. eCollection 2019 Sep. PMID: 30949435; PMCID: PMC6430035.
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Corrigendum to "Direct visualization of the Wntless-induced redistribution of WNT1 in developing chick embryos" [Dev. Biol. 2018 15 439(2) 53-64].

Developmental biology

Galli LM, Santana F, Apollon C, Szabo LA, Ngo K, Burrus LW.
PMID: 29884440
Dev Biol. 2018 Sep 01;441(1):205. doi: 10.1016/j.ydbio.2018.05.025. Epub 2018 Jun 05.

No abstract available.

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Galli LM, Santana F, Apollon C, et al. Corrigendum to "Direct visualization of the Wntless-induced redistribution of WNT1 in developing chick embryos" [Dev. Biol. 2018 15 439(2) 53-64]. Dev Biol. 2018;441(1):205doi: 10.1016/j.ydbio.2018.05.025.
Galli, L. M., Santana, F., Apollon, C., Szabo, L. A., Ngo, K., & Burrus, L. W. (2018). Corrigendum to "Direct visualization of the Wntless-induced redistribution of WNT1 in developing chick embryos" [Dev. Biol. 2018 15 439(2) 53-64]. Developmental biology, 441(1), 205. https://doi.org/10.1016/j.ydbio.2018.05.025
Galli, Lisa M, et al. "Corrigendum to "Direct visualization of the Wntless-induced redistribution of WNT1 in developing chick embryos" [Dev. Biol. 2018 15 439(2) 53-64]." Developmental biology vol. 441,1 (2018): 205. doi: https://doi.org/10.1016/j.ydbio.2018.05.025
Galli LM, Santana F, Apollon C, Szabo LA, Ngo K, Burrus LW. Corrigendum to "Direct visualization of the Wntless-induced redistribution of WNT1 in developing chick embryos" [Dev. Biol. 2018 15 439(2) 53-64]. Dev Biol. 2018 Sep 01;441(1):205. doi: 10.1016/j.ydbio.2018.05.025. Epub 2018 Jun 05. PMID: 29884440.
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Subdose of human chorionic gonadotropin applied at the .

Animal reproduction

Ribeiro MO, Bittencourt RF, Feliciano MAR, Santana ALA, Silva MAA, Felix MD, Santana LR, Barbosa LP.
PMID: 33791033
Anim Reprod. 2020 Nov 25;17(4):e20200554. doi: 10.1590/1984-3143-AR2020-0554.

The objective of this study was to evaluate the effects of an hCG subdose applied at the

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Ribeiro MO, Bittencourt RF, Feliciano MAR, et al. Subdose of human chorionic gonadotropin applied at the . Anim Reprod. 2020;17(4):e20200554doi: 10.1590/1984-3143-AR2020-0554.
Ribeiro, M. O., Bittencourt, R. F., Feliciano, M. A. R., Santana, A. L. A., Silva, M. A. A., Felix, M. D., Santana, L. R., & Barbosa, L. P. (2020). Subdose of human chorionic gonadotropin applied at the . Animal reproduction, 17(4), e20200554. https://doi.org/10.1590/1984-3143-AR2020-0554
Ribeiro, Márcio de Oliveira, et al. "Subdose of human chorionic gonadotropin applied at the ." Animal reproduction vol. 17,4 (2020): e20200554. doi: https://doi.org/10.1590/1984-3143-AR2020-0554
Ribeiro MO, Bittencourt RF, Feliciano MAR, Santana ALA, Silva MAA, Felix MD, Santana LR, Barbosa LP. Subdose of human chorionic gonadotropin applied at the . Anim Reprod. 2020 Nov 25;17(4):e20200554. doi: 10.1590/1984-3143-AR2020-0554. PMID: 33791033; PMCID: PMC7995259.
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Construction and validation of an in-hospital transport simulation scenario.

Einstein (Sao Paulo, Brazil)

Santana ER, Piacezzi LHV, Lopes MCBT, Batista REA, Vancini-Campanharo CR, Góis AFT.
PMID: 35024757
Einstein (Sao Paulo). 2021 Sep 22;19:eAO5868. doi: 10.31744/einstein_journal/2021AO5868. eCollection 2021.

OBJECTIVE: To build and validate the content of a clinical simulation scenario for teaching in-hospital transport of critically ill patients.METHODS: A descriptive study of construction and validation of a clinical simulation scenario for teaching in-hospital transport. A scenario based...

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Santana ER, Piacezzi LHV, Lopes MCBT, et al. Construction and validation of an in-hospital transport simulation scenario. Einstein (Sao Paulo). 2021;19:eAO5868doi: 10.31744/einstein_journal/2021AO5868.
Santana, E. R., Piacezzi, L. H. V., Lopes, M. C. B. T., Batista, R. E. A., Vancini-Campanharo, C. R., & Góis, A. F. T. (2021). Construction and validation of an in-hospital transport simulation scenario. Einstein (Sao Paulo, Brazil), 19eAO5868. https://doi.org/10.31744/einstein_journal/2021AO5868
Santana, Ellen Reis, et al. "Construction and validation of an in-hospital transport simulation scenario." Einstein (Sao Paulo, Brazil) vol. 19 (2021): eAO5868. doi: https://doi.org/10.31744/einstein_journal/2021AO5868
Santana ER, Piacezzi LHV, Lopes MCBT, Batista REA, Vancini-Campanharo CR, Góis AFT. Construction and validation of an in-hospital transport simulation scenario. Einstein (Sao Paulo). 2021 Sep 22;19:eAO5868. doi: 10.31744/einstein_journal/2021AO5868. eCollection 2021. Portuguese. PMID: 35024757.
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Effects of Eugenol and Dehydrodieugenol B from .

Journal of natural products

Bittencourt-Mernak MI, Pinheiro NM, da Silva RC, Ponci V, Banzato R, Pinheiro AJMCR, Olivo CR, Tibério IFLC, Lima Neto LG, Santana FPR, Lago JHG, Prado CM.
PMID: 34264084
J Nat Prod. 2021 Aug 27;84(8):2282-2294. doi: 10.1021/acs.jnatprod.1c00386. Epub 2021 Jul 15.

Acute lung injury (ALI) is an important public health problem. The present work investigated whether dehydrodieugenol B treatment, a compound isolated from Brazilian plant

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Bittencourt-Mernak MI, Pinheiro NM, da Silva RC, et al. Effects of Eugenol and Dehydrodieugenol B from . J Nat Prod. 2021;84(8):2282-2294doi: 10.1021/acs.jnatprod.1c00386.
Bittencourt-Mernak, M. I., Pinheiro, N. M., da Silva, R. C., Ponci, V., Banzato, R., Pinheiro, A. J. M. C. R., Olivo, C. R., Tibério, I. F. L. C., Lima Neto, L. G., Santana, F. P. R., Lago, J. H. G., & Prado, C. M. (2021). Effects of Eugenol and Dehydrodieugenol B from . Journal of natural products, 84(8), 2282-2294. https://doi.org/10.1021/acs.jnatprod.1c00386
Bittencourt-Mernak, Márcia I, et al. "Effects of Eugenol and Dehydrodieugenol B from ." Journal of natural products vol. 84,8 (2021): 2282-2294. doi: https://doi.org/10.1021/acs.jnatprod.1c00386
Bittencourt-Mernak MI, Pinheiro NM, da Silva RC, Ponci V, Banzato R, Pinheiro AJMCR, Olivo CR, Tibério IFLC, Lima Neto LG, Santana FPR, Lago JHG, Prado CM. Effects of Eugenol and Dehydrodieugenol B from . J Nat Prod. 2021 Aug 27;84(8):2282-2294. doi: 10.1021/acs.jnatprod.1c00386. Epub 2021 Jul 15. PMID: 34264084.
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