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Localization of functional regions of the Rhizobium nodD product using hybrid nodD genes.

Plant molecular biology

Spaink HP, Wijffelman CA, Okker RJ, Lugtenberg BE.
PMID: 24272718
Plant Mol Biol. 1989 Jan;12(1):59-73. doi: 10.1007/BF00017448.

The flavonoid-inducible nod promoters of Rhizobium are positively regulated by the nodD gene which is highly conserved in various Rhizobium species. The nodD gene are functionally different in (i) their response to various exogenously added flavonoid inducers, (ii) the...

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Spaink HP, Wijffelman CA, Okker RJ, et al. Localization of functional regions of the Rhizobium nodD product using hybrid nodD genes. Plant Mol Biol. 1989;12(1):59-73doi: 10.1007/BF00017448.
Spaink, H. P., Wijffelman, C. A., Okker, R. J., & Lugtenberg, B. E. (1989). Localization of functional regions of the Rhizobium nodD product using hybrid nodD genes. Plant molecular biology, 12(1), 59-73. https://doi.org/10.1007/BF00017448
Spaink, H P, et al. "Localization of functional regions of the Rhizobium nodD product using hybrid nodD genes." Plant molecular biology vol. 12,1 (1989): 59-73. doi: https://doi.org/10.1007/BF00017448
Spaink HP, Wijffelman CA, Okker RJ, Lugtenberg BE. Localization of functional regions of the Rhizobium nodD product using hybrid nodD genes. Plant Mol Biol. 1989 Jan;12(1):59-73. doi: 10.1007/BF00017448. PMID: 24272718.
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The molecular basis of infection and nodulation by rhizobia: the ins and outs of sympathogenesis.

Annual review of phytopathology

Spaink HP.
PMID: 18999965
Annu Rev Phytopathol. 1995;33:345-68. doi: 10.1146/annurev.py.33.090195.002021.

No abstract available.

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Spaink HP. The molecular basis of infection and nodulation by rhizobia: the ins and outs of sympathogenesis. Annu Rev Phytopathol. 1995;33:345-68doi: 10.1146/annurev.py.33.090195.002021.
Spaink, H. P. (1995). The molecular basis of infection and nodulation by rhizobia: the ins and outs of sympathogenesis. Annual review of phytopathology, 33345-68. https://doi.org/10.1146/annurev.py.33.090195.002021
Spaink, H P. "The molecular basis of infection and nodulation by rhizobia: the ins and outs of sympathogenesis." Annual review of phytopathology vol. 33 (1995): 345-68. doi: https://doi.org/10.1146/annurev.py.33.090195.002021
Spaink HP. The molecular basis of infection and nodulation by rhizobia: the ins and outs of sympathogenesis. Annu Rev Phytopathol. 1995;33:345-68. doi: 10.1146/annurev.py.33.090195.002021. PMID: 18999965.
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RNA isolation method for single embryo transcriptome analysis in zebrafish.

BMC research notes

de Jong M, Rauwerda H, Bruning O, Verkooijen J, Spaink HP, Breit TM.
PMID: 20233395
BMC Res Notes. 2010 Mar 16;3:73. doi: 10.1186/1756-0500-3-73.

BACKGROUND: Transcriptome analysis during embryogenesis usually requires pooling of embryos to obtain sufficient RNA. Hence, the measured levels of gene-expression represent the average mRNA levels of pooled samples and the biological variation among individuals is confounded. This can irreversibly...

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de Jong M, Rauwerda H, Bruning O, et al. RNA isolation method for single embryo transcriptome analysis in zebrafish. BMC Res Notes. 2010;3:73doi: 10.1186/1756-0500-3-73.
de Jong, M., Rauwerda, H., Bruning, O., Verkooijen, J., Spaink, H. P., & Breit, T. M. (2010). RNA isolation method for single embryo transcriptome analysis in zebrafish. BMC research notes, 373. https://doi.org/10.1186/1756-0500-3-73
de Jong, Mark, et al. "RNA isolation method for single embryo transcriptome analysis in zebrafish." BMC research notes vol. 3 (2010): 73. doi: https://doi.org/10.1186/1756-0500-3-73
de Jong M, Rauwerda H, Bruning O, Verkooijen J, Spaink HP, Breit TM. RNA isolation method for single embryo transcriptome analysis in zebrafish. BMC Res Notes. 2010 Mar 16;3:73. doi: 10.1186/1756-0500-3-73. PMID: 20233395; PMCID: PMC2845602.
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Author Correction: Intestinal microbiome adjusts the innate immune setpoint during colonization through negative regulation of MyD88.

Nature communications

Koch BEV, Yang S, Lamers G, Stougaard J, Spaink HP.
PMID: 30692545
Nat Commun. 2019 Jan 28;10(1):526. doi: 10.1038/s41467-019-08456-y.

The original version of this Article contained an error in the spelling of the author Shuxin Yang, which was incorrectly given as Shuxing Yang. This has now been corrected in both the PDF and HTML versions of the Article.

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Koch BEV, Yang S, Lamers G, et al. Author Correction: Intestinal microbiome adjusts the innate immune setpoint during colonization through negative regulation of MyD88. Nat Commun. 2019;10(1):526doi: 10.1038/s41467-019-08456-y.
Koch, B. E. V., Yang, S., Lamers, G., Stougaard, J., & Spaink, H. P. (2019). Author Correction: Intestinal microbiome adjusts the innate immune setpoint during colonization through negative regulation of MyD88. Nature communications, 10(1), 526. https://doi.org/10.1038/s41467-019-08456-y
Koch, Bjørn E V, et al. "Author Correction: Intestinal microbiome adjusts the innate immune setpoint during colonization through negative regulation of MyD88." Nature communications vol. 10,1 (2019): 526. doi: https://doi.org/10.1038/s41467-019-08456-y
Koch BEV, Yang S, Lamers G, Stougaard J, Spaink HP. Author Correction: Intestinal microbiome adjusts the innate immune setpoint during colonization through negative regulation of MyD88. Nat Commun. 2019 Jan 28;10(1):526. doi: 10.1038/s41467-019-08456-y. PMID: 30692545; PMCID: PMC6349902.
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The Arabidopsis selenium-binding protein confers tolerance to toxic levels of selenium.

Functional plant biology : FPB

Agalou A, Roussis A, Spaink HP.
PMID: 32689184
Funct Plant Biol. 2005 Oct;32(10):881-890. doi: 10.1071/FP05090.

In the Arabidopsis genome there are three highly conserved homologues of the mammalian 56-kD selenium-binding protein (SBP). To study the function of SBP in this model plant, we used a transgenic approach by constitutively overexpressing and down-regulating the endogenous...

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Agalou A, Roussis A, Spaink HP. The Arabidopsis selenium-binding protein confers tolerance to toxic levels of selenium. Funct Plant Biol. 2005;32(10):881-890doi: 10.1071/FP05090.
Agalou, A., Roussis, A., & Spaink, H. P. (2005). The Arabidopsis selenium-binding protein confers tolerance to toxic levels of selenium. Functional plant biology : FPB, 32(10), 881-890. https://doi.org/10.1071/FP05090
Agalou, Adamantia, et al. "The Arabidopsis selenium-binding protein confers tolerance to toxic levels of selenium." Functional plant biology : FPB vol. 32,10 (2005): 881-890. doi: https://doi.org/10.1071/FP05090
Agalou A, Roussis A, Spaink HP. The Arabidopsis selenium-binding protein confers tolerance to toxic levels of selenium. Funct Plant Biol. 2005 Oct;32(10):881-890. doi: 10.1071/FP05090. PMID: 32689184.
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Author Correction: Rapid de novo assembly of the European eel genome from nanopore sequencing reads.

Scientific reports

Jansen HJ, Liem M, Jong-Raadsen SA, Dufour S, Weltzien FA, Swinkels W, Koelewijn A, Palstra AP, Pelster B, Spaink HP, van den Thillart GE, Dirks RP, Henkel CV.
PMID: 31114003
Sci Rep. 2019 May 22;9(1):7911. doi: 10.1038/s41598-019-44275-3.

A correction to this article has been published and is linked from the HTML and PDF versions of this paper. The error has not been fixed in the paper.

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Jansen HJ, Liem M, Jong-Raadsen SA, et al. Author Correction: Rapid de novo assembly of the European eel genome from nanopore sequencing reads. Sci Rep. 2019;9(1):7911doi: 10.1038/s41598-019-44275-3.
Jansen, H. J., Liem, M., Jong-Raadsen, S. A., Dufour, S., Weltzien, F. A., Swinkels, W., Koelewijn, A., Palstra, A. P., Pelster, B., Spaink, H. P., van den Thillart, G. E., Dirks, R. P., & Henkel, C. V. (2019). Author Correction: Rapid de novo assembly of the European eel genome from nanopore sequencing reads. Scientific reports, 9(1), 7911. https://doi.org/10.1038/s41598-019-44275-3
Jansen, Hans J, et al. "Author Correction: Rapid de novo assembly of the European eel genome from nanopore sequencing reads." Scientific reports vol. 9,1 (2019): 7911. doi: https://doi.org/10.1038/s41598-019-44275-3
Jansen HJ, Liem M, Jong-Raadsen SA, Dufour S, Weltzien FA, Swinkels W, Koelewijn A, Palstra AP, Pelster B, Spaink HP, van den Thillart GE, Dirks RP, Henkel CV. Author Correction: Rapid de novo assembly of the European eel genome from nanopore sequencing reads. Sci Rep. 2019 May 22;9(1):7911. doi: 10.1038/s41598-019-44275-3. PMID: 31114003; PMCID: PMC6529464.
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Rhizobium Lipooligosaccharides Rescue a Carrot Somatic Embryo Mutant.

The Plant cell

De Jong AJ, Heidstra R, Spaink HP, Hartog MV, Meijer EA, Hendriks T, Schiavo FL, Terzi M, Bisseling T, Van Kammen A, De Vries SC.
PMID: 12271077
Plant Cell. 1993 Jun;5(6):615-620. doi: 10.1105/tpc.5.6.615.

At a nonpermissive temperature, somatic embryos of the temperature-sensitive (ts) carrot cell mutant ts11 only proceed beyond the globular embryo stage in the presence of medium conditioned by wild-type embryos. The causative component in the conditioned medium has previously...

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De Jong AJ, Heidstra R, Spaink HP, et al. Rhizobium Lipooligosaccharides Rescue a Carrot Somatic Embryo Mutant. Plant Cell. 1993;5(6):615-620doi: 10.1105/tpc.5.6.615.
De Jong, A. J., Heidstra, R., Spaink, H. P., Hartog, M. V., Meijer, E. A., Hendriks, T., Schiavo, F. L., Terzi, M., Bisseling, T., Van Kammen, A., & De Vries, S. C. (1993). Rhizobium Lipooligosaccharides Rescue a Carrot Somatic Embryo Mutant. The Plant cell, 5(6), 615-620. https://doi.org/10.1105/tpc.5.6.615
De Jong, A. J., et al. "Rhizobium Lipooligosaccharides Rescue a Carrot Somatic Embryo Mutant." The Plant cell vol. 5,6 (1993): 615-620. doi: https://doi.org/10.1105/tpc.5.6.615
De Jong AJ, Heidstra R, Spaink HP, Hartog MV, Meijer EA, Hendriks T, Schiavo FL, Terzi M, Bisseling T, Van Kammen A, De Vries SC. Rhizobium Lipooligosaccharides Rescue a Carrot Somatic Embryo Mutant. Plant Cell. 1993 Jun;5(6):615-620. doi: 10.1105/tpc.5.6.615. PMID: 12271077; PMCID: PMC160299.
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Three-dimensional reconstruction and measurements of zebrafish larvae from high-throughput axial-view .

Biomedical optics express

Guo Y, Veneman WJ, Spaink HP, Verbeek FJ.
PMID: 28663894
Biomed Opt Express. 2017 Apr 26;8(5):2611-2634. doi: 10.1364/BOE.8.002611. eCollection 2017 May 01.

High-throughput imaging is applied to provide observations for accurate statements on phenomena in biology and this has been successfully applied in the domain of cells, i.e. cytomics. In the domain of whole organisms, we need to take the hurdles...

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Guo Y, Veneman WJ, Spaink HP, et al. Three-dimensional reconstruction and measurements of zebrafish larvae from high-throughput axial-view . Biomed Opt Express. 2017;8(5):2611-2634doi: 10.1364/BOE.8.002611.
Guo, Y., Veneman, W. J., Spaink, H. P., & Verbeek, F. J. (2017). Three-dimensional reconstruction and measurements of zebrafish larvae from high-throughput axial-view . Biomedical optics express, 8(5), 2611-2634. https://doi.org/10.1364/BOE.8.002611
Guo, Yuanhao, et al. "Three-dimensional reconstruction and measurements of zebrafish larvae from high-throughput axial-view ." Biomedical optics express vol. 8,5 (2017): 2611-2634. doi: https://doi.org/10.1364/BOE.8.002611
Guo Y, Veneman WJ, Spaink HP, Verbeek FJ. Three-dimensional reconstruction and measurements of zebrafish larvae from high-throughput axial-view . Biomed Opt Express. 2017 Apr 26;8(5):2611-2634. doi: 10.1364/BOE.8.002611. eCollection 2017 May 01. PMID: 28663894; PMCID: PMC5480501.
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[No title available]

F1000Research

Liem M, Jansen HJ, Dirks RP, Henkel CV, van Heusden GPH, Lemmers RJLF, Omer T, Shao S, Punt PJ, Spaink HP.
PMID: 30135709
F1000Res. 2017 May 03;6:618. doi: 10.12688/f1000research.11146.2. eCollection 2017.

No abstract available.

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Liem M, Jansen HJ, Dirks RP, et al. . F1000Res. 2017;6:618doi: 10.12688/f1000research.11146.2.
Liem, M., Jansen, H. J., Dirks, R. P., Henkel, C. V., van Heusden, G. P. H., Lemmers, R. J. L. F., Omer, T., Shao, S., Punt, P. J., & Spaink, H. P. (2017). . F1000Research, 6618. https://doi.org/10.12688/f1000research.11146.2
Liem, Michael, et al. "." F1000Research vol. 6 (2017): 618. doi: https://doi.org/10.12688/f1000research.11146.2
Liem M, Jansen HJ, Dirks RP, Henkel CV, van Heusden GPH, Lemmers RJLF, Omer T, Shao S, Punt PJ, Spaink HP. . F1000Res. 2017 May 03;6:618. doi: 10.12688/f1000research.11146.2. eCollection 2017. PMID: 30135709; PMCID: PMC6081980.
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Induction of pre-infection thread structures in the leguminous host plant by mitogenic lipo-oligosaccharides of Rhizobium.

Science (New York, N.Y.)

van Brussel AA, Bakhuizen R, van Spronsen PC, Spaink HP, Tak T, Lugtenberg BJ, Kijne JW.
PMID: 17800714
Science. 1992 Jul 03;257(5066):70-2. doi: 10.1126/science.257.5066.70.

Root nodules of leguminous plants are symbiotic organs in which Rhizobium bacteria fix nitrogen. Their formation requires the induction of a nodule meristem and the formation of a tubular structure, the infection thread, through which the rhizobia reach the...

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van Brussel AA, Bakhuizen R, van Spronsen PC, et al. Induction of pre-infection thread structures in the leguminous host plant by mitogenic lipo-oligosaccharides of Rhizobium. Science. 1992;257(5066):70-2doi: 10.1126/science.257.5066.70.
van Brussel, A. A., Bakhuizen, R., van Spronsen, P. C., Spaink, H. P., Tak, T., Lugtenberg, B. J., & Kijne, J. W. (1992). Induction of pre-infection thread structures in the leguminous host plant by mitogenic lipo-oligosaccharides of Rhizobium. Science (New York, N.Y.), 257(5066), 70-2. https://doi.org/10.1126/science.257.5066.70
van Brussel, A A, et al. "Induction of pre-infection thread structures in the leguminous host plant by mitogenic lipo-oligosaccharides of Rhizobium." Science (New York, N.Y.) vol. 257,5066 (1992): 70-2. doi: https://doi.org/10.1126/science.257.5066.70
van Brussel AA, Bakhuizen R, van Spronsen PC, Spaink HP, Tak T, Lugtenberg BJ, Kijne JW. Induction of pre-infection thread structures in the leguminous host plant by mitogenic lipo-oligosaccharides of Rhizobium. Science. 1992 Jul 03;257(5066):70-2. doi: 10.1126/science.257.5066.70. PMID: 17800714.
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Genetic and transcriptome characterization of model zebrafish cell lines.

Zebrafish

He S, Salas-Vidal E, Rueb S, Krens SF, Meijer AH, Snaar-Jagalska BE, Spaink HP.
PMID: 18377224
Zebrafish. 2006;3(4):441-53. doi: 10.1089/zeb.2006.3.441.

Compared with the increasing use of zebrafish as a model organism in many laboratories, zebrafish cell lines are still unexploited and limited in application, partly due to their unknown genetic and physiological properties. We characterize two zebrafish embryonic fibroblast...

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He S, Salas-Vidal E, Rueb S, et al. Genetic and transcriptome characterization of model zebrafish cell lines. Zebrafish. 2006;3(4):441-53doi: 10.1089/zeb.2006.3.441.
He, S., Salas-Vidal, E., Rueb, S., Krens, S. F., Meijer, A. H., Snaar-Jagalska, B. E., & Spaink, H. P. (2006). Genetic and transcriptome characterization of model zebrafish cell lines. Zebrafish, 3(4), 441-53. https://doi.org/10.1089/zeb.2006.3.441
He, Shuning, et al. "Genetic and transcriptome characterization of model zebrafish cell lines." Zebrafish vol. 3,4 (2006): 441-53. doi: https://doi.org/10.1089/zeb.2006.3.441
He S, Salas-Vidal E, Rueb S, Krens SF, Meijer AH, Snaar-Jagalska BE, Spaink HP. Genetic and transcriptome characterization of model zebrafish cell lines. Zebrafish. 2006;3(4):441-53. doi: 10.1089/zeb.2006.3.441. PMID: 18377224.
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Promoters in the nodulation region of the Rhizobium leguminosarum Sym plasmid pRL1JI.

Plant molecular biology

Spaink HP, Okker RJ, Wijffelman CA, Pees E, Lugtenberg BJ.
PMID: 24276795
Plant Mol Biol. 1987 Jan;9(1):27-39. doi: 10.1007/BF00017984.

A region of 16.8 kb of the Sym(biosis) plasmid pRL1JI of Rhizobium leguminosarum, consisting of the established 9.7 kb nodulation region which confers nodulation ability on Vicia hirsuta and a region of 7.1 kb which appeared to be necessary...

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Spaink HP, Okker RJ, Wijffelman CA, et al. Promoters in the nodulation region of the Rhizobium leguminosarum Sym plasmid pRL1JI. Plant Mol Biol. 1987;9(1):27-39doi: 10.1007/BF00017984.
Spaink, H. P., Okker, R. J., Wijffelman, C. A., Pees, E., & Lugtenberg, B. J. (1987). Promoters in the nodulation region of the Rhizobium leguminosarum Sym plasmid pRL1JI. Plant molecular biology, 9(1), 27-39. https://doi.org/10.1007/BF00017984
Spaink, H P, et al. "Promoters in the nodulation region of the Rhizobium leguminosarum Sym plasmid pRL1JI." Plant molecular biology vol. 9,1 (1987): 27-39. doi: https://doi.org/10.1007/BF00017984
Spaink HP, Okker RJ, Wijffelman CA, Pees E, Lugtenberg BJ. Promoters in the nodulation region of the Rhizobium leguminosarum Sym plasmid pRL1JI. Plant Mol Biol. 1987 Jan;9(1):27-39. doi: 10.1007/BF00017984. PMID: 24276795.
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