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Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation

STEM and diversity

Li F, Matny O, Sperschneider J, Upadhyaya NM.
GSID: X7M0XwwbrCMJ
F Li, NM Upadhyaya, J Sperschneider, O Matny… - Nature …, 2019 - nature.com

… diversity is crucial for the evolution of new traits, with mutation and sexual recombination as the main drivers of diversity … contributing to genetic diversity in asexual populations has been …

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Li, F., Upadhyaya, N. M., Sperschneider, J., Matny, O., Nguyen-Phuc, H., Mago, R., ... & Figueroa, M. (2019). Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation. Nature communications, 10(1), 1-15.
Li, Feng, et al. "Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation." Nature communications 10.1 (2019): 1-15.
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Changing the Game: Using Integrative Genomics to Probe Virulence Mechanisms of the Stem Rust Pathogen Puccinia graminis f. sp. tritici

STEM and diversify

Sperschneider J, Upadhyaya NM.
GSID: cTVt1kQDHkgJ
M Figueroa, NM Upadhyaya, J Sperschneider… - Frontiers in Plant …, 2016 - frontiersin.org

… stem … diversify sources of resistance with a broader focus beyond the Ug99 lineage, but also to ensure that multiple Sr genes are deployed in combination to guard against future stem …

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Figueroa, M., Upadhyaya, N. M., Sperschneider, J., Park, R. F., Szabo, L. J., Steffenson, B., ... & Dodds, P. N. (2016). Changing the game: using integrative genomics to probe virulence mechanisms of the stem rust pathogen Puccinia graminis f. sp. tritici. Frontiers in Plant Science, 7, 205.
Figueroa, Melania, et al. "Changing the game: using integrative genomics to probe virulence mechanisms of the stem rust pathogen Puccinia graminis f. sp. tritici." Frontiers in Plant Science 7 (2016): 205.
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Long reads and Hi-C sequencing illuminate the two-compartment genome of the model arbuscular mycorrhizal symbiont Rhizophagus irregularis.

The New phytologist

Yildirir G, Sperschneider J, Malar C M, Chen ECH, Iwasaki W, Cornell C, Corradi N.
PMID: 34747029
New Phytol. 2022 Feb;233(3):1097-1107. doi: 10.1111/nph.17842. Epub 2021 Nov 24.

Chromosome folding links genome structure with gene function by generating distinct nuclear compartments and topologically associating domains. In mammals, these undergo preferential interactions and regulate gene expression. However, their role in fungal genome biology is unclear. Here, we combine...

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Yildirir G, Sperschneider J, Malar C M, et al. Long reads and Hi-C sequencing illuminate the two-compartment genome of the model arbuscular mycorrhizal symbiont Rhizophagus irregularis. New Phytol. 2021;233(3):1097-1107doi: 10.1111/nph.17842.
Yildirir, G., Sperschneider, J., Malar C, M., Chen, E. C. H., Iwasaki, W., Cornell, C., & Corradi, N. (2022). Long reads and Hi-C sequencing illuminate the two-compartment genome of the model arbuscular mycorrhizal symbiont Rhizophagus irregularis. The New phytologist, 233(3), 1097-1107. https://doi.org/10.1111/nph.17842
Yildirir, Gökalp, et al. "Long reads and Hi-C sequencing illuminate the two-compartment genome of the model arbuscular mycorrhizal symbiont Rhizophagus irregularis." The New phytologist vol. 233,3 (2022): 1097-1107. doi: https://doi.org/10.1111/nph.17842
Yildirir G, Sperschneider J, Malar C M, Chen ECH, Iwasaki W, Cornell C, Corradi N. Long reads and Hi-C sequencing illuminate the two-compartment genome of the model arbuscular mycorrhizal symbiont Rhizophagus irregularis. New Phytol. 2022 Feb;233(3):1097-1107. doi: 10.1111/nph.17842. Epub 2021 Nov 24. PMID: 34747029.
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EffectorP 3.0: prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes.

Molecular plant-microbe interactions : MPMI

Sperschneider J, Dodds P.
PMID: 34698534
Mol Plant Microbe Interact. 2021 Oct 26; doi: 10.1094/MPMI-08-21-0201-R. Epub 2021 Oct 26.

Many fungi and oomycete species are devasting plant pathogens. These eukaryotic filamentous pathogens secrete effector proteins to facilitate plant infection. Fungi and oomycete pathogens have diverse infection strategies and their effectors generally do not share sequence homology. However, they...

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Sperschneider J, Dodds P. EffectorP 3.0: prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes. Mol Plant Microbe Interact. 2021;doi: 10.1094/MPMI-08-21-0201-R.
Sperschneider, J., & Dodds, P. (2021). EffectorP 3.0: prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes. Molecular plant-microbe interactions : MPMI, . https://doi.org/10.1094/MPMI-08-21-0201-R
Sperschneider, Jana, and Dodds, Peter. "EffectorP 3.0: prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes." Molecular plant-microbe interactions : MPMI vol. (2021). doi: https://doi.org/10.1094/MPMI-08-21-0201-R
Sperschneider J, Dodds P. EffectorP 3.0: prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes. Mol Plant Microbe Interact. 2021 Oct 26; doi: 10.1094/MPMI-08-21-0201-R. Epub 2021 Oct 26. PMID: 34698534.
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Mechanisms of Action of the KCa2-Negative Modulator AP30663, a Novel Compound in Development for Treatment of Atrial Fibrillation in Man.

Frontiers in pharmacology

Bentzen BH, Bomholtz SH, Simó-Vicens R, Folkersen L, Abildgaard L, Speerschneider T, Muthukumarasamy KM, Edvardsson N, Sørensen US, Grunnet M, Diness JG.
PMID: 32477117
Front Pharmacol. 2020 May 06;11:610. doi: 10.3389/fphar.2020.00610. eCollection 2020.

AIMS: Small conductance CaMETHODS AND RESULTS: Whole-cell and inside-out patch-clamp recordings of heterologously expressed KCONCLUSIONS: AP30663 is a novel negative allosteric modulator of K

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Bentzen BH, Bomholtz SH, Simó-Vicens R, et al. Mechanisms of Action of the KCa2-Negative Modulator AP30663, a Novel Compound in Development for Treatment of Atrial Fibrillation in Man. Front Pharmacol. 2020;11:610doi: 10.3389/fphar.2020.00610.
Bentzen, B. H., Bomholtz, S. H., Simó-Vicens, R., Folkersen, L., Abildgaard, L., Speerschneider, T., Muthukumarasamy, K. M., Edvardsson, N., Sørensen, U. S., Grunnet, M., & Diness, J. G. (2020). Mechanisms of Action of the KCa2-Negative Modulator AP30663, a Novel Compound in Development for Treatment of Atrial Fibrillation in Man. Frontiers in pharmacology, 11610. https://doi.org/10.3389/fphar.2020.00610
Bentzen, Bo Hjorth, et al. "Mechanisms of Action of the KCa2-Negative Modulator AP30663, a Novel Compound in Development for Treatment of Atrial Fibrillation in Man." Frontiers in pharmacology vol. 11 (2020): 610. doi: https://doi.org/10.3389/fphar.2020.00610
Bentzen BH, Bomholtz SH, Simó-Vicens R, Folkersen L, Abildgaard L, Speerschneider T, Muthukumarasamy KM, Edvardsson N, Sørensen US, Grunnet M, Diness JG. Mechanisms of Action of the KCa2-Negative Modulator AP30663, a Novel Compound in Development for Treatment of Atrial Fibrillation in Man. Front Pharmacol. 2020 May 06;11:610. doi: 10.3389/fphar.2020.00610. eCollection 2020. PMID: 32477117; PMCID: PMC7232560.
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Germany's sick health-care system.

Lancet (London, England)

Sperschneider T, Kleinert S.
PMID: 12480440
Lancet. 2002 Nov 30;360(9347):1758. doi: 10.1016/S0140-6736(02)11736-3.

No abstract available.

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Sperschneider T, Kleinert S. Germany's sick health-care system. Lancet. 2002;360(9347):1758doi: 10.1016/S0140-6736(02)11736-3.
Sperschneider, T., & Kleinert, S. (2002). Germany's sick health-care system. Lancet (London, England), 360(9347), 1758. https://doi.org/10.1016/S0140-6736(02)11736-3
Sperschneider, Toralf, and Kleinert, Sabine. "Germany's sick health-care system." Lancet (London, England) vol. 360,9347 (2002): 1758. doi: https://doi.org/10.1016/S0140-6736(02)11736-3
Sperschneider T, Kleinert S. Germany's sick health-care system. Lancet. 2002 Nov 30;360(9347):1758. doi: 10.1016/S0140-6736(02)11736-3. PMID: 12480440.
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The K.

Frontiers in pharmacology

Diness JG, Kirchhoff JE, Speerschneider T, Abildgaard L, Edvardsson N, Sørensen US, Grunnet M, Bentzen BH.
PMID: 32180722
Front Pharmacol. 2020 Feb 28;11:159. doi: 10.3389/fphar.2020.00159. eCollection 2020.

AIMS: To describe the effects of the KMETHODS AND RESULTS: Six healthy pigs with implanted pacemakers and equipped with a Holter monitor were used to compare the effects of increasing doses (0, 5, 10, 15, 20, and 25 mg/kg)...

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Diness JG, Kirchhoff JE, Speerschneider T, et al. The K. Front Pharmacol. 2020;11:159doi: 10.3389/fphar.2020.00159.
Diness, J. G., Kirchhoff, J. E., Speerschneider, T., Abildgaard, L., Edvardsson, N., Sørensen, U. S., Grunnet, M., & Bentzen, B. H. (2020). The K. Frontiers in pharmacology, 11159. https://doi.org/10.3389/fphar.2020.00159
Diness, Jonas Goldin, et al. "The K." Frontiers in pharmacology vol. 11 (2020): 159. doi: https://doi.org/10.3389/fphar.2020.00159
Diness JG, Kirchhoff JE, Speerschneider T, Abildgaard L, Edvardsson N, Sørensen US, Grunnet M, Bentzen BH. The K. Front Pharmacol. 2020 Feb 28;11:159. doi: 10.3389/fphar.2020.00159. eCollection 2020. PMID: 32180722; PMCID: PMC7059611.
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Diversifying selection in the wheat stem rust fungus acts predominantly on pathogen-associated gene families and reveals candidate effectors.

Frontiers in plant science

Sperschneider J, Ying H, Dodds PN, Gardiner DM, Upadhyaya NM, Singh KB, Manners JM, Taylor JM.
PMID: 25225496
Front Plant Sci. 2014 Sep 01;5:372. doi: 10.3389/fpls.2014.00372. eCollection 2014.

Plant pathogens cause severe losses to crop plants and threaten global food production. One striking example is the wheat stem rust fungus, Puccinia graminis f. sp. tritici, which can rapidly evolve new virulent pathotypes in response to resistant host...

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Sperschneider J, Ying H, Dodds PN, et al. Diversifying selection in the wheat stem rust fungus acts predominantly on pathogen-associated gene families and reveals candidate effectors. Front Plant Sci. 2014;5:372doi: 10.3389/fpls.2014.00372.
Sperschneider, J., Ying, H., Dodds, P. N., Gardiner, D. M., Upadhyaya, N. M., Singh, K. B., Manners, J. M., & Taylor, J. M. (2014). Diversifying selection in the wheat stem rust fungus acts predominantly on pathogen-associated gene families and reveals candidate effectors. Frontiers in plant science, 5372. https://doi.org/10.3389/fpls.2014.00372
Sperschneider, Jana, et al. "Diversifying selection in the wheat stem rust fungus acts predominantly on pathogen-associated gene families and reveals candidate effectors." Frontiers in plant science vol. 5 (2014): 372. doi: https://doi.org/10.3389/fpls.2014.00372
Sperschneider J, Ying H, Dodds PN, Gardiner DM, Upadhyaya NM, Singh KB, Manners JM, Taylor JM. Diversifying selection in the wheat stem rust fungus acts predominantly on pathogen-associated gene families and reveals candidate effectors. Front Plant Sci. 2014 Sep 01;5:372. doi: 10.3389/fpls.2014.00372. eCollection 2014. PMID: 25225496; PMCID: PMC4150398.
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Aftereffects of Spectrally Similar and Dissimilar Spectral Motion Adaptors in the Tritone Paradox.

Frontiers in psychology

Malek S, Sperschneider K.
PMID: 29867653
Front Psychol. 2018 May 08;9:677. doi: 10.3389/fpsyg.2018.00677. eCollection 2018.

Shepard tones consist of octave-spaced components, whose amplitudes are generated under a fixed bell-shaped spectral envelope. They are well defined in pitch chroma, but generate octave confusions that in turn can produce ambiguities in the perceived relative pitch heights...

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Malek S, Sperschneider K. Aftereffects of Spectrally Similar and Dissimilar Spectral Motion Adaptors in the Tritone Paradox. Front Psychol. 2018;9:677doi: 10.3389/fpsyg.2018.00677.
Malek, S., & Sperschneider, K. (2018). Aftereffects of Spectrally Similar and Dissimilar Spectral Motion Adaptors in the Tritone Paradox. Frontiers in psychology, 9677. https://doi.org/10.3389/fpsyg.2018.00677
Malek, Stephanie, and Sperschneider, Konrad. "Aftereffects of Spectrally Similar and Dissimilar Spectral Motion Adaptors in the Tritone Paradox." Frontiers in psychology vol. 9 (2018): 677. doi: https://doi.org/10.3389/fpsyg.2018.00677
Malek S, Sperschneider K. Aftereffects of Spectrally Similar and Dissimilar Spectral Motion Adaptors in the Tritone Paradox. Front Psychol. 2018 May 08;9:677. doi: 10.3389/fpsyg.2018.00677. eCollection 2018. PMID: 29867653; PMCID: PMC5953344.
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Comparative genomics of Australian isolates of the wheat stem rust pathogen Puccinia graminis f. sp. tritici reveals extensive polymorphism in candidate effector genes.

Frontiers in plant science

Upadhyaya NM, Garnica DP, Karaoglu H, Sperschneider J, Nemri A, Xu B, Mago R, Cuomo CA, Rathjen JP, Park RF, Ellis JG, Dodds PN.
PMID: 25620970
Front Plant Sci. 2015 Jan 08;5:759. doi: 10.3389/fpls.2014.00759. eCollection 2014.

The wheat stem rust fungus Puccinia graminis f. sp. tritici (Pgt) is one of the most destructive pathogens of wheat. In this study, a draft genome was built for a founder Australian Pgt isolate of pathotype (pt.) 21-0 (collected...

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Upadhyaya NM, Garnica DP, Karaoglu H, et al. Comparative genomics of Australian isolates of the wheat stem rust pathogen Puccinia graminis f. sp. tritici reveals extensive polymorphism in candidate effector genes. Front Plant Sci. 2015;5:759doi: 10.3389/fpls.2014.00759.
Upadhyaya, N. M., Garnica, D. P., Karaoglu, H., Sperschneider, J., Nemri, A., Xu, B., Mago, R., Cuomo, C. A., Rathjen, J. P., Park, R. F., Ellis, J. G., & Dodds, P. N. (2014). Comparative genomics of Australian isolates of the wheat stem rust pathogen Puccinia graminis f. sp. tritici reveals extensive polymorphism in candidate effector genes. Frontiers in plant science, 5759. https://doi.org/10.3389/fpls.2014.00759
Upadhyaya, Narayana M, et al. "Comparative genomics of Australian isolates of the wheat stem rust pathogen Puccinia graminis f. sp. tritici reveals extensive polymorphism in candidate effector genes." Frontiers in plant science vol. 5 (2014): 759. doi: https://doi.org/10.3389/fpls.2014.00759
Upadhyaya NM, Garnica DP, Karaoglu H, Sperschneider J, Nemri A, Xu B, Mago R, Cuomo CA, Rathjen JP, Park RF, Ellis JG, Dodds PN. Comparative genomics of Australian isolates of the wheat stem rust pathogen Puccinia graminis f. sp. tritici reveals extensive polymorphism in candidate effector genes. Front Plant Sci. 2015 Jan 08;5:759. doi: 10.3389/fpls.2014.00759. eCollection 2014. PMID: 25620970; PMCID: PMC4288056.
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Long reads and Hi-C sequencing illuminate the two-compartment genome of the model arbuscular mycorrhizal symbiont Rhizophagus irregularis.

The New phytologist

Yildirir G, Sperschneider J, Malar C M, Chen ECH, Iwasaki W, Cornell C, Corradi N.
PMID: 34747029
New Phytol. 2021 Nov 06; doi: 10.1111/nph.17842. Epub 2021 Nov 06.

Chromosome folding links genome structure with gene function by generating distinct nuclear compartments and topologically associating domains. In mammals, these undergo preferential interactions and regulate gene expression. However, their role in fungal genome biology is unclear. Here, we combine...

Cite
Yildirir G, Sperschneider J, Malar C M, et al. Long reads and Hi-C sequencing illuminate the two-compartment genome of the model arbuscular mycorrhizal symbiont Rhizophagus irregularis. New Phytol. 2021;doi: 10.1111/nph.17842.
Yildirir, G., Sperschneider, J., Malar C, M., Chen, E. C. H., Iwasaki, W., Cornell, C., & Corradi, N. (2021). Long reads and Hi-C sequencing illuminate the two-compartment genome of the model arbuscular mycorrhizal symbiont Rhizophagus irregularis. The New phytologist, . https://doi.org/10.1111/nph.17842
Yildirir, Gökalp, et al. "Long reads and Hi-C sequencing illuminate the two-compartment genome of the model arbuscular mycorrhizal symbiont Rhizophagus irregularis." The New phytologist vol. (2021). doi: https://doi.org/10.1111/nph.17842
Yildirir G, Sperschneider J, Malar C M, Chen ECH, Iwasaki W, Cornell C, Corradi N. Long reads and Hi-C sequencing illuminate the two-compartment genome of the model arbuscular mycorrhizal symbiont Rhizophagus irregularis. New Phytol. 2021 Nov 06; doi: 10.1111/nph.17842. Epub 2021 Nov 06. PMID: 34747029.
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Evaluation of Secretion Prediction Highlights Differing Approaches Needed for Oomycete and Fungal Effectors.

Frontiers in plant science

Sperschneider J, Williams AH, Hane JK, Singh KB, Taylor JM.
PMID: 26779196
Front Plant Sci. 2015 Dec 23;6:1168. doi: 10.3389/fpls.2015.01168. eCollection 2015.

The steadily increasing number of sequenced fungal and oomycete genomes has enabled detailed studies of how these eukaryotic microbes infect plants and cause devastating losses in food crops. During infection, fungal and oomycete pathogens secrete effector molecules which manipulate...

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Sperschneider J, Williams AH, Hane JK, et al. Evaluation of Secretion Prediction Highlights Differing Approaches Needed for Oomycete and Fungal Effectors. Front Plant Sci. 2015;6:1168doi: 10.3389/fpls.2015.01168.
Sperschneider, J., Williams, A. H., Hane, J. K., Singh, K. B., & Taylor, J. M. (2015). Evaluation of Secretion Prediction Highlights Differing Approaches Needed for Oomycete and Fungal Effectors. Frontiers in plant science, 61168. https://doi.org/10.3389/fpls.2015.01168
Sperschneider, Jana, et al. "Evaluation of Secretion Prediction Highlights Differing Approaches Needed for Oomycete and Fungal Effectors." Frontiers in plant science vol. 6 (2015): 1168. doi: https://doi.org/10.3389/fpls.2015.01168
Sperschneider J, Williams AH, Hane JK, Singh KB, Taylor JM. Evaluation of Secretion Prediction Highlights Differing Approaches Needed for Oomycete and Fungal Effectors. Front Plant Sci. 2015 Dec 23;6:1168. doi: 10.3389/fpls.2015.01168. eCollection 2015. PMID: 26779196; PMCID: PMC4688413.
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Showing 1 to 12 of 14 entries