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A central support system can facilitate implementation and sustainability of a Classroom-based Undergraduate Research Experience (CURE) in Genomics.

CBE life sciences education

Lopatto D, Hauser C, Jones CJ, Paetkau D, Chandrasekaran V, Dunbar D, MacKinnon C, Stamm J, Alvarez C, Barnard D, Bedard JE, Bednarski AE, Bhalla S, Braverman JM, Burg M, Chung HM, DeJong RJ, DiAngelo JR, Du C, Eckdahl TT, Emerson J, Frary A, Frohlich D, Goodman AL, Gosser Y, Govind S, Haberman A, Hark AT, Hoogewerf A, Johnson D, Kadlec L, Kaehler M, Key SC, Kokan NP, Kopp OR, Kuleck GA, Lopilato J, Martinez-Cruzado JC, McNeil G, Mel S, Nagengast A, Overvoorde PJ, Parrish S, Preuss ML, Reed LD, Regisford EG, Revie D, Robic S, Roecklien-Canfield JA, Rosenwald AG, Rubin MR, Saville K, Schroeder S, Sharif KA, Shaw M, Skuse G, Smith CD, Smith M, Smith ST, Spana EP, Spratt M, Sreenivasan A, Thompson JS, Wawersik M, Wolyniak MJ, Youngblom J, Zhou L, Buhler J, Mardis E, Leung W, Shaffer CD, Threlfall J, Elgin SC.
PMID: 25452493
CBE Life Sci Educ. 2014;13(4):711-23. doi: 10.1187/cbe.13-10-0200.

In their 2012 report, the President's Council of Advisors on Science and Technology advocated "replacing standard science laboratory courses with discovery-based research courses"-a challenging proposition that presents practical and pedagogical difficulties. In this paper, we describe our collective experiences...

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Lopatto D, Hauser C, Jones CJ, et al. A central support system can facilitate implementation and sustainability of a Classroom-based Undergraduate Research Experience (CURE) in Genomics. CBE Life Sci Educ. 2014;13(4):711-23doi: 10.1187/cbe.13-10-0200.
Lopatto, D., Hauser, C., Jones, C. J., Paetkau, D., Chandrasekaran, V., Dunbar, D., MacKinnon, C., Stamm, J., Alvarez, C., Barnard, D., Bedard, J. E., Bednarski, A. E., Bhalla, S., Braverman, J. M., Burg, M., Chung, H. M., DeJong, R. J., DiAngelo, J. R., Du, C., Eckdahl, T. T., Emerson, J., Frary, A., Frohlich, D., Goodman, A. L., Gosser, Y., Govind, S., Haberman, A., Hark, A. T., Hoogewerf, A., Johnson, D., Kadlec, L., Kaehler, M., Key, S. C., Kokan, N. P., Kopp, O. R., Kuleck, G. A., Lopilato, J., Martinez-Cruzado, J. C., McNeil, G., Mel, S., Nagengast, A., Overvoorde, P. J., Parrish, S., Preuss, M. L., Reed, L. D., Regisford, E. G., Revie, D., Robic, S., Roecklien-Canfield, J. A., Rosenwald, A. G., Rubin, M. R., Saville, K., Schroeder, S., Sharif, K. A., Shaw, M., Skuse, G., Smith, C. D., Smith, M., Smith, S. T., Spana, E. P., Spratt, M., Sreenivasan, A., Thompson, J. S., Wawersik, M., Wolyniak, M. J., Youngblom, J., Zhou, L., Buhler, J., Mardis, E., Leung, W., Shaffer, C. D., Threlfall, J., & Elgin, S. C. (2014). A central support system can facilitate implementation and sustainability of a Classroom-based Undergraduate Research Experience (CURE) in Genomics. CBE life sciences education, 13(4), 711-23. https://doi.org/10.1187/cbe.13-10-0200
Lopatto, David, et al. "A central support system can facilitate implementation and sustainability of a Classroom-based Undergraduate Research Experience (CURE) in Genomics." CBE life sciences education vol. 13,4 (2014): 711-23. doi: https://doi.org/10.1187/cbe.13-10-0200
Lopatto D, Hauser C, Jones CJ, Paetkau D, Chandrasekaran V, Dunbar D, MacKinnon C, Stamm J, Alvarez C, Barnard D, Bedard JE, Bednarski AE, Bhalla S, Braverman JM, Burg M, Chung HM, DeJong RJ, DiAngelo JR, Du C, Eckdahl TT, Emerson J, Frary A, Frohlich D, Goodman AL, Gosser Y, Govind S, Haberman A, Hark AT, Hoogewerf A, Johnson D, Kadlec L, Kaehler M, Key SC, Kokan NP, Kopp OR, Kuleck GA, Lopilato J, Martinez-Cruzado JC, McNeil G, Mel S, Nagengast A, Overvoorde PJ, Parrish S, Preuss ML, Reed LD, Regisford EG, Revie D, Robic S, Roecklien-Canfield JA, Rosenwald AG, Rubin MR, Saville K, Schroeder S, Sharif KA, Shaw M, Skuse G, Smith CD, Smith M, Smith ST, Spana EP, Spratt M, Sreenivasan A, Thompson JS, Wawersik M, Wolyniak MJ, Youngblom J, Zhou L, Buhler J, Mardis E, Leung W, Shaffer CD, Threlfall J, Elgin SC. A central support system can facilitate implementation and sustainability of a Classroom-based Undergraduate Research Experience (CURE) in Genomics. CBE Life Sci Educ. 2014;13(4):711-23. doi: 10.1187/cbe.13-10-0200. PMID: 25452493; PMCID: PMC4255357.
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Enantioselective Extraction of Dinitrophenyl Amino Acids Mediated by Lipophilic Deoxyguanosine Derivatives: Chiral Discrimination by Self-Assembly.

Angewandte Chemie (International ed. in English)

Andrisano V, Gottarelli G, Masiero S, Heijne EH, Pieraccini S, Spada GP.
PMID: 10458795
Angew Chem Int Ed Engl. 1999 Aug;38(16):2386-2388. doi: 10.1002/(sici)1521-3773(19990816)38:16<2386::aid-anie2386>3.0.co;2-s.

The transfer of potassium salts of dinitrophenyl amino acids from water to chloroform by the lipophilic guanosine derivative 1 takes place enantioselectively. Depending on the K(+):1 ratio, G-quartets of 1 self-assemble into octamers (O) or polymers.

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Andrisano V, Gottarelli G, Masiero S, et al. Enantioselective Extraction of Dinitrophenyl Amino Acids Mediated by Lipophilic Deoxyguanosine Derivatives: Chiral Discrimination by Self-Assembly. Angew Chem Int Ed Engl. 1999;38(16):2386-2388doi: 10.1002/(sici)1521-3773(19990816)38:16<2386::aid-anie2386>3.0.co;2-s.
Andrisano, V., Gottarelli, G., Masiero, S., Heijne, E. H., Pieraccini, S., & Spada, G. P. (1999). Enantioselective Extraction of Dinitrophenyl Amino Acids Mediated by Lipophilic Deoxyguanosine Derivatives: Chiral Discrimination by Self-Assembly. Angewandte Chemie (International ed. in English), 38(16), 2386-2388. https://doi.org/10.1002/(sici)1521-3773(19990816)38:16<2386::aid-anie2386>3.0.co;2-s
Andrisano, et al. "Enantioselective Extraction of Dinitrophenyl Amino Acids Mediated by Lipophilic Deoxyguanosine Derivatives: Chiral Discrimination by Self-Assembly." Angewandte Chemie (International ed. in English) vol. 38,16 (1999): 2386-2388. doi: https://doi.org/10.1002/(sici)1521-3773(19990816)38:16<2386::aid-anie2386>3.0.co;2-s
Andrisano V, Gottarelli G, Masiero S, Heijne EH, Pieraccini S, Spada GP. Enantioselective Extraction of Dinitrophenyl Amino Acids Mediated by Lipophilic Deoxyguanosine Derivatives: Chiral Discrimination by Self-Assembly. Angew Chem Int Ed Engl. 1999 Aug;38(16):2386-2388. doi: 10.1002/(sici)1521-3773(19990816)38:16<2386::aid-anie2386>3.0.co;2-s. PMID: 10458795.
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Synthesis of Secondary Amines via N-(Benzoyloxy)amines and Organoboranes.

The Journal of organic chemistry

Phanstiel O, Wang QX, Powell DH, Ospina MP, Leeson BA.
PMID: 11674150
J Org Chem. 1999 Feb 05;64(3):803-806. doi: 10.1021/jo981613l.

A variety of primary amines (R-NH(2)) were converted to their corresponding N-(benzoyloxy)amines (i.e., R-NHOCOPh) under biphasic conditions in excellent yields (63-90%). The intermediate N-(benzoyloxy)amines were converted to their N-ethylamine derivatives upon reaction with triethylborane in THF in good yield...

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Phanstiel O, Wang QX, Powell DH, et al. Synthesis of Secondary Amines via N-(Benzoyloxy)amines and Organoboranes. J Org Chem. 1999;64(3):803-806doi: 10.1021/jo981613l.
Phanstiel, O., Wang, Q. X., Powell, D. H., Ospina, M. P., & Leeson, B. A. (1999). Synthesis of Secondary Amines via N-(Benzoyloxy)amines and Organoboranes. The Journal of organic chemistry, 64(3), 803-806. https://doi.org/10.1021/jo981613l
Phanstiel, O., et al. "Synthesis of Secondary Amines via N-(Benzoyloxy)amines and Organoboranes." The Journal of organic chemistry vol. 64,3 (1999): 803-806. doi: https://doi.org/10.1021/jo981613l
Phanstiel O, Wang QX, Powell DH, Ospina MP, Leeson BA. Synthesis of Secondary Amines via N-(Benzoyloxy)amines and Organoboranes. J Org Chem. 1999 Feb 05;64(3):803-806. doi: 10.1021/jo981613l. PMID: 11674150.
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Doped nematic phases: a tool for amplifying and detecting chirality.

Enantiomer

Proni G, Spada GP.
PMID: 11570423
Enantiomer. 2001;6(2):171-9.

Doping nematic liquid crystals with non-racemic chiral compounds induces twisted nematics (cholesteric phases). This phenomenon allows the detection via spectroscopic or non-spectroscopic methods of chiral compounds through the detection (and eventually quantification) of the macroscopic induced cholesteric twist.

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Proni G, Spada GP. Doped nematic phases: a tool for amplifying and detecting chirality. Enantiomer. 2001;6(2):171-9
Proni, G., & Spada, G. P. (2001). Doped nematic phases: a tool for amplifying and detecting chirality. Enantiomer, 6(2), 171-9.
Proni, G, and Spada, G P. "Doped nematic phases: a tool for amplifying and detecting chirality." Enantiomer vol. 6,2 (2001): 171-9.
Proni G, Spada GP. Doped nematic phases: a tool for amplifying and detecting chirality. Enantiomer. 2001;6(2):171-9. PMID: 11570423.
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Internal energy deposition in chemical ionization/tandem mass spectrometry.

Journal of the American Society for Mass Spectrometry

Ospina MP, Powell DH, Yost RA.
PMID: 12586459
J Am Soc Mass Spectrom. 2003 Feb;14(2):102-9. doi: 10.1016/S1044-0305(02)00814-0.

The efficiency of the collision-induced dissociation (CID) process as a function of the internal energy deposited into the ion during the ionization event was evaluated. (M + H)+ ions of pyrrole, pyrrolidine, pyridine and piperidine (five and six-membered ring...

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Ospina MP, Powell DH, Yost RA. Internal energy deposition in chemical ionization/tandem mass spectrometry. J Am Soc Mass Spectrom. 2003;14(2):102-9doi: 10.1016/S1044-0305(02)00814-0.
Ospina, M. P., Powell, D. H., & Yost, R. A. (2003). Internal energy deposition in chemical ionization/tandem mass spectrometry. Journal of the American Society for Mass Spectrometry, 14(2), 102-9. https://doi.org/10.1016/S1044-0305(02)00814-0
Ospina, Maria P, et al. "Internal energy deposition in chemical ionization/tandem mass spectrometry." Journal of the American Society for Mass Spectrometry vol. 14,2 (2003): 102-9. doi: https://doi.org/10.1016/S1044-0305(02)00814-0
Ospina MP, Powell DH, Yost RA. Internal energy deposition in chemical ionization/tandem mass spectrometry. J Am Soc Mass Spectrom. 2003 Feb;14(2):102-9. doi: 10.1016/S1044-0305(02)00814-0. PMID: 12586459.
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Conformational analysis in solution of C(2)-symmetric 1, 1'-binaphthyl derivatives by circular dichroism spectroscopy and cholesteric induction in nematic mesophases.

The Journal of organic chemistry

Proni G, Spada GP, Lustenberger P, Welti R, Diederich F.
PMID: 10970290
J Org Chem. 2000 Sep 08;65(18):5522-7. doi: 10.1021/jo0001683.

The twisting ability of a series of 1,1'-binaphthalene compounds used as dopants in nematic solvents has been related to the dihedral angle theta between the two naphthalene moieties. While in the case of the more flexible compounds the sign...

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Proni G, Spada GP, Lustenberger P, et al. Conformational analysis in solution of C(2)-symmetric 1, 1'-binaphthyl derivatives by circular dichroism spectroscopy and cholesteric induction in nematic mesophases. J Org Chem. 2000;65(18):5522-7doi: 10.1021/jo0001683.
Proni, G., Spada, G. P., Lustenberger, P., Welti, R., & Diederich, F. (2000). Conformational analysis in solution of C(2)-symmetric 1, 1'-binaphthyl derivatives by circular dichroism spectroscopy and cholesteric induction in nematic mesophases. The Journal of organic chemistry, 65(18), 5522-7. https://doi.org/10.1021/jo0001683
Proni, et al. "Conformational analysis in solution of C(2)-symmetric 1, 1'-binaphthyl derivatives by circular dichroism spectroscopy and cholesteric induction in nematic mesophases." The Journal of organic chemistry vol. 65,18 (2000): 5522-7. doi: https://doi.org/10.1021/jo0001683
Proni G, Spada GP, Lustenberger P, Welti R, Diederich F. Conformational analysis in solution of C(2)-symmetric 1, 1'-binaphthyl derivatives by circular dichroism spectroscopy and cholesteric induction in nematic mesophases. J Org Chem. 2000 Sep 08;65(18):5522-7. doi: 10.1021/jo0001683. PMID: 10970290.
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Classical decays in decoherent quantum maps.

Physical review letters

García-Mata I, Saraceno M, Spina ME.
PMID: 12935077
Phys Rev Lett. 2003 Aug 08;91(6):064101. doi: 10.1103/PhysRevLett.91.064101. Epub 2003 Aug 05.

The linear entropy and the Loschmidt echo have proved to be of interest recently in the context of quantum information and of the quantum to classical transitions. We study the asymptotic long-time behavior of these quantities for open quantum...

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García-Mata I, Saraceno M, Spina ME. Classical decays in decoherent quantum maps. Phys Rev Lett. 2003;91(6):064101doi: 10.1103/PhysRevLett.91.064101.
García-Mata, I., Saraceno, M., & Spina, M. E. (2003). Classical decays in decoherent quantum maps. Physical review letters, 91(6), 064101. https://doi.org/10.1103/PhysRevLett.91.064101
García-Mata, Ignacio, et al. "Classical decays in decoherent quantum maps." Physical review letters vol. 91,6 (2003): 064101. doi: https://doi.org/10.1103/PhysRevLett.91.064101
García-Mata I, Saraceno M, Spina ME. Classical decays in decoherent quantum maps. Phys Rev Lett. 2003 Aug 08;91(6):064101. doi: 10.1103/PhysRevLett.91.064101. Epub 2003 Aug 05. PMID: 12935077.
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[Contribution to the historical study of climatology].

Annali di medicina navale

SPINA G.
PMID: 13445023
Ann Med Nav (Roma). 1957 Mar-Apr;62(2):216-20.

No abstract available.

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SPINA G. Contributo allo studio storico della climatologia. [Contribution to the historical study of climatology]. Ann Med Nav (Roma). 1957;62(2):216-20
SPINA, G. (1957). Contributo allo studio storico della climatologia. [Contribution to the historical study of climatology]. Annali di medicina navale, 62(2), 216-20.
SPINA, G. "Contributo allo studio storico della climatologia." [Contribution to the historical study of climatology]. Annali di medicina navale vol. 62,2 (1957): 216-20.
SPINA G. Contributo allo studio storico della climatologia. [Contribution to the historical study of climatology]. Ann Med Nav (Roma). 1957 Mar-Apr;62(2):216-20. Italian. PMID: 13445023.
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The direct conversion of light into continuous mechanical energy by photoreversible self-assembly: a prototype of a light-powered engine.

Angewandte Chemie (International ed. in English)

Masiero S, Lena S, Pieraccini S, Spada GP.
PMID: 18348122
Angew Chem Int Ed Engl. 2008;47(17):3184-7. doi: 10.1002/anie.200705313.

No abstract available.

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Masiero S, Lena S, Pieraccini S, et al. The direct conversion of light into continuous mechanical energy by photoreversible self-assembly: a prototype of a light-powered engine. Angew Chem Int Ed Engl. 2008;47(17):3184-7doi: 10.1002/anie.200705313.
Masiero, S., Lena, S., Pieraccini, S., & Spada, G. P. (2008). The direct conversion of light into continuous mechanical energy by photoreversible self-assembly: a prototype of a light-powered engine. Angewandte Chemie (International ed. in English), 47(17), 3184-7. https://doi.org/10.1002/anie.200705313
Masiero, Stefano, et al. "The direct conversion of light into continuous mechanical energy by photoreversible self-assembly: a prototype of a light-powered engine." Angewandte Chemie (International ed. in English) vol. 47,17 (2008): 3184-7. doi: https://doi.org/10.1002/anie.200705313
Masiero S, Lena S, Pieraccini S, Spada GP. The direct conversion of light into continuous mechanical energy by photoreversible self-assembly: a prototype of a light-powered engine. Angew Chem Int Ed Engl. 2008;47(17):3184-7. doi: 10.1002/anie.200705313. PMID: 18348122.
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Effect of strain on the photoisomerization and stability of a congested azobenzenophane: a combined experimental and computational study.

The journal of physical chemistry. A

Bassotti E, Carbone P, Credi A, Di Stefano M, Masiero S, Negri F, Orlandi G, Spada GP.
PMID: 17091939
J Phys Chem A. 2006 Nov 16;110(45):12385-94. doi: 10.1021/jp062428b.

The stability and trans-cis photoisomerization properties of a macrocycle constituted of two para-aminoazobenzene units connected by two methylene bridges have been investigated by a combination of experimental and computational techniques. Irradiation at 365 nm leads to a photostationary state...

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Bassotti E, Carbone P, Credi A, et al. Effect of strain on the photoisomerization and stability of a congested azobenzenophane: a combined experimental and computational study. J Phys Chem A. 2006;110(45):12385-94doi: 10.1021/jp062428b.
Bassotti, E., Carbone, P., Credi, A., Di Stefano, M., Masiero, S., Negri, F., Orlandi, G., & Spada, G. P. (2006). Effect of strain on the photoisomerization and stability of a congested azobenzenophane: a combined experimental and computational study. The journal of physical chemistry. A, 110(45), 12385-94. https://doi.org/10.1021/jp062428b
Bassotti, Elisa, et al. "Effect of strain on the photoisomerization and stability of a congested azobenzenophane: a combined experimental and computational study." The journal of physical chemistry. A vol. 110,45 (2006): 12385-94. doi: https://doi.org/10.1021/jp062428b
Bassotti E, Carbone P, Credi A, Di Stefano M, Masiero S, Negri F, Orlandi G, Spada GP. Effect of strain on the photoisomerization and stability of a congested azobenzenophane: a combined experimental and computational study. J Phys Chem A. 2006 Nov 16;110(45):12385-94. doi: 10.1021/jp062428b. PMID: 17091939.
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Chiral amplification in a cyanobiphenyl nematic liquid crystal doped with helicene-like derivatives.

Beilstein journal of organic chemistry

Ferrarini A, Pieraccini S, Masiero S, Spada GP.
PMID: 19936270
Beilstein J Org Chem. 2009 Oct 07;5:50. doi: 10.3762/bjoc.5.50.

The addition of a chiral non-racemic dopant to a nematic liquid crystal (LC) has the effect of transferring the molecular chirality to the phase organization and a chiral nematic phase is formed. This molecular chirality amplification in the LC...

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Ferrarini A, Pieraccini S, Masiero S, et al. Chiral amplification in a cyanobiphenyl nematic liquid crystal doped with helicene-like derivatives. Beilstein J Org Chem. 2009;5:50doi: 10.3762/bjoc.5.50.
Ferrarini, A., Pieraccini, S., Masiero, S., & Spada, G. P. (2009). Chiral amplification in a cyanobiphenyl nematic liquid crystal doped with helicene-like derivatives. Beilstein journal of organic chemistry, 550. https://doi.org/10.3762/bjoc.5.50
Ferrarini, Alberta, et al. "Chiral amplification in a cyanobiphenyl nematic liquid crystal doped with helicene-like derivatives." Beilstein journal of organic chemistry vol. 5 (2009): 50. doi: https://doi.org/10.3762/bjoc.5.50
Ferrarini A, Pieraccini S, Masiero S, Spada GP. Chiral amplification in a cyanobiphenyl nematic liquid crystal doped with helicene-like derivatives. Beilstein J Org Chem. 2009 Oct 07;5:50. doi: 10.3762/bjoc.5.50. PMID: 19936270; PMCID: PMC2779693.
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The interplay of configuration and conformation in helical perylenequinones: Insights from chirality induction in liquid crystals and calculations.

Beilstein journal of organic chemistry

Frezza E, Pieraccini S, Mazzini S, Ferrarini A, Spada GP.
PMID: 22423282
Beilstein J Org Chem. 2012;8:155-63. doi: 10.3762/bjoc.8.16. Epub 2012 Jan 24.

The chirality transfer in liquid crystals induced by two helical perylenequinones (namely, the natural compounds cercosporin and phleichrome) was investigated by integrating measurements of helical twisting power with a conformational analysis by DFT calculations and with the prediction of...

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Frezza E, Pieraccini S, Mazzini S, et al. The interplay of configuration and conformation in helical perylenequinones: Insights from chirality induction in liquid crystals and calculations. Beilstein J Org Chem. 2012;8:155-63doi: 10.3762/bjoc.8.16.
Frezza, E., Pieraccini, S., Mazzini, S., Ferrarini, A., & Spada, G. P. (2012). The interplay of configuration and conformation in helical perylenequinones: Insights from chirality induction in liquid crystals and calculations. Beilstein journal of organic chemistry, 8155-63. https://doi.org/10.3762/bjoc.8.16
Frezza, Elisa, et al. "The interplay of configuration and conformation in helical perylenequinones: Insights from chirality induction in liquid crystals and calculations." Beilstein journal of organic chemistry vol. 8 (2012): 155-63. doi: https://doi.org/10.3762/bjoc.8.16
Frezza E, Pieraccini S, Mazzini S, Ferrarini A, Spada GP. The interplay of configuration and conformation in helical perylenequinones: Insights from chirality induction in liquid crystals and calculations. Beilstein J Org Chem. 2012;8:155-63. doi: 10.3762/bjoc.8.16. Epub 2012 Jan 24. PMID: 22423282; PMCID: PMC3302075.
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