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Isolation and characterization of RAPD-based markers linked to the beet cyst nematode resistance locus (Hs1 (pat-1)) on chromosome 1 of B. patellaris.

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik

Salentijn EM, Arens-De Reuver MJ, Lange W, De Bock TS, Stiekema WJ, Klein-Lankhorst RM.
PMID: 24172934
Theor Appl Genet. 1995 May;90(6):885-91. doi: 10.1007/BF00222027.

A beet cyst nematode (BCN)-resistant telosomic addition of B. patellaris chromosome 1 in B. vulgaris was used to isolate 6 RAPD markers linked to the BCN resistance locus Hs1 (pat-1). Southern analysis showed that the analyzed RAPD products contain...

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Salentijn EM, Arens-De Reuver MJ, Lange W, et al. Isolation and characterization of RAPD-based markers linked to the beet cyst nematode resistance locus (Hs1 (pat-1)) on chromosome 1 of B. patellaris. Theor Appl Genet. 1995;90(6):885-91doi: 10.1007/BF00222027.
Salentijn, E. M., Arens-De Reuver, M. J., Lange, W., De Bock, T. S., Stiekema, W. J., & Klein-Lankhorst, R. M. (1995). Isolation and characterization of RAPD-based markers linked to the beet cyst nematode resistance locus (Hs1 (pat-1)) on chromosome 1 of B. patellaris. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 90(6), 885-91. https://doi.org/10.1007/BF00222027
Salentijn, E M, et al. "Isolation and characterization of RAPD-based markers linked to the beet cyst nematode resistance locus (Hs1 (pat-1)) on chromosome 1 of B. patellaris." TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik vol. 90,6 (1995): 885-91. doi: https://doi.org/10.1007/BF00222027
Salentijn EM, Arens-De Reuver MJ, Lange W, De Bock TS, Stiekema WJ, Klein-Lankhorst RM. Isolation and characterization of RAPD-based markers linked to the beet cyst nematode resistance locus (Hs1 (pat-1)) on chromosome 1 of B. patellaris. Theor Appl Genet. 1995 May;90(6):885-91. doi: 10.1007/BF00222027. PMID: 24172934.
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Introduction of foreign genes into potato cultivars Bintje and Désirée using an Agrobacterium tumefaciens binary vector.

Plant cell reports

Stiekema WJ, Heidekamp F, Louwerse JD, Verhoeven HA, Dijkhuis P.
PMID: 24241414
Plant Cell Rep. 1988 Jan;7(1):47-50. doi: 10.1007/BF00272976.

Tuber discs of Solanum tuberosum cv Bintje and Désirée were cocultivated with an Agrobacterium tumefaciens binary vector, carrying both the neomycine phosphotransferase and the E. coli β-glucuronidase gene fused to resp. the nopaline synthase and Cauliflower mosaic virus 35S...

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Stiekema WJ, Heidekamp F, Louwerse JD, et al. Introduction of foreign genes into potato cultivars Bintje and Désirée using an Agrobacterium tumefaciens binary vector. Plant Cell Rep. 1988;7(1):47-50doi: 10.1007/BF00272976.
Stiekema, W. J., Heidekamp, F., Louwerse, J. D., Verhoeven, H. A., & Dijkhuis, P. (1988). Introduction of foreign genes into potato cultivars Bintje and Désirée using an Agrobacterium tumefaciens binary vector. Plant cell reports, 7(1), 47-50. https://doi.org/10.1007/BF00272976
Stiekema, W J, et al. "Introduction of foreign genes into potato cultivars Bintje and Désirée using an Agrobacterium tumefaciens binary vector." Plant cell reports vol. 7,1 (1988): 47-50. doi: https://doi.org/10.1007/BF00272976
Stiekema WJ, Heidekamp F, Louwerse JD, Verhoeven HA, Dijkhuis P. Introduction of foreign genes into potato cultivars Bintje and Désirée using an Agrobacterium tumefaciens binary vector. Plant Cell Rep. 1988 Jan;7(1):47-50. doi: 10.1007/BF00272976. PMID: 24241414.
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Localization of Ds-transposon containing T-DNA inserts in the diploid transgenic potato: linkage to the R1 resistance gene against Phytophthora infestans (Mont.) de Bary.

Genome

El-Kharbotly A, Jacobs JM, Hekkert BT, Stiekema WJ, Pereira A, Jacobsen E, Ramanna MS.
PMID: 18469890
Genome. 1996 Apr;39(2):249-57. doi: 10.1139/g96-034.

The Dissociation transposable element (Ds) of maize containing NPTII was introduced into the diploid potato (Solanum tuberosum) clone J91-6400-A16 through Agrobacterium tumefaciens mediated transformation. Genomic DNA sequences flanking the T-DNAs from 312 transformants were obtained with inverse polymerase chain...

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El-Kharbotly A, Jacobs JM, Hekkert BT, et al. Localization of Ds-transposon containing T-DNA inserts in the diploid transgenic potato: linkage to the R1 resistance gene against Phytophthora infestans (Mont.) de Bary. Genome. 1996;39(2):249-57doi: 10.1139/g96-034.
El-Kharbotly, A., Jacobs, J. M., Hekkert, B. T., Stiekema, W. J., Pereira, A., Jacobsen, E., & Ramanna, M. S. (1996). Localization of Ds-transposon containing T-DNA inserts in the diploid transgenic potato: linkage to the R1 resistance gene against Phytophthora infestans (Mont.) de Bary. Genome, 39(2), 249-57. https://doi.org/10.1139/g96-034
El-Kharbotly, A, et al. "Localization of Ds-transposon containing T-DNA inserts in the diploid transgenic potato: linkage to the R1 resistance gene against Phytophthora infestans (Mont.) de Bary." Genome vol. 39,2 (1996): 249-57. doi: https://doi.org/10.1139/g96-034
El-Kharbotly A, Jacobs JM, Hekkert BT, Stiekema WJ, Pereira A, Jacobsen E, Ramanna MS. Localization of Ds-transposon containing T-DNA inserts in the diploid transgenic potato: linkage to the R1 resistance gene against Phytophthora infestans (Mont.) de Bary. Genome. 1996 Apr;39(2):249-57. doi: 10.1139/g96-034. PMID: 18469890.
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The MAR-Mediated Reduction in Position Effect Can Be Uncoupled from Copy Number-Dependent Expression in Transgenic Plants.

The Plant cell

Mlynarova L, Jansen RC, Conner AJ, Stiekema WJ, Nap JP.
PMID: 12242378
Plant Cell. 1995 May;7(5):599-609. doi: 10.1105/tpc.7.5.599.

To study the role of matrix-associated regions (MARs) in establishing independent chromatin domains in plants, two transgenes were cloned between chicken lysozyme A elements. These transgenes were the neomycin phosphotransferase (NPTII) gene under control of the nopaline synthase (nos)...

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Mlynarova L, Jansen RC, Conner AJ, et al. The MAR-Mediated Reduction in Position Effect Can Be Uncoupled from Copy Number-Dependent Expression in Transgenic Plants. Plant Cell. 1995;7(5):599-609doi: 10.1105/tpc.7.5.599.
Mlynarova, L., Jansen, R. C., Conner, A. J., Stiekema, W. J., & Nap, J. P. (1995). The MAR-Mediated Reduction in Position Effect Can Be Uncoupled from Copy Number-Dependent Expression in Transgenic Plants. The Plant cell, 7(5), 599-609. https://doi.org/10.1105/tpc.7.5.599
Mlynarova, L., et al. "The MAR-Mediated Reduction in Position Effect Can Be Uncoupled from Copy Number-Dependent Expression in Transgenic Plants." The Plant cell vol. 7,5 (1995): 599-609. doi: https://doi.org/10.1105/tpc.7.5.599
Mlynarova L, Jansen RC, Conner AJ, Stiekema WJ, Nap JP. The MAR-Mediated Reduction in Position Effect Can Be Uncoupled from Copy Number-Dependent Expression in Transgenic Plants. Plant Cell. 1995 May;7(5):599-609. doi: 10.1105/tpc.7.5.599. PMID: 12242378; PMCID: PMC160807.
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Identification and mapping of three flower colour loci of potato (S. tuberosum L.) by RFLP analysis.

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik

van Eck HJ, Jacobs JM, van Dijk J, Stiekema WJ, Jacobsen E.
PMID: 24193472
Theor Appl Genet. 1993 Apr;86(2):295-300. doi: 10.1007/BF00222091.

The inheritance of flower colour in diploid potato (2 n = 2x = 24), was found to be controlled by three unlinked loci D, F and P. To determine the allelism with previously described loci and to dissect this...

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van Eck HJ, Jacobs JM, van Dijk J, et al. Identification and mapping of three flower colour loci of potato (S. tuberosum L.) by RFLP analysis. Theor Appl Genet. 1993;86(2):295-300doi: 10.1007/BF00222091.
van Eck, H. J., Jacobs, J. M., van Dijk, J., Stiekema, W. J., & Jacobsen, E. (1993). Identification and mapping of three flower colour loci of potato (S. tuberosum L.) by RFLP analysis. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 86(2), 295-300. https://doi.org/10.1007/BF00222091
van Eck, H J, et al. "Identification and mapping of three flower colour loci of potato (S. tuberosum L.) by RFLP analysis." TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik vol. 86,2 (1993): 295-300. doi: https://doi.org/10.1007/BF00222091
van Eck HJ, Jacobs JM, van Dijk J, Stiekema WJ, Jacobsen E. Identification and mapping of three flower colour loci of potato (S. tuberosum L.) by RFLP analysis. Theor Appl Genet. 1993 Apr;86(2):295-300. doi: 10.1007/BF00222091. PMID: 24193472.
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Proteinase-inhibitor activity and wound-inducible gene expression of the 22-kDa potato-tuber proteins.

Planta

Suh SG, Stiekema WJ, Hannapel DJ.
PMID: 24194232
Planta. 1991 Jul;184(4):423-30. doi: 10.1007/BF00197888.

Using a proteinase-inhibition assay, we have demonstrated that the 22-kilodalton (kDa) potato (Solanum tuberosum L.) tuber proteins are strong inhibitors of serine proteinases. Two out of three purified proteins from the 22-kDa family of potato-tuber proteins were effective inhibitors...

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Suh SG, Stiekema WJ, Hannapel DJ. Proteinase-inhibitor activity and wound-inducible gene expression of the 22-kDa potato-tuber proteins. Planta. 1991;184(4):423-30doi: 10.1007/BF00197888.
Suh, S. G., Stiekema, W. J., & Hannapel, D. J. (1991). Proteinase-inhibitor activity and wound-inducible gene expression of the 22-kDa potato-tuber proteins. Planta, 184(4), 423-30. https://doi.org/10.1007/BF00197888
Suh, S G, et al. "Proteinase-inhibitor activity and wound-inducible gene expression of the 22-kDa potato-tuber proteins." Planta vol. 184,4 (1991): 423-30. doi: https://doi.org/10.1007/BF00197888
Suh SG, Stiekema WJ, Hannapel DJ. Proteinase-inhibitor activity and wound-inducible gene expression of the 22-kDa potato-tuber proteins. Planta. 1991 Jul;184(4):423-30. doi: 10.1007/BF00197888. PMID: 24194232.
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Molecular profiles of response to neoadjuvant chemoradiotherapy in oesophageal cancers to develop personalized treatment strategies.

Molecular oncology

de Klerk LK, Goedegebuure RSA, van Grieken NCT, van Sandick JW, Cats A, Stiekema J, van der Kaaij RT, Farina Sarasqueta A, van Engeland M, Jacobs MAJM, van Wanrooij RLJ, van der Peet DL, Thorner AR, Verheul HMW, Thijssen VLJL, Bass AJ, Derks S.
PMID: 33506581
Mol Oncol. 2021 Apr;15(4):901-914. doi: 10.1002/1878-0261.12907. Epub 2021 Feb 23.

Identification of molecular predictive markers of response to neoadjuvant chemoradiation could aid clinical decision-making in patients with localized oesophageal cancer. Therefore, we subjected pretreatment biopsies of 75 adenocarcinoma (OAC) and 16 squamous cell carcinoma (OSCC) patients to targeted next-generation...

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de Klerk LK, Goedegebuure RSA, van Grieken NCT, et al. Molecular profiles of response to neoadjuvant chemoradiotherapy in oesophageal cancers to develop personalized treatment strategies. Mol Oncol. 2021;15(4):901-914doi: 10.1002/1878-0261.12907.
de Klerk, L. K., Goedegebuure, R. S. A., van Grieken, N. C. T., van Sandick, J. W., Cats, A., Stiekema, J., van der Kaaij, R. T., Farina Sarasqueta, A., van Engeland, M., Jacobs, M. A. J. M., van Wanrooij, R. L. J., van der Peet, D. L., Thorner, A. R., Verheul, H. M. W., Thijssen, V. L. J. L., Bass, A. J., & Derks, S. (2021). Molecular profiles of response to neoadjuvant chemoradiotherapy in oesophageal cancers to develop personalized treatment strategies. Molecular oncology, 15(4), 901-914. https://doi.org/10.1002/1878-0261.12907
de Klerk, Leonie K, et al. "Molecular profiles of response to neoadjuvant chemoradiotherapy in oesophageal cancers to develop personalized treatment strategies." Molecular oncology vol. 15,4 (2021): 901-914. doi: https://doi.org/10.1002/1878-0261.12907
de Klerk LK, Goedegebuure RSA, van Grieken NCT, van Sandick JW, Cats A, Stiekema J, van der Kaaij RT, Farina Sarasqueta A, van Engeland M, Jacobs MAJM, van Wanrooij RLJ, van der Peet DL, Thorner AR, Verheul HMW, Thijssen VLJL, Bass AJ, Derks S. Molecular profiles of response to neoadjuvant chemoradiotherapy in oesophageal cancers to develop personalized treatment strategies. Mol Oncol. 2021 Apr;15(4):901-914. doi: 10.1002/1878-0261.12907. Epub 2021 Feb 23. PMID: 33506581; PMCID: PMC8024738.
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Characterization of cDNA for nodulin-75 of soybean: A gene product involved in early stages of root nodule development.

Proceedings of the National Academy of Sciences of the United States of America

Franssen HJ, Nap JP, Gloudemans T, Stiekema W, Van Dam H, Govers F, Louwerse J, Van Kammen A, Bisseling T.
PMID: 16593857
Proc Natl Acad Sci U S A. 1987 Jul;84(13):4495-9. doi: 10.1073/pnas.84.13.4495.

Establishment of a nitrogen-fixing root nodule is accompanied by a developmentally regulated expression of nodulin genes, only some of which, the so-called early nodulin genes, are expressed in stages preceding actual nitrogen fixation. We have isolated soybean cDNA clones...

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Franssen HJ, Nap JP, Gloudemans T, et al. Characterization of cDNA for nodulin-75 of soybean: A gene product involved in early stages of root nodule development. Proc Natl Acad Sci U S A. 1987;84(13):4495-9doi: 10.1073/pnas.84.13.4495.
Franssen, H. J., Nap, J. P., Gloudemans, T., Stiekema, W., Van Dam, H., Govers, F., Louwerse, J., Van Kammen, A., & Bisseling, T. (1987). Characterization of cDNA for nodulin-75 of soybean: A gene product involved in early stages of root nodule development. Proceedings of the National Academy of Sciences of the United States of America, 84(13), 4495-9. https://doi.org/10.1073/pnas.84.13.4495
Franssen, H J, et al. "Characterization of cDNA for nodulin-75 of soybean: A gene product involved in early stages of root nodule development." Proceedings of the National Academy of Sciences of the United States of America vol. 84,13 (1987): 4495-9. doi: https://doi.org/10.1073/pnas.84.13.4495
Franssen HJ, Nap JP, Gloudemans T, Stiekema W, Van Dam H, Govers F, Louwerse J, Van Kammen A, Bisseling T. Characterization of cDNA for nodulin-75 of soybean: A gene product involved in early stages of root nodule development. Proc Natl Acad Sci U S A. 1987 Jul;84(13):4495-9. doi: 10.1073/pnas.84.13.4495. PMID: 16593857; PMCID: PMC305116.
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The Tomato Sequencing Project, the first cornerstone of the International Solanaceae Project (SOL).

Comparative and functional genomics

Mueller LA, Tanksley SD, Giovannoni JJ, van Eck J, Stack S, Choi D, Kim BD, Chen M, Cheng Z, Li C, Ling H, Xue Y, Seymour G, Bishop G, Bryan G, Sharma R, Khurana J, Tyagi A, Chattopadhyay D, Singh NK, Stiekema W, Lindhout P, Jesse T, Lankhorst RK, Bouzayen M, Shibata D, Tabata S, Granell A, Botella MA, Giuliano G, Frusciante L, Causse M, Zamir D.
PMID: 18629226
Comp Funct Genomics. 2005;6(3):153-8. doi: 10.1002/cfg.468.

The genome of tomato (Solanum lycopersicum) is being sequenced by an international consortium of 10 countries (Korea, China, the United Kingdom, India, The Netherlands, France, Japan, Spain, Italy and the United States) as part of a larger initiative called...

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Mueller LA, Tanksley SD, Giovannoni JJ, et al. The Tomato Sequencing Project, the first cornerstone of the International Solanaceae Project (SOL). Comp Funct Genomics. 2005;6(3):153-8doi: 10.1002/cfg.468.
Mueller, L. A., Tanksley, S. D., Giovannoni, J. J., van Eck, J., Stack, S., Choi, D., Kim, B. D., Chen, M., Cheng, Z., Li, C., Ling, H., Xue, Y., Seymour, G., Bishop, G., Bryan, G., Sharma, R., Khurana, J., Tyagi, A., Chattopadhyay, D., Singh, N. K., Stiekema, W., Lindhout, P., Jesse, T., Lankhorst, R. K., Bouzayen, M., Shibata, D., Tabata, S., Granell, A., Botella, M. A., Giuliano, G., Frusciante, L., Causse, M., & Zamir, D. (2005). The Tomato Sequencing Project, the first cornerstone of the International Solanaceae Project (SOL). Comparative and functional genomics, 6(3), 153-8. https://doi.org/10.1002/cfg.468
Mueller, Lukas A, et al. "The Tomato Sequencing Project, the first cornerstone of the International Solanaceae Project (SOL)." Comparative and functional genomics vol. 6,3 (2005): 153-8. doi: https://doi.org/10.1002/cfg.468
Mueller LA, Tanksley SD, Giovannoni JJ, van Eck J, Stack S, Choi D, Kim BD, Chen M, Cheng Z, Li C, Ling H, Xue Y, Seymour G, Bishop G, Bryan G, Sharma R, Khurana J, Tyagi A, Chattopadhyay D, Singh NK, Stiekema W, Lindhout P, Jesse T, Lankhorst RK, Bouzayen M, Shibata D, Tabata S, Granell A, Botella MA, Giuliano G, Frusciante L, Causse M, Zamir D. The Tomato Sequencing Project, the first cornerstone of the International Solanaceae Project (SOL). Comp Funct Genomics. 2005;6(3):153-8. doi: 10.1002/cfg.468. PMID: 18629226; PMCID: PMC2447522.
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Molecular cloning and analysis of four potato tuber mRNAs.

Plant molecular biology

Stiekema WJ, Heidekamp F, Dirkse WG, van Beckum J, de Haan P, Bosch CT, Louwerse JD.
PMID: 24272339
Plant Mol Biol. 1988 May;11(3):255-69. doi: 10.1007/BF00027383.

Tuberization in potato is a complex developmental process involving the expression of a specific set of genes leading to the synthesis of tuber proteins. We here report the cloning and analysis of mRNAs encoding tuber proteins. From a potato...

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Stiekema WJ, Heidekamp F, Dirkse WG, et al. Molecular cloning and analysis of four potato tuber mRNAs. Plant Mol Biol. 1988;11(3):255-69doi: 10.1007/BF00027383.
Stiekema, W. J., Heidekamp, F., Dirkse, W. G., van Beckum, J., de Haan, P., Bosch, C. T., & Louwerse, J. D. (1988). Molecular cloning and analysis of four potato tuber mRNAs. Plant molecular biology, 11(3), 255-69. https://doi.org/10.1007/BF00027383
Stiekema, W J, et al. "Molecular cloning and analysis of four potato tuber mRNAs." Plant molecular biology vol. 11,3 (1988): 255-69. doi: https://doi.org/10.1007/BF00027383
Stiekema WJ, Heidekamp F, Dirkse WG, van Beckum J, de Haan P, Bosch CT, Louwerse JD. Molecular cloning and analysis of four potato tuber mRNAs. Plant Mol Biol. 1988 May;11(3):255-69. doi: 10.1007/BF00027383. PMID: 24272339.
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Reduced Position Effect in Mature Transgenic Plants Conferred by the Chicken Lysozyme Matrix-Associated Region.

The Plant cell

Mlynarova L, Loonen A, Heldens J, Jansen RC, Keizer P, Stiekema WJ, Nap JP.
PMID: 12244242
Plant Cell. 1994 Mar;6(3):417-426. doi: 10.1105/tpc.6.3.417.

Matrix-associated regions may be useful for studying the role of chromatin architecture in transgene activity of transformed plants. The chicken lysozyme A element was shown to have specific affinity for tobacco nuclear matrices, and its influence on the variability...

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Mlynarova L, Loonen A, Heldens J, et al. Reduced Position Effect in Mature Transgenic Plants Conferred by the Chicken Lysozyme Matrix-Associated Region. Plant Cell. 1994;6(3):417-426doi: 10.1105/tpc.6.3.417.
Mlynarova, L., Loonen, A., Heldens, J., Jansen, R. C., Keizer, P., Stiekema, W. J., & Nap, J. P. (1994). Reduced Position Effect in Mature Transgenic Plants Conferred by the Chicken Lysozyme Matrix-Associated Region. The Plant cell, 6(3), 417-426. https://doi.org/10.1105/tpc.6.3.417
Mlynarova, L., et al. "Reduced Position Effect in Mature Transgenic Plants Conferred by the Chicken Lysozyme Matrix-Associated Region." The Plant cell vol. 6,3 (1994): 417-426. doi: https://doi.org/10.1105/tpc.6.3.417
Mlynarova L, Loonen A, Heldens J, Jansen RC, Keizer P, Stiekema WJ, Nap JP. Reduced Position Effect in Mature Transgenic Plants Conferred by the Chicken Lysozyme Matrix-Associated Region. Plant Cell. 1994 Mar;6(3):417-426. doi: 10.1105/tpc.6.3.417. PMID: 12244242; PMCID: PMC160444.
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Mapping of QTLs involved in nematode resistance, tuber yield and root development in Solanum sp.

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik

Kreike CM, Kok-Westeneng AA, Vinke JH, Stiekema WJ.
PMID: 24166272
Theor Appl Genet. 1996 Mar;92(3):463-70. doi: 10.1007/BF00223694.

A backcross population, derived from the cross (S. tuberosumxS. spegazzinii)xS. tuberosum was used to map QTLs involved in nematode resistance, tuber yield and root development. Complete linkage maps were available for the interspecific hybrid parent as well as the...

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Kreike CM, Kok-Westeneng AA, Vinke JH, et al. Mapping of QTLs involved in nematode resistance, tuber yield and root development in Solanum sp. Theor Appl Genet. 1996;92(3):463-70doi: 10.1007/BF00223694.
Kreike, C. M., Kok-Westeneng, A. A., Vinke, J. H., & Stiekema, W. J. (1996). Mapping of QTLs involved in nematode resistance, tuber yield and root development in Solanum sp. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 92(3), 463-70. https://doi.org/10.1007/BF00223694
Kreike, C M, et al. "Mapping of QTLs involved in nematode resistance, tuber yield and root development in Solanum sp." TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik vol. 92,3 (1996): 463-70. doi: https://doi.org/10.1007/BF00223694
Kreike CM, Kok-Westeneng AA, Vinke JH, Stiekema WJ. Mapping of QTLs involved in nematode resistance, tuber yield and root development in Solanum sp. Theor Appl Genet. 1996 Mar;92(3):463-70. doi: 10.1007/BF00223694. PMID: 24166272.
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