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Draft Genome Sequences of Achromobacter piechaudii GCS2, Agrobacterium sp. Strain SUL3, Microbacterium sp. Strain GCS4, Shinella sp. Strain GWS1, and Shinella sp. Strain SUS2 Isolated from Consortium with the Hydrocarbon-Producing Alga Botryococcus braunii.

Genome announcements

Jones KJ, Moore K, Sambles C, Love J, Studholme DJ, Aves SJ.
PMID: 26769927
Genome Announc. 2016 Jan 14;4(1). doi: 10.1128/genomeA.01527-15.

A variety of bacteria associate with the hydrocarbon-producing microalga Botryococcus braunii, some of which may influence its growth. We report here the genome sequences for Achromobacter piechaudii GCS2, Agrobacterium sp. strain SUL3, Microbacterium sp. strain GCS4, and Shinella sp....

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Jones KJ, Moore K, Sambles C, et al. Draft Genome Sequences of Achromobacter piechaudii GCS2, Agrobacterium sp. Strain SUL3, Microbacterium sp. Strain GCS4, Shinella sp. Strain GWS1, and Shinella sp. Strain SUS2 Isolated from Consortium with the Hydrocarbon-Producing Alga Botryococcus braunii. Genome Announc. 2016;4(1)doi: 10.1128/genomeA.01527-15.
Jones, K. J., Moore, K., Sambles, C., Love, J., Studholme, D. J., & Aves, S. J. (2016). Draft Genome Sequences of Achromobacter piechaudii GCS2, Agrobacterium sp. Strain SUL3, Microbacterium sp. Strain GCS4, Shinella sp. Strain GWS1, and Shinella sp. Strain SUS2 Isolated from Consortium with the Hydrocarbon-Producing Alga Botryococcus braunii. Genome announcements, 4(1), . https://doi.org/10.1128/genomeA.01527-15
Jones, Katy J, et al. "Draft Genome Sequences of Achromobacter piechaudii GCS2, Agrobacterium sp. Strain SUL3, Microbacterium sp. Strain GCS4, Shinella sp. Strain GWS1, and Shinella sp. Strain SUS2 Isolated from Consortium with the Hydrocarbon-Producing Alga Botryococcus braunii." Genome announcements vol. 4,1 (2016). doi: https://doi.org/10.1128/genomeA.01527-15
Jones KJ, Moore K, Sambles C, Love J, Studholme DJ, Aves SJ. Draft Genome Sequences of Achromobacter piechaudii GCS2, Agrobacterium sp. Strain SUL3, Microbacterium sp. Strain GCS4, Shinella sp. Strain GWS1, and Shinella sp. Strain SUS2 Isolated from Consortium with the Hydrocarbon-Producing Alga Botryococcus braunii. Genome Announc. 2016 Jan 14;4(1). doi: 10.1128/genomeA.01527-15. PMID: 26769927; PMCID: PMC4714109.
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A Suppressor/Avirulence Gene Combination in .

Frontiers in plant science

Woods-Tör A, Studholme DJ, Cevik V, Telli O, Holub EB, Tör M.
PMID: 29545818
Front Plant Sci. 2018 Mar 01;9:265. doi: 10.3389/fpls.2018.00265. eCollection 2018.

The pathosystem of

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Woods-Tör A, Studholme DJ, Cevik V, et al. A Suppressor/Avirulence Gene Combination in . Front Plant Sci. 2018;9:265doi: 10.3389/fpls.2018.00265.
Woods-Tör, A., Studholme, D. J., Cevik, V., Telli, O., Holub, E. B., & Tör, M. (2018). A Suppressor/Avirulence Gene Combination in . Frontiers in plant science, 9265. https://doi.org/10.3389/fpls.2018.00265
Woods-Tör, Alison, et al. "A Suppressor/Avirulence Gene Combination in ." Frontiers in plant science vol. 9 (2018): 265. doi: https://doi.org/10.3389/fpls.2018.00265
Woods-Tör A, Studholme DJ, Cevik V, Telli O, Holub EB, Tör M. A Suppressor/Avirulence Gene Combination in . Front Plant Sci. 2018 Mar 01;9:265. doi: 10.3389/fpls.2018.00265. eCollection 2018. PMID: 29545818; PMCID: PMC5838922.
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Draft Genome Sequence of Beneficial Rice Rhizosphere Isolate Pseudomonas aeruginosa PUPa3.

Genome announcements

Uzelac G, Bertani I, Kojic M, Paszkiewicz KH, Studholme DJ, Passos da Silva D, Venturi V.
PMID: 24994800
Genome Announc. 2014 Jul 03;2(4). doi: 10.1128/genomeA.00654-14.

Pseudomonas aeruginosa PUPa3 is a rhizosphere-colonizing and plant growth-promoting strain isolated from the rhizosphere of rice. This strain has, however, been shown to be pathogenic in two nonmammalian infection models. Here we report the draft genome sequence of P....

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Uzelac G, Bertani I, Kojic M, et al. Draft Genome Sequence of Beneficial Rice Rhizosphere Isolate Pseudomonas aeruginosa PUPa3. Genome Announc. 2014;2(4)doi: 10.1128/genomeA.00654-14.
Uzelac, G., Bertani, I., Kojic, M., Paszkiewicz, K. H., Studholme, D. J., Passos da Silva, D., & Venturi, V. (2014). Draft Genome Sequence of Beneficial Rice Rhizosphere Isolate Pseudomonas aeruginosa PUPa3. Genome announcements, 2(4), . https://doi.org/10.1128/genomeA.00654-14
Uzelac, Gordana, et al. "Draft Genome Sequence of Beneficial Rice Rhizosphere Isolate Pseudomonas aeruginosa PUPa3." Genome announcements vol. 2,4 (2014). doi: https://doi.org/10.1128/genomeA.00654-14
Uzelac G, Bertani I, Kojic M, Paszkiewicz KH, Studholme DJ, Passos da Silva D, Venturi V. Draft Genome Sequence of Beneficial Rice Rhizosphere Isolate Pseudomonas aeruginosa PUPa3. Genome Announc. 2014 Jul 03;2(4). doi: 10.1128/genomeA.00654-14. PMID: 24994800; PMCID: PMC4082000.
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Correction: Studholme et al., Draft Genome Sequences of Xanthomonas sacchari and Two Banana-Associated Xanthomonads Reveal Insights into the Xanthomonas Group 1 clade. Genes 2011, 2, 1050-1065.

Genes

Studholme DJ, Wasukira A, Paszkiewicz K, Aritua V, Thwaites R, Smith J, Grant M.
PMID: 26791659
Genes (Basel). 2012 Jan 11;3(1):88-9. doi: 10.3390/genes3010088.

Following publication of our article [1], we found errors in analyses performed by the corresponding author (DJS) related to the phylogenetic relationship between Xylella species and the other xanthomonads. These errors do not make any difference to the main...

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Studholme DJ, Wasukira A, Paszkiewicz K, et al. Correction: Studholme et al., Draft Genome Sequences of Xanthomonas sacchari and Two Banana-Associated Xanthomonads Reveal Insights into the Xanthomonas Group 1 clade. Genes 2011, 2, 1050-1065. Genes (Basel). 2012;3(1):88-9doi: 10.3390/genes3010088.
Studholme, D. J., Wasukira, A., Paszkiewicz, K., Aritua, V., Thwaites, R., Smith, J., & Grant, M. (2012). Correction: Studholme et al., Draft Genome Sequences of Xanthomonas sacchari and Two Banana-Associated Xanthomonads Reveal Insights into the Xanthomonas Group 1 clade. Genes 2011, 2, 1050-1065. Genes, 3(1), 88-9. https://doi.org/10.3390/genes3010088
Studholme, David J, et al. "Correction: Studholme et al., Draft Genome Sequences of Xanthomonas sacchari and Two Banana-Associated Xanthomonads Reveal Insights into the Xanthomonas Group 1 clade. Genes 2011, 2, 1050-1065." Genes vol. 3,1 (2012): 88-9. doi: https://doi.org/10.3390/genes3010088
Studholme DJ, Wasukira A, Paszkiewicz K, Aritua V, Thwaites R, Smith J, Grant M. Correction: Studholme et al., Draft Genome Sequences of Xanthomonas sacchari and Two Banana-Associated Xanthomonads Reveal Insights into the Xanthomonas Group 1 clade. Genes 2011, 2, 1050-1065. Genes (Basel). 2012 Jan 11;3(1):88-9. doi: 10.3390/genes3010088. PMID: 26791659; PMCID: PMC3902796.
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Draft Genome Sequence of Erwinia toletana, a Bacterium Associated with Olive Knots Caused by Pseudomonas savastanoi pv. Savastanoi.

Genome announcements

Passos da Silva D, Devescovi G, Paszkiewicz K, Moretti C, Buonaurio R, Studholme DJ, Venturi V.
PMID: 23661482
Genome Announc. 2013 May 09;1(3). doi: 10.1128/genomeA.00205-13.

Erwinia toletana was first reported in 2004 as a bacterial species isolated from olive knots caused by the plant bacterium Pseudomonas savastanoi pv. savastanoi. Recent studies have shown that the presence of this bacterium in the olive knot environment...

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Passos da Silva D, Devescovi G, Paszkiewicz K, et al. Draft Genome Sequence of Erwinia toletana, a Bacterium Associated with Olive Knots Caused by Pseudomonas savastanoi pv. Savastanoi. Genome Announc. 2013;1(3)doi: 10.1128/genomeA.00205-13.
Passos da Silva, D., Devescovi, G., Paszkiewicz, K., Moretti, C., Buonaurio, R., Studholme, D. J., & Venturi, V. (2013). Draft Genome Sequence of Erwinia toletana, a Bacterium Associated with Olive Knots Caused by Pseudomonas savastanoi pv. Savastanoi. Genome announcements, 1(3), . https://doi.org/10.1128/genomeA.00205-13
Passos da Silva, Daniel, et al. "Draft Genome Sequence of Erwinia toletana, a Bacterium Associated with Olive Knots Caused by Pseudomonas savastanoi pv. Savastanoi." Genome announcements vol. 1,3 (2013). doi: https://doi.org/10.1128/genomeA.00205-13
Passos da Silva D, Devescovi G, Paszkiewicz K, Moretti C, Buonaurio R, Studholme DJ, Venturi V. Draft Genome Sequence of Erwinia toletana, a Bacterium Associated with Olive Knots Caused by Pseudomonas savastanoi pv. Savastanoi. Genome Announc. 2013 May 09;1(3). doi: 10.1128/genomeA.00205-13. PMID: 23661482; PMCID: PMC3650441.
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Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles.

Genome research

Nandi T, Holden MT, Didelot X, Mehershahi K, Boddey JA, Beacham I, Peak I, Harting J, Baybayan P, Guo Y, Wang S, How LC, Sim B, Essex-Lopresti A, Sarkar-Tyson M, Nelson M, Smither S, Ong C, Aw LT, Hoon CH, Michell S, Studholme DJ, Titball R, Chen SL, Parkhill J, Tan P.
PMID: 25834186
Genome Res. 2015 Apr;25(4):608.

No abstract available.

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Nandi T, Holden MT, Didelot X, et al. Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles. Genome Res. 2015;25(4):608
Nandi, T., Holden, M. T., Didelot, X., Mehershahi, K., Boddey, J. A., Beacham, I., Peak, I., Harting, J., Baybayan, P., Guo, Y., Wang, S., How, L. C., Sim, B., Essex-Lopresti, A., Sarkar-Tyson, M., Nelson, M., Smither, S., Ong, C., Aw, L. T., Hoon, C. H., Michell, S., Studholme, D. J., Titball, R., Chen, S. L., Parkhill, J., & Tan, P. (2015). Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles. Genome research, 25(4), 608.
Nandi, Tannistha, et al. "Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles." Genome research vol. 25,4 (2015): 608.
Nandi T, Holden MT, Didelot X, Mehershahi K, Boddey JA, Beacham I, Peak I, Harting J, Baybayan P, Guo Y, Wang S, How LC, Sim B, Essex-Lopresti A, Sarkar-Tyson M, Nelson M, Smither S, Ong C, Aw LT, Hoon CH, Michell S, Studholme DJ, Titball R, Chen SL, Parkhill J, Tan P. Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles. Genome Res. 2015 Apr;25(4):608. PMID: 25834186; PMCID: PMC4381531.
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Coping with Environmental Eukaryotes; Identification of .

Microorganisms

Dorati F, Barrett GA, Sanchez-Contreras M, Arseneault T, José MS, Studholme DJ, Murillo J, Caballero P, Waterfield NR, Arnold DL, Shaw LJ, Jackson RW.
PMID: 29690522
Microorganisms. 2018 Apr 21;6(2). doi: 10.3390/microorganisms6020032.

Understanding the molecular mechanisms underpinning the ecological success of plant pathogens is critical to develop strategies for controlling diseases and protecting crops. Recent observations have shown that plant pathogenic bacteria, particularly

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Dorati F, Barrett GA, Sanchez-Contreras M, et al. Coping with Environmental Eukaryotes; Identification of . Microorganisms. 2018;6(2)doi: 10.3390/microorganisms6020032.
Dorati, F., Barrett, G. A., Sanchez-Contreras, M., Arseneault, T., José, M. S., Studholme, D. J., Murillo, J., Caballero, P., Waterfield, N. R., Arnold, D. L., Shaw, L. J., & Jackson, R. W. (2018). Coping with Environmental Eukaryotes; Identification of . Microorganisms, 6(2), . https://doi.org/10.3390/microorganisms6020032
Dorati, Federico, et al. "Coping with Environmental Eukaryotes; Identification of ." Microorganisms vol. 6,2 (2018). doi: https://doi.org/10.3390/microorganisms6020032
Dorati F, Barrett GA, Sanchez-Contreras M, Arseneault T, José MS, Studholme DJ, Murillo J, Caballero P, Waterfield NR, Arnold DL, Shaw LJ, Jackson RW. Coping with Environmental Eukaryotes; Identification of . Microorganisms. 2018 Apr 21;6(2). doi: 10.3390/microorganisms6020032. PMID: 29690522; PMCID: PMC6027264.
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Draft Genome Sequences of Pathotype Strains for Three Pathovars Belonging to Three Xanthomonas Species.

Microbiology resource announcements

Michalopoulou VA, Vicente JG, Studholme DJ, Sarris PF.
PMID: 30533651
Microbiol Resour Announc. 2018 Sep 27;7(12). doi: 10.1128/MRA.00923-18. eCollection 2018 Sep.

We present here the draft genome sequences of type/pathotype strains for three Xanthomonas species and pathovars with different host specificities, the Hedera helix L. pathogen Xanthomonas hortorum pv. hederae WHRI 7744 (NCPPB 939T), the rice pathogen X. oryzae pv....

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Michalopoulou VA, Vicente JG, Studholme DJ, et al. Draft Genome Sequences of Pathotype Strains for Three Pathovars Belonging to Three Xanthomonas Species. Microbiol Resour Announc. 2018;7(12)doi: 10.1128/MRA.00923-18.
Michalopoulou, V. A., Vicente, J. G., Studholme, D. J., & Sarris, P. F. (2018). Draft Genome Sequences of Pathotype Strains for Three Pathovars Belonging to Three Xanthomonas Species. Microbiology resource announcements, 7(12), . https://doi.org/10.1128/MRA.00923-18
Michalopoulou, Vassiliki A, et al. "Draft Genome Sequences of Pathotype Strains for Three Pathovars Belonging to Three Xanthomonas Species." Microbiology resource announcements vol. 7,12 (2018). doi: https://doi.org/10.1128/MRA.00923-18
Michalopoulou VA, Vicente JG, Studholme DJ, Sarris PF. Draft Genome Sequences of Pathotype Strains for Three Pathovars Belonging to Three Xanthomonas Species. Microbiol Resour Announc. 2018 Sep 27;7(12). doi: 10.1128/MRA.00923-18. eCollection 2018 Sep. PMID: 30533651; PMCID: PMC6256674.
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A highly specific tool for identification of .

Heliyon

Nakato GV, Wicker E, Coutinho TA, Mahuku G, Studholme DJ.
PMID: 30603713
Heliyon. 2018 Dec 27;4(12):e01080. doi: 10.1016/j.heliyon.2018.e01080. eCollection 2018 Dec.

No abstract available.

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Nakato GV, Wicker E, Coutinho TA, et al. A highly specific tool for identification of . Heliyon. 2018;4(12):e01080doi: 10.1016/j.heliyon.2018.e01080.
Nakato, G. V., Wicker, E., Coutinho, T. A., Mahuku, G., & Studholme, D. J. (2018). A highly specific tool for identification of . Heliyon, 4(12), e01080. https://doi.org/10.1016/j.heliyon.2018.e01080
Nakato, Gloria Valentine, et al. "A highly specific tool for identification of ." Heliyon vol. 4,12 (2018): e01080. doi: https://doi.org/10.1016/j.heliyon.2018.e01080
Nakato GV, Wicker E, Coutinho TA, Mahuku G, Studholme DJ. A highly specific tool for identification of . Heliyon. 2018 Dec 27;4(12):e01080. doi: 10.1016/j.heliyon.2018.e01080. eCollection 2018 Dec. PMID: 30603713; PMCID: PMC6307341.
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A first WHO reference reagent for the detection of anti-human platelet antigen-15b.

Vox sanguinis

Sharp G, Poles A, Studholme L.
PMID: 34164825
Vox Sang. 2021 Jun 23; doi: 10.1111/vox.13167. Epub 2021 Jun 23.

BACKGROUND AND OBJECTIVES: Alloantibodies to human platelet antigen-15b (anti-HPA-15b) have been detected in mothers with foetal-neonatal alloimmune thrombocytopenia and in multiply transfused patients. Assays used to detect this antibody, which aids in disease diagnosis, can be unreliable and vary...

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Sharp G, Poles A, Studholme L. A first WHO reference reagent for the detection of anti-human platelet antigen-15b. Vox Sang. 2021;doi: 10.1111/vox.13167.
Sharp, G., Poles, A., & Studholme, L. (2021). A first WHO reference reagent for the detection of anti-human platelet antigen-15b. Vox sanguinis, . https://doi.org/10.1111/vox.13167
Sharp, Giles, et al. "A first WHO reference reagent for the detection of anti-human platelet antigen-15b." Vox sanguinis vol. (2021). doi: https://doi.org/10.1111/vox.13167
Sharp G, Poles A, Studholme L. A first WHO reference reagent for the detection of anti-human platelet antigen-15b. Vox Sang. 2021 Jun 23; doi: 10.1111/vox.13167. Epub 2021 Jun 23. PMID: 34164825.
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Endophytic Bacterial Isolates From Halophytes Demonstrate Phytopathogen Biocontrol and Plant Growth Promotion Under High Salinity.

Frontiers in microbiology

Christakis CA, Daskalogiannis G, Chatzaki A, Markakis EA, Mermigka G, Sagia A, Rizzo GF, Catara V, Lagkouvardos I, Studholme DJ, Sarris PF.
PMID: 34017321
Front Microbiol. 2021 May 04;12:681567. doi: 10.3389/fmicb.2021.681567. eCollection 2021.

Halophytic endophytes potentially contribute to the host's adaptation to adverse environments, improving its tolerance against various biotic and abiotic stresses. Here, we identified the culturable endophytic bacteria of three crop wild relative (CWR) halophytes:

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Christakis CA, Daskalogiannis G, Chatzaki A, et al. Endophytic Bacterial Isolates From Halophytes Demonstrate Phytopathogen Biocontrol and Plant Growth Promotion Under High Salinity. Front Microbiol. 2021;12:681567doi: 10.3389/fmicb.2021.681567.
Christakis, C. A., Daskalogiannis, G., Chatzaki, A., Markakis, E. A., Mermigka, G., Sagia, A., Rizzo, G. F., Catara, V., Lagkouvardos, I., Studholme, D. J., & Sarris, P. F. (2021). Endophytic Bacterial Isolates From Halophytes Demonstrate Phytopathogen Biocontrol and Plant Growth Promotion Under High Salinity. Frontiers in microbiology, 12681567. https://doi.org/10.3389/fmicb.2021.681567
Christakis, Christos A, et al. "Endophytic Bacterial Isolates From Halophytes Demonstrate Phytopathogen Biocontrol and Plant Growth Promotion Under High Salinity." Frontiers in microbiology vol. 12 (2021): 681567. doi: https://doi.org/10.3389/fmicb.2021.681567
Christakis CA, Daskalogiannis G, Chatzaki A, Markakis EA, Mermigka G, Sagia A, Rizzo GF, Catara V, Lagkouvardos I, Studholme DJ, Sarris PF. Endophytic Bacterial Isolates From Halophytes Demonstrate Phytopathogen Biocontrol and Plant Growth Promotion Under High Salinity. Front Microbiol. 2021 May 04;12:681567. doi: 10.3389/fmicb.2021.681567. eCollection 2021. PMID: 34017321; PMCID: PMC8129196.
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Development of a lateral flow device for in-field detection and evaluation of PCR-based diagnostic methods for .

Plant pathology

Hodgetts J, Karamura G, Johnson G, Hall J, Perkins K, Beed F, Nakato V, Grant M, Studholme DJ, Boonham N, Smith J.
PMID: 32313307
Plant Pathol. 2015 Jun;64(3):559-567. doi: 10.1111/ppa.12289. Epub 2014 Oct 02.

No abstract available.

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Hodgetts J, Karamura G, Johnson G, et al. Development of a lateral flow device for in-field detection and evaluation of PCR-based diagnostic methods for . Plant Pathol. 2014;64(3):559-567doi: 10.1111/ppa.12289.
Hodgetts, J., Karamura, G., Johnson, G., Hall, J., Perkins, K., Beed, F., Nakato, V., Grant, M., Studholme, D. J., Boonham, N., & Smith, J. (2015). Development of a lateral flow device for in-field detection and evaluation of PCR-based diagnostic methods for . Plant pathology, 64(3), 559-567. https://doi.org/10.1111/ppa.12289
Hodgetts, J, et al. "Development of a lateral flow device for in-field detection and evaluation of PCR-based diagnostic methods for ." Plant pathology vol. 64,3 (2015): 559-567. doi: https://doi.org/10.1111/ppa.12289
Hodgetts J, Karamura G, Johnson G, Hall J, Perkins K, Beed F, Nakato V, Grant M, Studholme DJ, Boonham N, Smith J. Development of a lateral flow device for in-field detection and evaluation of PCR-based diagnostic methods for . Plant Pathol. 2015 Jun;64(3):559-567. doi: 10.1111/ppa.12289. Epub 2014 Oct 02. PMID: 32313307; PMCID: PMC7159137.
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