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Targeted alignment and end repair elimination increase alignment and methylation measure accuracy for reduced representation bisulfite sequencing data

pipeline programs

Baheti S, Kanwar R.
GSID: NfVSroXD87IJ
S Baheti, R Kanwar… - BMC …, 2016 - bmcgenomics.biomedcentral.com

DNA methylation is an important epigenetic modification involved in many biological processes. Reduced representation bisulfite sequencing (RRBS) is a cost-effective method …

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Baheti, S., Kanwar, R., Goelzenleuchter, M., Kocher, J. P. A., Beutler, A. S., & Sun, Z. (2016). Targeted alignment and end repair elimination increase alignment and methylation measure accuracy for reduced representation bisulfite sequencing data. BMC genomics, 17(1), 1-8.
Baheti, Saurabh, et al. "Targeted alignment and end repair elimination increase alignment and methylation measure accuracy for reduced representation bisulfite sequencing data." BMC genomics 17.1 (2016): 1-8.
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Histopathological differences utilizing the nonalcoholic fatty liver disease activity score criteria in diabetic (type 2 diabetes mellitus) and non-diabetic patients with nonalcoholic fatty liver disease.

World journal of hepatology

Puchakayala BK, Verma S, Kanwar P, Hart J, Sanivarapu RR, Mohanty SR.
PMID: 26557954
World J Hepatol. 2015 Nov 08;7(25):2610-8. doi: 10.4254/wjh.v7.i25.2610.

AIM: To study clinical and histopathological features of nonalcoholic fatty liver disease (NAFLD) in patients with and without type 2 diabetes mellitus (T2DM) using updated nonalcoholic steatohepatitis clinical research network (NASH-CRN) grading system.METHODS: We retrospectively analyzed data of 235...

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Puchakayala BK, Verma S, Kanwar P, et al. Histopathological differences utilizing the nonalcoholic fatty liver disease activity score criteria in diabetic (type 2 diabetes mellitus) and non-diabetic patients with nonalcoholic fatty liver disease. World J Hepatol. 2015;7(25):2610-8doi: 10.4254/wjh.v7.i25.2610.
Puchakayala, B. K., Verma, S., Kanwar, P., Hart, J., Sanivarapu, R. R., & Mohanty, S. R. (2015). Histopathological differences utilizing the nonalcoholic fatty liver disease activity score criteria in diabetic (type 2 diabetes mellitus) and non-diabetic patients with nonalcoholic fatty liver disease. World journal of hepatology, 7(25), 2610-8. https://doi.org/10.4254/wjh.v7.i25.2610
Puchakayala, Bharat K, et al. "Histopathological differences utilizing the nonalcoholic fatty liver disease activity score criteria in diabetic (type 2 diabetes mellitus) and non-diabetic patients with nonalcoholic fatty liver disease." World journal of hepatology vol. 7,25 (2015): 2610-8. doi: https://doi.org/10.4254/wjh.v7.i25.2610
Puchakayala BK, Verma S, Kanwar P, Hart J, Sanivarapu RR, Mohanty SR. Histopathological differences utilizing the nonalcoholic fatty liver disease activity score criteria in diabetic (type 2 diabetes mellitus) and non-diabetic patients with nonalcoholic fatty liver disease. World J Hepatol. 2015 Nov 08;7(25):2610-8. doi: 10.4254/wjh.v7.i25.2610. PMID: 26557954; PMCID: PMC4635147.
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Grain iron and zinc density in pearl millet: combining ability, heterosis and association with grain yield and grain size.

SpringerPlus

Kanatti A, Rai KN, Radhika K, Govindaraj M, Sahrawat KL, Rao AS.
PMID: 25674488
Springerplus. 2014 Dec 26;3:763. doi: 10.1186/2193-1801-3-763. eCollection 2014.

Genetics of micronutrients and their relationships with grain yield and other traits have a direct bearing on devising effective strategies for breeding biofortified crop cultivars. A line × tester study of 196 hybrids and their 28 parental lines of...

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Kanatti A, Rai KN, Radhika K, et al. Grain iron and zinc density in pearl millet: combining ability, heterosis and association with grain yield and grain size. Springerplus. 2014;3:763doi: 10.1186/2193-1801-3-763.
Kanatti, A., Rai, K. N., Radhika, K., Govindaraj, M., Sahrawat, K. L., & Rao, A. S. (2014). Grain iron and zinc density in pearl millet: combining ability, heterosis and association with grain yield and grain size. SpringerPlus, 3763. https://doi.org/10.1186/2193-1801-3-763
Kanatti, Anand, et al. "Grain iron and zinc density in pearl millet: combining ability, heterosis and association with grain yield and grain size." SpringerPlus vol. 3 (2014): 763. doi: https://doi.org/10.1186/2193-1801-3-763
Kanatti A, Rai KN, Radhika K, Govindaraj M, Sahrawat KL, Rao AS. Grain iron and zinc density in pearl millet: combining ability, heterosis and association with grain yield and grain size. Springerplus. 2014 Dec 26;3:763. doi: 10.1186/2193-1801-3-763. eCollection 2014. PMID: 25674488; PMCID: PMC4320223.
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Gastric outlet obstruction caused by a pyloric submucosal fibroepithelial tumour.

Journal of surgical case reports

McCombie J, Shahzad K, Pinto J, Kanwar S.
PMID: 24950510
J Surg Case Rep. 2011 Sep 01;2011(9):9. doi: 10.1093/jscr/2011.9.9.

A 57 year old male patient presented to our hospital with vomiting, epigastric discomfort, and loss of appetite over a 24hr period. Subsequent investigations demonstrated a submucosal lesion causing gastric outlet obstruction. The patients deteriorating condition mandated laparotomy and...

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McCombie J, Shahzad K, Pinto J, et al. Gastric outlet obstruction caused by a pyloric submucosal fibroepithelial tumour. J Surg Case Rep. 2011;2011(9):9doi: 10.1093/jscr/2011.9.9.
McCombie, J., Shahzad, K., Pinto, J., & Kanwar, S. (2011). Gastric outlet obstruction caused by a pyloric submucosal fibroepithelial tumour. Journal of surgical case reports, 2011(9), 9. https://doi.org/10.1093/jscr/2011.9.9
McCombie, Jj, et al. "Gastric outlet obstruction caused by a pyloric submucosal fibroepithelial tumour." Journal of surgical case reports vol. 2011,9 (2011): 9. doi: https://doi.org/10.1093/jscr/2011.9.9
McCombie J, Shahzad K, Pinto J, Kanwar S. Gastric outlet obstruction caused by a pyloric submucosal fibroepithelial tumour. J Surg Case Rep. 2011 Sep 01;2011(9):9. doi: 10.1093/jscr/2011.9.9. PMID: 24950510; PMCID: PMC3649299.
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Amoebic colitis presenting as ileocaecal intussusception - a rare case.

The Malaysian journal of medical sciences : MJMS

Tanwar R, Jain SK, Bains L.
PMID: 24876810
Malays J Med Sci. 2014 Mar;21(2):68-70.

Ileocaecal intussusception is a common cause of acute intestinal obstruction presenting as a surgical emergency. We report a case of amoebic colitis in a 62 years old man complaining of acute colicky pain in the right iliac fossa, associated...

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Tanwar R, Jain SK, Bains L. Amoebic colitis presenting as ileocaecal intussusception - a rare case. Malays J Med Sci. 2014;21(2):68-70
Tanwar, R., Jain, S. K., & Bains, L. (2014). Amoebic colitis presenting as ileocaecal intussusception - a rare case. The Malaysian journal of medical sciences : MJMS, 21(2), 68-70.
Tanwar, Raman, et al. "Amoebic colitis presenting as ileocaecal intussusception - a rare case." The Malaysian journal of medical sciences : MJMS vol. 21,2 (2014): 68-70.
Tanwar R, Jain SK, Bains L. Amoebic colitis presenting as ileocaecal intussusception - a rare case. Malays J Med Sci. 2014 Mar;21(2):68-70. PMID: 24876810; PMCID: PMC4028574.
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Evaluation of Cardiopulmonary Resuscitation (CPR) for Patient Outcomes and their Predictors.

Journal of clinical and diagnostic research : JCDR

Singh S, Namrata, Grewal A, Gautam PL, Luthra N, Tanwar G, Kaur A.
PMID: 26894150
J Clin Diagn Res. 2016 Jan;10(1):UC01-4. doi: 10.7860/JCDR/2016/14773.7012. Epub 2016 Jan 01.

INTRODUCTION: Cardiac arrest continues to be a common cause of in-hospital deaths. Even small improvements in survival can translate into thousands of lives saved every year.AIM: The aim of our prospective observational study was to elicit the outcomes and...

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Singh S, Namrata, Grewal A, et al. Evaluation of Cardiopulmonary Resuscitation (CPR) for Patient Outcomes and their Predictors. J Clin Diagn Res. 2016;10(1):UC01-4doi: 10.7860/JCDR/2016/14773.7012.
Singh, S., Namrata, Grewal, A., Gautam, P. L., Luthra, N., Tanwar, G., & Kaur, A. (2016). Evaluation of Cardiopulmonary Resuscitation (CPR) for Patient Outcomes and their Predictors. Journal of clinical and diagnostic research : JCDR, 10(1), UC01-4. https://doi.org/10.7860/JCDR/2016/14773.7012
Singh, Swati, et al. "Evaluation of Cardiopulmonary Resuscitation (CPR) for Patient Outcomes and their Predictors." Journal of clinical and diagnostic research : JCDR vol. 10,1 (2016): UC01-4. doi: https://doi.org/10.7860/JCDR/2016/14773.7012
Singh S, Namrata, Grewal A, Gautam PL, Luthra N, Tanwar G, Kaur A. Evaluation of Cardiopulmonary Resuscitation (CPR) for Patient Outcomes and their Predictors. J Clin Diagn Res. 2016 Jan;10(1):UC01-4. doi: 10.7860/JCDR/2016/14773.7012. Epub 2016 Jan 01. PMID: 26894150; PMCID: PMC4740678.
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Relationship between Factor V Leiden Gene Variant and Risk of Ischemic Stroke: A Case-Control Study.

Annals of Indian Academy of Neurology

Kumar A, Misra S, Sagar R, Kumar P, Yadav AK, Talwar P, Raj R, Prasad K.
PMID: 28904463
Ann Indian Acad Neurol. 2017 Jul-Sep;20(3):284-288. doi: 10.4103/aian.AIAN_31_17.

BACKGROUND: Factor V Leiden is the most common genetic variation among the blood coagulation pathway which leads to prothrombotic state, therefore, is considered an important gene for understating the stroke mechanism.AIM: The aim of the present study is to...

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Kumar A, Misra S, Sagar R, et al. Relationship between Factor V Leiden Gene Variant and Risk of Ischemic Stroke: A Case-Control Study. Ann Indian Acad Neurol. 2017;20(3):284-288doi: 10.4103/aian.AIAN_31_17.
Kumar, A., Misra, S., Sagar, R., Kumar, P., Yadav, A. K., Talwar, P., Raj, R., & Prasad, K. (2017). Relationship between Factor V Leiden Gene Variant and Risk of Ischemic Stroke: A Case-Control Study. Annals of Indian Academy of Neurology, 20(3), 284-288. https://doi.org/10.4103/aian.AIAN_31_17
Kumar, Amit, et al. "Relationship between Factor V Leiden Gene Variant and Risk of Ischemic Stroke: A Case-Control Study." Annals of Indian Academy of Neurology vol. 20,3 (2017): 284-288. doi: https://doi.org/10.4103/aian.AIAN_31_17
Kumar A, Misra S, Sagar R, Kumar P, Yadav AK, Talwar P, Raj R, Prasad K. Relationship between Factor V Leiden Gene Variant and Risk of Ischemic Stroke: A Case-Control Study. Ann Indian Acad Neurol. 2017 Jul-Sep;20(3):284-288. doi: 10.4103/aian.AIAN_31_17. PMID: 28904463; PMCID: PMC5586126.
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India's HIV programme: successes and challenges.

Journal of virus eradication

Tanwar S, Rewari BB, Rao CD, Seguy N.
PMID: 28275445
J Virus Erad. 2016 Nov 28;2:15-19.

Over the last two decades, India's National AIDS Control Programme (NACP) has evolved and expanded to provide HIV prevention, testing and treatment services countrywide. Scaling up has been uniform across all strategic components and has not only halted, but...

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Tanwar S, Rewari BB, Rao CD, et al. India's HIV programme: successes and challenges. J Virus Erad. 2016;2:15-19
Tanwar, S., Rewari, B. B., Rao, C. D., & Seguy, N. (2016). India's HIV programme: successes and challenges. Journal of virus eradication, 215-19.
Tanwar, Sukarma, et al. "India's HIV programme: successes and challenges." Journal of virus eradication vol. 2 (2016): 15-19.
Tanwar S, Rewari BB, Rao CD, Seguy N. India's HIV programme: successes and challenges. J Virus Erad. 2016 Nov 28;2:15-19. PMID: 28275445; PMCID: PMC5337408.
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Profile of Live-born Infants of In-vitro Fertilisation.

Medical journal, Armed Forces India

Narayan S, Rana KS, Sharma M, Sharma RK, Talwar P, Kapur K, Goyal BK.
PMID: 27365697
Med J Armed Forces India. 2010 Jan;66(1):18-21. doi: 10.1016/S0377-1237(10)80085-1. Epub 2011 Jul 21.

INTRODUCTION: The Army Hospital (R&R) is the only service hospital providing in-vitro fertilisation (IVF) facility. Neonatal characteristics of live-born infants at this centre over a two-year period are analyzed in this study.METHODS: Data on 504 consecutive live-born IVF infants...

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Narayan S, Rana KS, Sharma M, et al. Profile of Live-born Infants of In-vitro Fertilisation. Med J Armed Forces India. 2011;66(1):18-21doi: 10.1016/S0377-1237(10)80085-1.
Narayan, S., Rana, K. S., Sharma, M., Sharma, R. K., Talwar, P., Kapur, K., & Goyal, B. K. (2010). Profile of Live-born Infants of In-vitro Fertilisation. Medical journal, Armed Forces India, 66(1), 18-21. https://doi.org/10.1016/S0377-1237(10)80085-1
Narayan, S, et al. "Profile of Live-born Infants of In-vitro Fertilisation." Medical journal, Armed Forces India vol. 66,1 (2010): 18-21. doi: https://doi.org/10.1016/S0377-1237(10)80085-1
Narayan S, Rana KS, Sharma M, Sharma RK, Talwar P, Kapur K, Goyal BK. Profile of Live-born Infants of In-vitro Fertilisation. Med J Armed Forces India. 2010 Jan;66(1):18-21. doi: 10.1016/S0377-1237(10)80085-1. Epub 2011 Jul 21. PMID: 27365697; PMCID: PMC4920915.
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Xanthogranulomatous Salpingooophoritis: The Youngest Documented Case Report.

Case reports in obstetrics and gynecology

Tanwar H, Joshi A, Wagaskar V, Kini S, Bachhav M.
PMID: 26114000
Case Rep Obstet Gynecol. 2015;2015:237250. doi: 10.1155/2015/237250. Epub 2015 May 31.

Background. Xanthogranulomatous inflammation is an uncommon affection of the female genital tract. The youngest case reported of xanthogranulomatous salpingooophoritis in literature was by Shilpa et al. in 2013 in an eighteen-year-old female. Case Report. We report a case of...

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Tanwar H, Joshi A, Wagaskar V, et al. Xanthogranulomatous Salpingooophoritis: The Youngest Documented Case Report. Case Rep Obstet Gynecol. 2015;2015:237250doi: 10.1155/2015/237250.
Tanwar, H., Joshi, A., Wagaskar, V., Kini, S., & Bachhav, M. (2015). Xanthogranulomatous Salpingooophoritis: The Youngest Documented Case Report. Case reports in obstetrics and gynecology, 2015237250. https://doi.org/10.1155/2015/237250
Tanwar, Harshawardhan, et al. "Xanthogranulomatous Salpingooophoritis: The Youngest Documented Case Report." Case reports in obstetrics and gynecology vol. 2015 (2015): 237250. doi: https://doi.org/10.1155/2015/237250
Tanwar H, Joshi A, Wagaskar V, Kini S, Bachhav M. Xanthogranulomatous Salpingooophoritis: The Youngest Documented Case Report. Case Rep Obstet Gynecol. 2015;2015:237250. doi: 10.1155/2015/237250. Epub 2015 May 31. PMID: 26114000; PMCID: PMC4465692.
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Quiz - 2014.

Journal of clinical orthopaedics and trauma

Lal H, Tanwar Y, Singh S.
PMID: 25983471
J Clin Orthop Trauma. 2014 Mar;5(1):51-8. doi: 10.1016/j.jcot.2014.01.005.

No abstract available.

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Lal H, Tanwar Y, Singh S. Quiz - 2014. J Clin Orthop Trauma. 2014;5(1):51-8doi: 10.1016/j.jcot.2014.01.005.
Lal, H., Tanwar, Y., & Singh, S. (2014). Quiz - 2014. Journal of clinical orthopaedics and trauma, 5(1), 51-8. https://doi.org/10.1016/j.jcot.2014.01.005
Lal, Hitesh, et al. "Quiz - 2014." Journal of clinical orthopaedics and trauma vol. 5,1 (2014): 51-8. doi: https://doi.org/10.1016/j.jcot.2014.01.005
Lal H, Tanwar Y, Singh S. Quiz - 2014. J Clin Orthop Trauma. 2014 Mar;5(1):51-8. doi: 10.1016/j.jcot.2014.01.005. PMID: 25983471; PMCID: PMC4009457.
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Single piece artificial urinary sphincter for secondary incontinence following successful repair of post traumatic urethral injury.

Journal of Indian Association of Pediatric Surgeons

Kandpal DK, Rawat SK, Kanwar S, Baruha A, Chowdhary SK.
PMID: 24347870
J Indian Assoc Pediatr Surg. 2013 Oct;18(4):152-4. doi: 10.4103/0971-9261.121120.

Post traumatic urethral injury is uncommon in children. The management of this condition is dependent on the severity of injury. Initial suprapubic cystostomy with delayed repair is the conventional treatment. Successful reconstruction of urethral injury may be followed by...

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Kandpal DK, Rawat SK, Kanwar S, et al. Single piece artificial urinary sphincter for secondary incontinence following successful repair of post traumatic urethral injury. J Indian Assoc Pediatr Surg. 2013;18(4):152-4doi: 10.4103/0971-9261.121120.
Kandpal, D. K., Rawat, S. K., Kanwar, S., Baruha, A., & Chowdhary, S. K. (2013). Single piece artificial urinary sphincter for secondary incontinence following successful repair of post traumatic urethral injury. Journal of Indian Association of Pediatric Surgeons, 18(4), 152-4. https://doi.org/10.4103/0971-9261.121120
Kandpal, D K, et al. "Single piece artificial urinary sphincter for secondary incontinence following successful repair of post traumatic urethral injury." Journal of Indian Association of Pediatric Surgeons vol. 18,4 (2013): 152-4. doi: https://doi.org/10.4103/0971-9261.121120
Kandpal DK, Rawat SK, Kanwar S, Baruha A, Chowdhary SK. Single piece artificial urinary sphincter for secondary incontinence following successful repair of post traumatic urethral injury. J Indian Assoc Pediatr Surg. 2013 Oct;18(4):152-4. doi: 10.4103/0971-9261.121120. PMID: 24347870; PMCID: PMC3853858.
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