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Patents and literature.

Applied biochemistry and biotechnology

Kit M, Narasimhan MJ, Anderson JA, Zimmermann U, Pilwat G, Furuya T, Tani Y, Kolehmainen SE, Tarkkanen V, Barrett SP, Gestrelius SM, Belloc A, Florent J, Lunel J, Palla J, Mancy D, Bailey JE, Cho YK, Mouri T, Kayama H, Foley SE, Oriel PJ, Epstein CC, Kimura K, Spraker PW, Ljungdahl LG, Wieget JK, Levine DW, Thilly WG, Wang DI, Wong JS, Eisinger MG, Young FE, Wilson GA, Mottice SL, Green H, Kehinde O, Buhler M, Olofsson M, Osseux PF, Degen L, Branduzzi P, Olivieri R, Cimini N, Kang KS, Veeder GT, Latymer Z, Andersen G, Drobot W, Monsheimer R, Pfleiderer E, Hidaka H, Kohno T, Eida T, Weisrock WP, Stevens VC, Takezawa K, Hiratani H, Wandrey C, Wichmann R, Leuchtenberger W, Kula M, Buckmann A, Troller J, Koshugi J, Frommer W, Muller L, Schmidt D, Puls W, Krause H, Heber U, Cohen SN, Wahl GM, Stark GR, Collins J, Hohn B, Sugano H, Matsui Y.
PMID: 24234232
Appl Biochem Biotechnol. 1982 May;7(3):217-30. doi: 10.1007/BF02798299.

No abstract available.

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Kit M, Narasimhan MJ, Anderson JA, et al. Patents and literature. Appl Biochem Biotechnol. 1982;7(3):217-30doi: 10.1007/BF02798299.
Kit, M., Narasimhan, M. J., Anderson, J. A., Zimmermann, U., Pilwat, G., Furuya, T., Tani, Y., Kolehmainen, S. E., Tarkkanen, V., Barrett, S. P., Gestrelius, S. M., Belloc, A., Florent, J., Lunel, J., Palla, J., Mancy, D., Bailey, J. E., Cho, Y. K., Mouri, T., Kayama, H., Foley, S. E., Oriel, P. J., Epstein, C. C., Kimura, K., Spraker, P. W., Ljungdahl, L. G., Wieget, J. K., Levine, D. W., Thilly, W. G., Wang, D. I., Wong, J. S., Eisinger, M. G., Young, F. E., Wilson, G. A., Mottice, S. L., Green, H., Kehinde, O., Buhler, M., Olofsson, M., Osseux, P. F., Degen, L., Branduzzi, P., Olivieri, R., Cimini, N., Kang, K. S., Veeder, G. T., Latymer, Z., Andersen, G., Drobot, W., Monsheimer, R., Pfleiderer, E., Hidaka, H., Kohno, T., Eida, T., Weisrock, W. P., Stevens, V. C., Takezawa, K., Hiratani, H., Wandrey, C., Wichmann, R., Leuchtenberger, W., Kula, M., Buckmann, A., Troller, J., Koshugi, J., Frommer, W., Muller, L., Schmidt, D., Puls, W., Krause, H., Heber, U., Cohen, S. N., Wahl, G. M., Stark, G. R., Collins, J., Hohn, B., Sugano, H., & Matsui, Y. (1982). Patents and literature. Applied biochemistry and biotechnology, 7(3), 217-30. https://doi.org/10.1007/BF02798299
Kit, M, et al. "Patents and literature." Applied biochemistry and biotechnology vol. 7,3 (1982): 217-30. doi: https://doi.org/10.1007/BF02798299
Kit M, Narasimhan MJ, Anderson JA, Zimmermann U, Pilwat G, Furuya T, Tani Y, Kolehmainen SE, Tarkkanen V, Barrett SP, Gestrelius SM, Belloc A, Florent J, Lunel J, Palla J, Mancy D, Bailey JE, Cho YK, Mouri T, Kayama H, Foley SE, Oriel PJ, Epstein CC, Kimura K, Spraker PW, Ljungdahl LG, Wieget JK, Levine DW, Thilly WG, Wang DI, Wong JS, Eisinger MG, Young FE, Wilson GA, Mottice SL, Green H, Kehinde O, Buhler M, Olofsson M, Osseux PF, Degen L, Branduzzi P, Olivieri R, Cimini N, Kang KS, Veeder GT, Latymer Z, Andersen G, Drobot W, Monsheimer R, Pfleiderer E, Hidaka H, Kohno T, Eida T, Weisrock WP, Stevens VC, Takezawa K, Hiratani H, Wandrey C, Wichmann R, Leuchtenberger W, Kula M, Buckmann A, Troller J, Koshugi J, Frommer W, Muller L, Schmidt D, Puls W, Krause H, Heber U, Cohen SN, Wahl GM, Stark GR, Collins J, Hohn B, Sugano H, Matsui Y. Patents and literature. Appl Biochem Biotechnol. 1982 May;7(3):217-30. doi: 10.1007/BF02798299. PMID: 24234232.
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Polarized backscattering by clusters of spherical particles.

Optics letters

Virkki A, Markkanen J, Tyynelä J, Peltoniemi JI, Muinonen K.
PMID: 26258383
Opt Lett. 2015 Aug 01;40(15):3663-6. doi: 10.1364/OL.40.003663.

The linear and circular polarization ratios for clusters of spherical particles averaged over multiple orientations show a systematic pattern as a function of the refractive index and the size parameter. We show that, at backscattering, the depolarizing behavior of...

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Virkki A, Markkanen J, Tyynelä J, et al. Polarized backscattering by clusters of spherical particles. Opt Lett. 2015;40(15):3663-6doi: 10.1364/OL.40.003663.
Virkki, A., Markkanen, J., Tyynelä, J., Peltoniemi, J. I., & Muinonen, K. (2015). Polarized backscattering by clusters of spherical particles. Optics letters, 40(15), 3663-6. https://doi.org/10.1364/OL.40.003663
Virkki, Anne, et al. "Polarized backscattering by clusters of spherical particles." Optics letters vol. 40,15 (2015): 3663-6. doi: https://doi.org/10.1364/OL.40.003663
Virkki A, Markkanen J, Tyynelä J, Peltoniemi JI, Muinonen K. Polarized backscattering by clusters of spherical particles. Opt Lett. 2015 Aug 01;40(15):3663-6. doi: 10.1364/OL.40.003663. PMID: 26258383.
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[Neck lump--fine-needle aspiration biopsy specimen in diagnostics and planning of therapy].

Duodecim; laaketieteellinen aikakauskirja

Atula T, Tarkkanen J, Aro K.
PMID: 25558601
Duodecim. 2014;130(22):2405-12.

In elucidating the cause of a non-tender neck lump, the age of the patient, location and finding on palpation of lumps, and clinical examination of ear, nose and throat disorders and possible other findings are crucial. Fine-needle aspiration biopsy...

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Atula T, Tarkkanen J, Aro K. Kaulakyhmy--ohutneulabiopsia diagnostiikassa ja hoidon suunnittelussa. [Neck lump--fine-needle aspiration biopsy specimen in diagnostics and planning of therapy]. Duodecim. 2014;130(22):2405-12
Atula, T., Tarkkanen, J., & Aro, K. (2014). Kaulakyhmy--ohutneulabiopsia diagnostiikassa ja hoidon suunnittelussa. [Neck lump--fine-needle aspiration biopsy specimen in diagnostics and planning of therapy]. Duodecim; laaketieteellinen aikakauskirja, 130(22), 2405-12.
Atula, Timo, et al. "Kaulakyhmy--ohutneulabiopsia diagnostiikassa ja hoidon suunnittelussa." [Neck lump--fine-needle aspiration biopsy specimen in diagnostics and planning of therapy]. Duodecim; laaketieteellinen aikakauskirja vol. 130,22 (2014): 2405-12.
Atula T, Tarkkanen J, Aro K. Kaulakyhmy--ohutneulabiopsia diagnostiikassa ja hoidon suunnittelussa. [Neck lump--fine-needle aspiration biopsy specimen in diagnostics and planning of therapy]. Duodecim. 2014;130(22):2405-12. Finnish. PMID: 25558601.
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On-line monitoring of continuous beer fermentation process using automatic membrane inlet mass spectrometric system.

Talanta

Tarkiainen V, Kotiaho T, Mattila I, Virkajärvi I, Aristidou A, Ketola RA.
PMID: 18969939
Talanta. 2005 Mar 15;65(5):1254-63. doi: 10.1016/j.talanta.2004.08.051.

A fully automatic membrane inlet mass spectrometric (MIMS) on-line instrumentation for the analysis of aroma compounds in continuous beer fermentation processes was constructed and tested. The instrumentation includes automatic filtration of the sample stream, flushing of all tubing between...

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Tarkiainen V, Kotiaho T, Mattila I, et al. On-line monitoring of continuous beer fermentation process using automatic membrane inlet mass spectrometric system. Talanta. 2005;65(5):1254-63doi: 10.1016/j.talanta.2004.08.051.
Tarkiainen, V., Kotiaho, T., Mattila, I., Virkajärvi, I., Aristidou, A., & Ketola, R. A. (2005). On-line monitoring of continuous beer fermentation process using automatic membrane inlet mass spectrometric system. Talanta, 65(5), 1254-63. https://doi.org/10.1016/j.talanta.2004.08.051
Tarkiainen, Virpi, et al. "On-line monitoring of continuous beer fermentation process using automatic membrane inlet mass spectrometric system." Talanta vol. 65,5 (2005): 1254-63. doi: https://doi.org/10.1016/j.talanta.2004.08.051
Tarkiainen V, Kotiaho T, Mattila I, Virkajärvi I, Aristidou A, Ketola RA. On-line monitoring of continuous beer fermentation process using automatic membrane inlet mass spectrometric system. Talanta. 2005 Mar 15;65(5):1254-63. doi: 10.1016/j.talanta.2004.08.051. PMID: 18969939.
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Escherichia coli plasmid production in fermenter.

Biotechnology and bioengineering

Reinikainen P, Korpela K, Nissinen V, Olkku J, Söderlund H, Markkanen P.
PMID: 18587929
Biotechnol Bioeng. 1989 Jan 20;33(4):386-93. doi: 10.1002/bit.260330403.

Escherichia coli harboring a recombinant plasmid was grown in a fermenter to study the effects of selected process parameters on the growth of the microbe and on plasmid amplification with chloramphenicol treatment. Eighteen fermentations were carried out according to...

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Reinikainen P, Korpela K, Nissinen V, et al. Escherichia coli plasmid production in fermenter. Biotechnol Bioeng. 1989;33(4):386-93doi: 10.1002/bit.260330403.
Reinikainen, P., Korpela, K., Nissinen, V., Olkku, J., Söderlund, H., & Markkanen, P. (1989). Escherichia coli plasmid production in fermenter. Biotechnology and bioengineering, 33(4), 386-93. https://doi.org/10.1002/bit.260330403
Reinikainen, P, et al. "Escherichia coli plasmid production in fermenter." Biotechnology and bioengineering vol. 33,4 (1989): 386-93. doi: https://doi.org/10.1002/bit.260330403
Reinikainen P, Korpela K, Nissinen V, Olkku J, Söderlund H, Markkanen P. Escherichia coli plasmid production in fermenter. Biotechnol Bioeng. 1989 Jan 20;33(4):386-93. doi: 10.1002/bit.260330403. PMID: 18587929.
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Hyperon polarization asymmetry: Polarized beams and Omega - production.

Physical review. D, Particles and fields

DeGrand TA, Markkanen J, Miettinen HI.
PMID: 9956428
Phys Rev D Part Fields. 1985 Nov 01;32(9):2445-2448. doi: 10.1103/physrevd.32.2445.

No abstract available.

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DeGrand TA, Markkanen J, Miettinen HI. Hyperon polarization asymmetry: Polarized beams and Omega - production. Phys Rev D Part Fields. 1985;32(9):2445-2448doi: 10.1103/physrevd.32.2445.
DeGrand, T. A., Markkanen, J., & Miettinen, H. I. (1985). Hyperon polarization asymmetry: Polarized beams and Omega - production. Physical review. D, Particles and fields, 32(9), 2445-2448. https://doi.org/10.1103/physrevd.32.2445
DeGrand, et al. "Hyperon polarization asymmetry: Polarized beams and Omega - production." Physical review. D, Particles and fields vol. 32,9 (1985): 2445-2448. doi: https://doi.org/10.1103/physrevd.32.2445
DeGrand TA, Markkanen J, Miettinen HI. Hyperon polarization asymmetry: Polarized beams and Omega - production. Phys Rev D Part Fields. 1985 Nov 01;32(9):2445-2448. doi: 10.1103/physrevd.32.2445. PMID: 9956428.
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Challenging Management of Plexiform Schwannoma and Plexiform Neurofibroma.

The Journal of craniofacial surgery

Nicoli TK, Saat R, Tarkkanen J, Kinnunen I, Mäkitie AA, Jero J.
PMID: 34855632
J Craniofac Surg. 2021 Dec 02; doi: 10.1097/SCS.0000000000008381. Epub 2021 Dec 02.

ABSTRACT: Plexiform variants of neurofibromas and schwannomas are rare and typically arise in superficial soft tissues in the head and neck region. The treatment of these tumors is challenging and no generally accepted guidelines exist for their optimal management....

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Nicoli TK, Saat R, Tarkkanen J, et al. Challenging Management of Plexiform Schwannoma and Plexiform Neurofibroma. J Craniofac Surg. 2021;doi: 10.1097/SCS.0000000000008381.
Nicoli, T. K., Saat, R., Tarkkanen, J., Kinnunen, I., Mäkitie, A. A., & Jero, J. (2021). Challenging Management of Plexiform Schwannoma and Plexiform Neurofibroma. The Journal of craniofacial surgery, . https://doi.org/10.1097/SCS.0000000000008381
Nicoli, Taija K, et al. "Challenging Management of Plexiform Schwannoma and Plexiform Neurofibroma." The Journal of craniofacial surgery vol. (2021). doi: https://doi.org/10.1097/SCS.0000000000008381
Nicoli TK, Saat R, Tarkkanen J, Kinnunen I, Mäkitie AA, Jero J. Challenging Management of Plexiform Schwannoma and Plexiform Neurofibroma. J Craniofac Surg. 2021 Dec 02; doi: 10.1097/SCS.0000000000008381. Epub 2021 Dec 02. PMID: 34855632.
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Homogeneous nucleation of carbon dioxide in supersonic nozzles II: molecular dynamics simulations and properties of nucleating clusters.

Physical chemistry chemical physics : PCCP

Halonen R, Tikkanen V, Reischl B, Dingilian KK, Wyslouzil BE, Vehkamäki H.
PMID: 33595558
Phys Chem Chem Phys. 2021 Feb 28;23(8):4517-4529. doi: 10.1039/d0cp05653g. Epub 2021 Feb 17.

Large scale molecular dynamics simulations of the homogeneous nucleation of carbon dioxide in an argon atmosphere were carried out at temperatures between 75 and 105 K. Extensive analyses of the nucleating clusters' structural and energetic properties were performed to...

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Halonen R, Tikkanen V, Reischl B, et al. Homogeneous nucleation of carbon dioxide in supersonic nozzles II: molecular dynamics simulations and properties of nucleating clusters. Phys Chem Chem Phys. 2021;23(8):4517-4529doi: 10.1039/d0cp05653g.
Halonen, R., Tikkanen, V., Reischl, B., Dingilian, K. K., Wyslouzil, B. E., & Vehkamäki, H. (2021). Homogeneous nucleation of carbon dioxide in supersonic nozzles II: molecular dynamics simulations and properties of nucleating clusters. Physical chemistry chemical physics : PCCP, 23(8), 4517-4529. https://doi.org/10.1039/d0cp05653g
Halonen, Roope, et al. "Homogeneous nucleation of carbon dioxide in supersonic nozzles II: molecular dynamics simulations and properties of nucleating clusters." Physical chemistry chemical physics : PCCP vol. 23,8 (2021): 4517-4529. doi: https://doi.org/10.1039/d0cp05653g
Halonen R, Tikkanen V, Reischl B, Dingilian KK, Wyslouzil BE, Vehkamäki H. Homogeneous nucleation of carbon dioxide in supersonic nozzles II: molecular dynamics simulations and properties of nucleating clusters. Phys Chem Chem Phys. 2021 Feb 28;23(8):4517-4529. doi: 10.1039/d0cp05653g. Epub 2021 Feb 17. PMID: 33595558.
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Measuring DNA Damage Using the Alkaline Comet Assay in Cultured Cells.

Bio-protocol

Clementi E, Garajova Z, Markkanen E.
PMID: 34541038
Bio Protoc. 2021 Aug 20;11(16):e4119. doi: 10.21769/BioProtoc.4119. eCollection 2021 Aug 20.

Maintenance of DNA integrity is of pivotal importance for cells to circumvent detrimental processes that can ultimately lead to the development of various diseases. In the face of a plethora of endogenous and exogenous DNA-damaging agents, cells have evolved...

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Clementi E, Garajova Z, Markkanen E. Measuring DNA Damage Using the Alkaline Comet Assay in Cultured Cells. Bio Protoc. 2021;11(16):e4119doi: 10.21769/BioProtoc.4119.
Clementi, E., Garajova, Z., & Markkanen, E. (2021). Measuring DNA Damage Using the Alkaline Comet Assay in Cultured Cells. Bio-protocol, 11(16), e4119. https://doi.org/10.21769/BioProtoc.4119
Clementi, Elena, et al. "Measuring DNA Damage Using the Alkaline Comet Assay in Cultured Cells." Bio-protocol vol. 11,16 (2021): e4119. doi: https://doi.org/10.21769/BioProtoc.4119
Clementi E, Garajova Z, Markkanen E. Measuring DNA Damage Using the Alkaline Comet Assay in Cultured Cells. Bio Protoc. 2021 Aug 20;11(16):e4119. doi: 10.21769/BioProtoc.4119. eCollection 2021 Aug 20. PMID: 34541038; PMCID: PMC8413625.
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Scattering of light by a large, densely packed agglomerate of small silica spheres.

Optics letters

Väisänen T, Markkanen J, Hadamcik E, Renard JB, Lasue J, Levasseur-Regourd AC, Blum J, Muinonen K.
PMID: 32235972
Opt Lett. 2020 Apr 01;45(7):1679-1682. doi: 10.1364/OL.382240.

We model the measured phase function and degree of linear polarization of a macroscopic agglomerate made of micrometer-scale silica spheres using the methodology of multiple scattering. In the laboratory work, the agglomerate is produced ballistically, characterized by scanning electron...

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Väisänen T, Markkanen J, Hadamcik E, et al. Scattering of light by a large, densely packed agglomerate of small silica spheres. Opt Lett. 2020;45(7):1679-1682doi: 10.1364/OL.382240.
Väisänen, T., Markkanen, J., Hadamcik, E., Renard, J. B., Lasue, J., Levasseur-Regourd, A. C., Blum, J., & Muinonen, K. (2020). Scattering of light by a large, densely packed agglomerate of small silica spheres. Optics letters, 45(7), 1679-1682. https://doi.org/10.1364/OL.382240
Väisänen, T, et al. "Scattering of light by a large, densely packed agglomerate of small silica spheres." Optics letters vol. 45,7 (2020): 1679-1682. doi: https://doi.org/10.1364/OL.382240
Väisänen T, Markkanen J, Hadamcik E, Renard JB, Lasue J, Levasseur-Regourd AC, Blum J, Muinonen K. Scattering of light by a large, densely packed agglomerate of small silica spheres. Opt Lett. 2020 Apr 01;45(7):1679-1682. doi: 10.1364/OL.382240. PMID: 32235972.
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Stress and Tinnitus; Transcutaneous Auricular Vagal Nerve Stimulation Attenuates Tinnitus-Triggered Stress Reaction.

Frontiers in psychology

Ylikoski J, Markkanen M, Pirvola U, Lehtimäki JA, Ylikoski M, Jing Z, Sinkkonen ST, Mäkitie A.
PMID: 33041937
Front Psychol. 2020 Sep 17;11:570196. doi: 10.3389/fpsyg.2020.570196. eCollection 2020.

INTRODUCTION: Tinnitus can become a strong stressor for some individuals, leading to imbalance of the autonomous nervous system with reduction of parasympathetic activity. It can manifest itself as sleep disturbances, anxiety and even depression. This condition can be reversed...

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Ylikoski J, Markkanen M, Pirvola U, et al. Stress and Tinnitus; Transcutaneous Auricular Vagal Nerve Stimulation Attenuates Tinnitus-Triggered Stress Reaction. Front Psychol. 2020;11:570196doi: 10.3389/fpsyg.2020.570196.
Ylikoski, J., Markkanen, M., Pirvola, U., Lehtimäki, J. A., Ylikoski, M., Jing, Z., Sinkkonen, S. T., & Mäkitie, A. (2020). Stress and Tinnitus; Transcutaneous Auricular Vagal Nerve Stimulation Attenuates Tinnitus-Triggered Stress Reaction. Frontiers in psychology, 11570196. https://doi.org/10.3389/fpsyg.2020.570196
Ylikoski, Jukka, et al. "Stress and Tinnitus; Transcutaneous Auricular Vagal Nerve Stimulation Attenuates Tinnitus-Triggered Stress Reaction." Frontiers in psychology vol. 11 (2020): 570196. doi: https://doi.org/10.3389/fpsyg.2020.570196
Ylikoski J, Markkanen M, Pirvola U, Lehtimäki JA, Ylikoski M, Jing Z, Sinkkonen ST, Mäkitie A. Stress and Tinnitus; Transcutaneous Auricular Vagal Nerve Stimulation Attenuates Tinnitus-Triggered Stress Reaction. Front Psychol. 2020 Sep 17;11:570196. doi: 10.3389/fpsyg.2020.570196. eCollection 2020. PMID: 33041937; PMCID: PMC7527536.
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[Experimental glaucoma].

Duodecim; laaketieteellinen aikakauskirja

Tarkkanen A.
PMID: 5360818
Duodecim. 1969;85(13):791-2.

No abstract available.

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Tarkkanen A. Kokeellinen glaukooma. [Experimental glaucoma]. Duodecim. 1969;85(13):791-2
Tarkkanen, A. (1969). Kokeellinen glaukooma. [Experimental glaucoma]. Duodecim; laaketieteellinen aikakauskirja, 85(13), 791-2.
Tarkkanen, A. "Kokeellinen glaukooma." [Experimental glaucoma]. Duodecim; laaketieteellinen aikakauskirja vol. 85,13 (1969): 791-2.
Tarkkanen A. Kokeellinen glaukooma. [Experimental glaucoma]. Duodecim. 1969;85(13):791-2. Finnish. PMID: 5360818.
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