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Cell-by-Cell Deconstruction of Stem Cell Niches.

Cell stem cell

Tikhonova AN, Lasry A, Austin R, Aifantis I.
PMID: 32619515
Cell Stem Cell. 2020 Jul 02;27(1):19-34. doi: 10.1016/j.stem.2020.06.013.

Single-cell sequencing approaches offer exploration of tissue architecture at unprecedented resolution. These tools are especially powerful when deconvoluting highly specialized microenvironments, such as stem cell (SC) niches. Here, we review single-cell studies that map the cellular and transcriptional makeup...

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Tikhonova AN, Lasry A, Austin R, et al. Cell-by-Cell Deconstruction of Stem Cell Niches. Cell Stem Cell. 2020;27(1):19-34doi: 10.1016/j.stem.2020.06.013.
Tikhonova, A. N., Lasry, A., Austin, R., & Aifantis, I. (2020). Cell-by-Cell Deconstruction of Stem Cell Niches. Cell stem cell, 27(1), 19-34. https://doi.org/10.1016/j.stem.2020.06.013
Tikhonova, Anastasia N, et al. "Cell-by-Cell Deconstruction of Stem Cell Niches." Cell stem cell vol. 27,1 (2020): 19-34. doi: https://doi.org/10.1016/j.stem.2020.06.013
Tikhonova AN, Lasry A, Austin R, Aifantis I. Cell-by-Cell Deconstruction of Stem Cell Niches. Cell Stem Cell. 2020 Jul 02;27(1):19-34. doi: 10.1016/j.stem.2020.06.013. PMID: 32619515; PMCID: PMC8176558.
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Protein-Protein Interactions in Alpha-Synuclein Biogenesis: New Potential Targets in Parkinson's Disease.

Frontiers in aging neuroscience

Hernandez SM, Tikhonova EB, Karamyshev AL.
PMID: 32256340
Front Aging Neurosci. 2020 Mar 17;12:72. doi: 10.3389/fnagi.2020.00072. eCollection 2020.

Parkinson's disease (PD) is a debilitating neurodegenerative disorder defined by a loss of dopamine-producing neurons in the substantia nigra in the brain. It is associated with cytosolic inclusions known as Lewy bodies. The major component of Lewy bodies is...

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Hernandez SM, Tikhonova EB, Karamyshev AL. Protein-Protein Interactions in Alpha-Synuclein Biogenesis: New Potential Targets in Parkinson's Disease. Front Aging Neurosci. 2020;12:72doi: 10.3389/fnagi.2020.00072.
Hernandez, S. M., Tikhonova, E. B., & Karamyshev, A. L. (2020). Protein-Protein Interactions in Alpha-Synuclein Biogenesis: New Potential Targets in Parkinson's Disease. Frontiers in aging neuroscience, 1272. https://doi.org/10.3389/fnagi.2020.00072
Hernandez, Sarah M, et al. "Protein-Protein Interactions in Alpha-Synuclein Biogenesis: New Potential Targets in Parkinson's Disease." Frontiers in aging neuroscience vol. 12 (2020): 72. doi: https://doi.org/10.3389/fnagi.2020.00072
Hernandez SM, Tikhonova EB, Karamyshev AL. Protein-Protein Interactions in Alpha-Synuclein Biogenesis: New Potential Targets in Parkinson's Disease. Front Aging Neurosci. 2020 Mar 17;12:72. doi: 10.3389/fnagi.2020.00072. eCollection 2020. PMID: 32256340; PMCID: PMC7092629.
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Genome Sequence of Methylotrophic Azospirillum sp. Strain B2, Isolated from a Raised Sphagnum Bog.

Genome announcements

Grouzdev DS, Tikhonova EN, Krutkina MS, Kravchenko IK.
PMID: 29880595
Genome Announc. 2018 Jun 07;6(23). doi: 10.1128/genomeA.00492-18.

No abstract available.

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Grouzdev DS, Tikhonova EN, Krutkina MS, et al. Genome Sequence of Methylotrophic Azospirillum sp. Strain B2, Isolated from a Raised Sphagnum Bog. Genome Announc. 2018;6(23)doi: 10.1128/genomeA.00492-18.
Grouzdev, D. S., Tikhonova, E. N., Krutkina, M. S., & Kravchenko, I. K. (2018). Genome Sequence of Methylotrophic Azospirillum sp. Strain B2, Isolated from a Raised Sphagnum Bog. Genome announcements, 6(23), . https://doi.org/10.1128/genomeA.00492-18
Grouzdev, Denis S, et al. "Genome Sequence of Methylotrophic Azospirillum sp. Strain B2, Isolated from a Raised Sphagnum Bog." Genome announcements vol. 6,23 (2018). doi: https://doi.org/10.1128/genomeA.00492-18
Grouzdev DS, Tikhonova EN, Krutkina MS, Kravchenko IK. Genome Sequence of Methylotrophic Azospirillum sp. Strain B2, Isolated from a Raised Sphagnum Bog. Genome Announc. 2018 Jun 07;6(23). doi: 10.1128/genomeA.00492-18. PMID: 29880595; PMCID: PMC5992357.
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Sensitive Immunofluorescent Detection of the PRAME Antigen Using a Practical Antibody Conjugation Approach.

International journal of molecular sciences

Sapozhnikova KA, Misyurin VA, Ryazantsev DY, Kokin EA, Finashutina YP, Alexeeva AV, Ivanov IA, Kocharovskaya MV, Tikhonova NA, Popova GP, Alferova VA, Ustinov AV, Korshun VA, Brylev VA.
PMID: 34884647
Int J Mol Sci. 2021 Nov 27;22(23). doi: 10.3390/ijms222312845.

Bioconjugation of antibodies with various payloads has diverse applications across various fields, including drug delivery and targeted imaging techniques. Fluorescent immunoconjugates provide a promising tool for cancer diagnostics due to their high brightness, specificity, stability and target affinity. Fluorescent...

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Sapozhnikova KA, Misyurin VA, Ryazantsev DY, et al. Sensitive Immunofluorescent Detection of the PRAME Antigen Using a Practical Antibody Conjugation Approach. Int J Mol Sci. 2021;22(23)doi: 10.3390/ijms222312845.
Sapozhnikova, K. A., Misyurin, V. A., Ryazantsev, D. Y., Kokin, E. A., Finashutina, Y. P., Alexeeva, A. V., Ivanov, I. A., Kocharovskaya, M. V., Tikhonova, N. A., Popova, G. P., Alferova, V. A., Ustinov, A. V., Korshun, V. A., & Brylev, V. A. (2021). Sensitive Immunofluorescent Detection of the PRAME Antigen Using a Practical Antibody Conjugation Approach. International journal of molecular sciences, 22(23), . https://doi.org/10.3390/ijms222312845
Sapozhnikova, Ksenia A, et al. "Sensitive Immunofluorescent Detection of the PRAME Antigen Using a Practical Antibody Conjugation Approach." International journal of molecular sciences vol. 22,23 (2021). doi: https://doi.org/10.3390/ijms222312845
Sapozhnikova KA, Misyurin VA, Ryazantsev DY, Kokin EA, Finashutina YP, Alexeeva AV, Ivanov IA, Kocharovskaya MV, Tikhonova NA, Popova GP, Alferova VA, Ustinov AV, Korshun VA, Brylev VA. Sensitive Immunofluorescent Detection of the PRAME Antigen Using a Practical Antibody Conjugation Approach. Int J Mol Sci. 2021 Nov 27;22(23). doi: 10.3390/ijms222312845. PMID: 34884647; PMCID: PMC8657778.
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Expanding Characterized Diversity and the Pool of Complete Genome Sequences of .

Frontiers in microbiology

Oshkin IY, Danilova OV, But SY, Miroshnikov KK, Suleimanov RZ, Belova SE, Tikhonova EN, Kuznetsov NN, Khmelenina VN, Pimenov NV, Dedysh SN.
PMID: 34691008
Front Microbiol. 2021 Oct 06;12:756830. doi: 10.3389/fmicb.2021.756830. eCollection 2021.

The bacterial genus

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Oshkin IY, Danilova OV, But SY, et al. Expanding Characterized Diversity and the Pool of Complete Genome Sequences of . Front Microbiol. 2021;12:756830doi: 10.3389/fmicb.2021.756830.
Oshkin, I. Y., Danilova, O. V., But, S. Y., Miroshnikov, K. K., Suleimanov, R. Z., Belova, S. E., Tikhonova, E. N., Kuznetsov, N. N., Khmelenina, V. N., Pimenov, N. V., & Dedysh, S. N. (2021). Expanding Characterized Diversity and the Pool of Complete Genome Sequences of . Frontiers in microbiology, 12756830. https://doi.org/10.3389/fmicb.2021.756830
Oshkin, Igor Y, et al. "Expanding Characterized Diversity and the Pool of Complete Genome Sequences of ." Frontiers in microbiology vol. 12 (2021): 756830. doi: https://doi.org/10.3389/fmicb.2021.756830
Oshkin IY, Danilova OV, But SY, Miroshnikov KK, Suleimanov RZ, Belova SE, Tikhonova EN, Kuznetsov NN, Khmelenina VN, Pimenov NV, Dedysh SN. Expanding Characterized Diversity and the Pool of Complete Genome Sequences of . Front Microbiol. 2021 Oct 06;12:756830. doi: 10.3389/fmicb.2021.756830. eCollection 2021. PMID: 34691008; PMCID: PMC8527097.
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Probe Confined Dynamic Mapping for G Protein-Coupled Receptor Allosteric Site Prediction.

ACS central science

Ciancetta A, Gill AK, Ding T, Karlov DS, Chalhoub G, McCormick PJ, Tikhonova IG.
PMID: 34841058
ACS Cent Sci. 2021 Nov 24;7(11):1847-1862. doi: 10.1021/acscentsci.1c00802. Epub 2021 Sep 28.

Targeting G protein-coupled receptors (GPCRs) through allosteric sites offers advantages over orthosteric sites in identifying drugs with increased selectivity and potentially reduced side effects. In this study, we developed a probe confined dynamic mapping protocol that allows the prediction...

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Ciancetta A, Gill AK, Ding T, et al. Probe Confined Dynamic Mapping for G Protein-Coupled Receptor Allosteric Site Prediction. ACS Cent Sci. 2021;7(11):1847-1862doi: 10.1021/acscentsci.1c00802.
Ciancetta, A., Gill, A. K., Ding, T., Karlov, D. S., Chalhoub, G., McCormick, P. J., & Tikhonova, I. G. (2021). Probe Confined Dynamic Mapping for G Protein-Coupled Receptor Allosteric Site Prediction. ACS central science, 7(11), 1847-1862. https://doi.org/10.1021/acscentsci.1c00802
Ciancetta, Antonella, et al. "Probe Confined Dynamic Mapping for G Protein-Coupled Receptor Allosteric Site Prediction." ACS central science vol. 7,11 (2021): 1847-1862. doi: https://doi.org/10.1021/acscentsci.1c00802
Ciancetta A, Gill AK, Ding T, Karlov DS, Chalhoub G, McCormick PJ, Tikhonova IG. Probe Confined Dynamic Mapping for G Protein-Coupled Receptor Allosteric Site Prediction. ACS Cent Sci. 2021 Nov 24;7(11):1847-1862. doi: 10.1021/acscentsci.1c00802. Epub 2021 Sep 28. PMID: 34841058; PMCID: PMC8614102.
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Unexpected Role of Sterol Synthesis in RNA Stability and Translation in .

Biomedicines

Karamysheva ZN, Moitra S, Perez A, Mukherjee S, Tikhonova EB, Karamyshev AL, Zhang K.
PMID: 34205466
Biomedicines. 2021 Jun 19;9(6). doi: 10.3390/biomedicines9060696.

No abstract available.

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Karamysheva ZN, Moitra S, Perez A, et al. Unexpected Role of Sterol Synthesis in RNA Stability and Translation in . Biomedicines. 2021;9(6)doi: 10.3390/biomedicines9060696.
Karamysheva, Z. N., Moitra, S., Perez, A., Mukherjee, S., Tikhonova, E. B., Karamyshev, A. L., & Zhang, K. (2021). Unexpected Role of Sterol Synthesis in RNA Stability and Translation in . Biomedicines, 9(6), . https://doi.org/10.3390/biomedicines9060696
Karamysheva, Zemfira N, et al. "Unexpected Role of Sterol Synthesis in RNA Stability and Translation in ." Biomedicines vol. 9,6 (2021). doi: https://doi.org/10.3390/biomedicines9060696
Karamysheva ZN, Moitra S, Perez A, Mukherjee S, Tikhonova EB, Karamyshev AL, Zhang K. Unexpected Role of Sterol Synthesis in RNA Stability and Translation in . Biomedicines. 2021 Jun 19;9(6). doi: 10.3390/biomedicines9060696. PMID: 34205466; PMCID: PMC8235615.
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Indicators of Hypoxia Tolerance as Determined by Cellular Elements of Rat Blood.

Journal of evolutionary biochemistry and physiology

Kondashevskaya MV, Artemieva KA, Aleksankina VV, Tikhonova NB, Boltovskaya MN.
PMID: 34955551
J Evol Biochem Physiol. 2021;57(6):1231-1240. doi: 10.1134/S002209302106003X. Epub 2021 Dec 20.

Although hypoxia tolerance is mainly determined genetically, it is important to study individual variability of animal organisms in order to identify the factors that underlie their tolerance to hypoxic exposure. We investigated blood cell counts and coagulograms in Wistar...

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Kondashevskaya MV, Artemieva KA, Aleksankina VV, et al. Indicators of Hypoxia Tolerance as Determined by Cellular Elements of Rat Blood. J Evol Biochem Physiol. 2021;57(6):1231-1240doi: 10.1134/S002209302106003X.
Kondashevskaya, M. V., Artemieva, K. A., Aleksankina, V. V., Tikhonova, N. B., & Boltovskaya, M. N. (2021). Indicators of Hypoxia Tolerance as Determined by Cellular Elements of Rat Blood. Journal of evolutionary biochemistry and physiology, 57(6), 1231-1240. https://doi.org/10.1134/S002209302106003X
Kondashevskaya, M V, et al. "Indicators of Hypoxia Tolerance as Determined by Cellular Elements of Rat Blood." Journal of evolutionary biochemistry and physiology vol. 57,6 (2021): 1231-1240. doi: https://doi.org/10.1134/S002209302106003X
Kondashevskaya MV, Artemieva KA, Aleksankina VV, Tikhonova NB, Boltovskaya MN. Indicators of Hypoxia Tolerance as Determined by Cellular Elements of Rat Blood. J Evol Biochem Physiol. 2021;57(6):1231-1240. doi: 10.1134/S002209302106003X. Epub 2021 Dec 20. PMID: 34955551; PMCID: PMC8685807.
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Treatment with Autophagy Inducer Trehalose Alleviates Memory and Behavioral Impairments and Neuroinflammatory Brain Processes in db/db Mice.

Cells

Korolenko TA, Dubrovina NI, Ovsyukova MV, Bgatova NP, Tenditnik MV, Pupyshev AB, Akopyan AA, Goncharova NV, Lin CL, Zavjalov EL, Tikhonova MA, Amstislavskaya TG.
PMID: 34685538
Cells. 2021 Sep 27;10(10). doi: 10.3390/cells10102557.

Autophagy attenuation has been found in neurodegenerative diseases, aging, diabetes mellitus, and atherosclerosis. In experimental models of neurodegenerative diseases, the correction of autophagy in the brain reverses neuronal and behavioral deficits and hence seems to be a promising therapy...

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Korolenko TA, Dubrovina NI, Ovsyukova MV, et al. Treatment with Autophagy Inducer Trehalose Alleviates Memory and Behavioral Impairments and Neuroinflammatory Brain Processes in db/db Mice. Cells. 2021;10(10)doi: 10.3390/cells10102557.
Korolenko, T. A., Dubrovina, N. I., Ovsyukova, M. V., Bgatova, N. P., Tenditnik, M. V., Pupyshev, A. B., Akopyan, A. A., Goncharova, N. V., Lin, C. L., Zavjalov, E. L., Tikhonova, M. A., & Amstislavskaya, T. G. (2021). Treatment with Autophagy Inducer Trehalose Alleviates Memory and Behavioral Impairments and Neuroinflammatory Brain Processes in db/db Mice. Cells, 10(10), . https://doi.org/10.3390/cells10102557
Korolenko, Tatiana A, et al. "Treatment with Autophagy Inducer Trehalose Alleviates Memory and Behavioral Impairments and Neuroinflammatory Brain Processes in db/db Mice." Cells vol. 10,10 (2021). doi: https://doi.org/10.3390/cells10102557
Korolenko TA, Dubrovina NI, Ovsyukova MV, Bgatova NP, Tenditnik MV, Pupyshev AB, Akopyan AA, Goncharova NV, Lin CL, Zavjalov EL, Tikhonova MA, Amstislavskaya TG. Treatment with Autophagy Inducer Trehalose Alleviates Memory and Behavioral Impairments and Neuroinflammatory Brain Processes in db/db Mice. Cells. 2021 Sep 27;10(10). doi: 10.3390/cells10102557. PMID: 34685538; PMCID: PMC8533743.
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Indicators of Hypoxia Tolerance as Determined by Cellular Elements of Rat Blood.

Journal of evolutionary biochemistry and physiology

Kondashevskaya MV, Artemieva KA, Aleksankina VV, Tikhonova NB, Boltovskaya MN.
PMID: 34955551
J Evol Biochem Physiol. 2021;57(6):1231-1240. doi: 10.1134/S002209302106003X. Epub 2021 Dec 20.

Although hypoxia tolerance is mainly determined genetically, it is important to study individual variability of animal organisms in order to identify the factors that underlie their tolerance to hypoxic exposure. We investigated blood cell counts and coagulograms in Wistar...

Cite
Kondashevskaya MV, Artemieva KA, Aleksankina VV, et al. Indicators of Hypoxia Tolerance as Determined by Cellular Elements of Rat Blood. J Evol Biochem Physiol. 2021;57(6):1231-1240doi: 10.1134/S002209302106003X.
Kondashevskaya, M. V., Artemieva, K. A., Aleksankina, V. V., Tikhonova, N. B., & Boltovskaya, M. N. (2021). Indicators of Hypoxia Tolerance as Determined by Cellular Elements of Rat Blood. Journal of evolutionary biochemistry and physiology, 57(6), 1231-1240. https://doi.org/10.1134/S002209302106003X
Kondashevskaya, M V, et al. "Indicators of Hypoxia Tolerance as Determined by Cellular Elements of Rat Blood." Journal of evolutionary biochemistry and physiology vol. 57,6 (2021): 1231-1240. doi: https://doi.org/10.1134/S002209302106003X
Kondashevskaya MV, Artemieva KA, Aleksankina VV, Tikhonova NB, Boltovskaya MN. Indicators of Hypoxia Tolerance as Determined by Cellular Elements of Rat Blood. J Evol Biochem Physiol. 2021;57(6):1231-1240. doi: 10.1134/S002209302106003X. Epub 2021 Dec 20. PMID: 34955551; PMCID: PMC8685807.
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Author Correction: The bone marrow microenvironment at single-cell resolution.

Nature

Tikhonova AN, Dolgalev I, Hu H, Sivaraj KK, Hoxha E, Cuesta-Domínguez Á, Pinho S, Akhmetzyanova I, Gao J, Witkowski M, Guillamot M, Gutkin MC, Zhang Y, Marier C, Diefenbach C, Kousteni S, Heguy A, Zhong H, Fooksman DR, Butler JM, Economides A, Frenette PS, Adams RH, Satija R, Tsirigos A, Aifantis I.
PMID: 31296938
Nature. 2019 Aug;572(7767):E6. doi: 10.1038/s41586-019-1394-x.

An Amendment to this paper has been published and can be accessed via a link at the top of the paper.

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Tikhonova AN, Dolgalev I, Hu H, et al. Author Correction: The bone marrow microenvironment at single-cell resolution. Nature. 2019;572(7767):E6doi: 10.1038/s41586-019-1394-x.
Tikhonova, A. N., Dolgalev, I., Hu, H., Sivaraj, K. K., Hoxha, E., Cuesta-Domínguez, �. �., Pinho, S., Akhmetzyanova, I., Gao, J., Witkowski, M., Guillamot, M., Gutkin, M. C., Zhang, Y., Marier, C., Diefenbach, C., Kousteni, S., Heguy, A., Zhong, H., Fooksman, D. R., Butler, J. M., Economides, A., Frenette, P. S., Adams, R. H., Satija, R., Tsirigos, A., & Aifantis, I. (2019). Author Correction: The bone marrow microenvironment at single-cell resolution. Nature, 572(7767), E6. https://doi.org/10.1038/s41586-019-1394-x
Tikhonova, Anastasia N, et al. "Author Correction: The bone marrow microenvironment at single-cell resolution." Nature vol. 572,7767 (2019): E6. doi: https://doi.org/10.1038/s41586-019-1394-x
Tikhonova AN, Dolgalev I, Hu H, Sivaraj KK, Hoxha E, Cuesta-Domínguez Á, Pinho S, Akhmetzyanova I, Gao J, Witkowski M, Guillamot M, Gutkin MC, Zhang Y, Marier C, Diefenbach C, Kousteni S, Heguy A, Zhong H, Fooksman DR, Butler JM, Economides A, Frenette PS, Adams RH, Satija R, Tsirigos A, Aifantis I. Author Correction: The bone marrow microenvironment at single-cell resolution. Nature. 2019 Aug;572(7767):E6. doi: 10.1038/s41586-019-1394-x. PMID: 31296938.
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The real value of words: how target language linguistic modelling of foreign language teaching content shapes students' professional identity.

Heliyon

Bagiyan AY, Shiryaeva TA, Tikhonova EV, Mekeko NM.
PMID: 33869833
Heliyon. 2021 Mar 30;7(3):e06581. doi: 10.1016/j.heliyon.2021.e06581. eCollection 2021 Mar.

The paper focuses on the methods of linguistic analysis in the sphere of teaching foreign languages as a form of shaping students' identity. By putting forward the hypothesis that proper language acquisition should be based on fundamental cultural values...

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Bagiyan AY, Shiryaeva TA, Tikhonova EV, et al. The real value of words: how target language linguistic modelling of foreign language teaching content shapes students' professional identity. Heliyon. 2021;7(3):e06581doi: 10.1016/j.heliyon.2021.e06581.
Bagiyan, A. Y., Shiryaeva, T. A., Tikhonova, E. V., & Mekeko, N. M. (2021). The real value of words: how target language linguistic modelling of foreign language teaching content shapes students' professional identity. Heliyon, 7(3), e06581. https://doi.org/10.1016/j.heliyon.2021.e06581
Bagiyan, Alexander Y, et al. "The real value of words: how target language linguistic modelling of foreign language teaching content shapes students' professional identity." Heliyon vol. 7,3 (2021): e06581. doi: https://doi.org/10.1016/j.heliyon.2021.e06581
Bagiyan AY, Shiryaeva TA, Tikhonova EV, Mekeko NM. The real value of words: how target language linguistic modelling of foreign language teaching content shapes students' professional identity. Heliyon. 2021 Mar 30;7(3):e06581. doi: 10.1016/j.heliyon.2021.e06581. eCollection 2021 Mar. PMID: 33869833; PMCID: PMC8035504.
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