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Evaluation of probiotic potential of yeasts isolated from traditional cheeses manufactured in Serbia and Croatia.

Journal of intercultural ethnopharmacology

Živković M, Čadež N, Uroić K, Miljković M, Tolinački M, Doušova P, Kos B, Šušković J, Raspor P, Topisirović L, Golić N.
PMID: 26401378
J Intercult Ethnopharmacol. 2015 Jan-Mar;4(1):12-8. doi: 10.5455/jice.20141128051842. Epub 2015 Jan 03.

AIM: The aim of this study was to investigate the in vitro probiotic potential of dairy yeast isolates from artisanal cheeses manufactured in Serbia and Croatia.MATERIALS AND METHODS: Twelve yeast strains isolated from artisanal fresh soft and white brined...

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Živković M, Čadež N, Uroić K, et al. Evaluation of probiotic potential of yeasts isolated from traditional cheeses manufactured in Serbia and Croatia. J Intercult Ethnopharmacol. 2015;4(1):12-8doi: 10.5455/jice.20141128051842.
Živković, M., Čadež, N., Uroić, K., Miljković, M., Tolinački, M., Doušova, P., Kos, B., Šušković, J., Raspor, P., Topisirović, L., & Golić, N. (2015). Evaluation of probiotic potential of yeasts isolated from traditional cheeses manufactured in Serbia and Croatia. Journal of intercultural ethnopharmacology, 4(1), 12-8. https://doi.org/10.5455/jice.20141128051842
Živković, Milica, et al. "Evaluation of probiotic potential of yeasts isolated from traditional cheeses manufactured in Serbia and Croatia." Journal of intercultural ethnopharmacology vol. 4,1 (2015): 12-8. doi: https://doi.org/10.5455/jice.20141128051842
Živković M, Čadež N, Uroić K, Miljković M, Tolinački M, Doušova P, Kos B, Šušković J, Raspor P, Topisirović L, Golić N. Evaluation of probiotic potential of yeasts isolated from traditional cheeses manufactured in Serbia and Croatia. J Intercult Ethnopharmacol. 2015 Jan-Mar;4(1):12-8. doi: 10.5455/jice.20141128051842. Epub 2015 Jan 03. PMID: 26401378; PMCID: PMC4566759.
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Carbon Source Requirements for Exopolysaccharide Production by Lactobacillus casei CG11 and Partial Structure Analysis of the Polymer.

Applied and environmental microbiology

Cerning J, Renard CM, Thibault JF, Bouillanne C, Landon M, Desmazeaud M, Topisirovic L.
PMID: 16349427
Appl Environ Microbiol. 1994 Nov;60(11):3914-9. doi: 10.1128/aem.60.11.3914-3919.1994.

Exopolysaccharide production by Lactobacillus casei CG11 was studied in basal minimum medium containing various carbon sources (galactose, glucose, lactose, sucrose, maltose, melibiose) at concentrations of 2, 5, 10, and 20 g/liter. L. casei CG11 produced exopolysaccharides in basal minimum...

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Cerning J, Renard CM, Thibault JF, et al. Carbon Source Requirements for Exopolysaccharide Production by Lactobacillus casei CG11 and Partial Structure Analysis of the Polymer. Appl Environ Microbiol. 1994;60(11):3914-9doi: 10.1128/aem.60.11.3914-3919.1994.
Cerning, J., Renard, C. M., Thibault, J. F., Bouillanne, C., Landon, M., Desmazeaud, M., & Topisirovic, L. (1994). Carbon Source Requirements for Exopolysaccharide Production by Lactobacillus casei CG11 and Partial Structure Analysis of the Polymer. Applied and environmental microbiology, 60(11), 3914-9. https://doi.org/10.1128/aem.60.11.3914-3919.1994
Cerning, J, et al. "Carbon Source Requirements for Exopolysaccharide Production by Lactobacillus casei CG11 and Partial Structure Analysis of the Polymer." Applied and environmental microbiology vol. 60,11 (1994): 3914-9. doi: https://doi.org/10.1128/aem.60.11.3914-3919.1994
Cerning J, Renard CM, Thibault JF, Bouillanne C, Landon M, Desmazeaud M, Topisirovic L. Carbon Source Requirements for Exopolysaccharide Production by Lactobacillus casei CG11 and Partial Structure Analysis of the Polymer. Appl Environ Microbiol. 1994 Nov;60(11):3914-9. doi: 10.1128/aem.60.11.3914-3919.1994. PMID: 16349427; PMCID: PMC201915.
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RNA G-quadruplexes and their potential regulatory roles in translation.

Translation (Austin, Tex.)

Song J, Perreault JP, Topisirovic I, Richard S.
PMID: 28090421
Translation (Austin). 2016 Oct 04;4(2):e1244031. doi: 10.1080/21690731.2016.1244031. eCollection 2016.

DNA guanine (G)-rich 4-stranded helical nucleic acid structures called G-quadruplexes (G4), have been extensively studied during the last decades. However, emerging evidence reveals that 5'- and 3'-untranslated regions (5'- and 3'-UTRs) as well as open reading frames (ORFs) contain...

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Song J, Perreault JP, Topisirovic I, et al. RNA G-quadruplexes and their potential regulatory roles in translation. Translation (Austin). 2016;4(2):e1244031doi: 10.1080/21690731.2016.1244031.
Song, J., Perreault, J. P., Topisirovic, I., & Richard, S. (2016). RNA G-quadruplexes and their potential regulatory roles in translation. Translation (Austin, Tex.), 4(2), e1244031. https://doi.org/10.1080/21690731.2016.1244031
Song, Jingwen, et al. "RNA G-quadruplexes and their potential regulatory roles in translation." Translation (Austin, Tex.) vol. 4,2 (2016): e1244031. doi: https://doi.org/10.1080/21690731.2016.1244031
Song J, Perreault JP, Topisirovic I, Richard S. RNA G-quadruplexes and their potential regulatory roles in translation. Translation (Austin). 2016 Oct 04;4(2):e1244031. doi: 10.1080/21690731.2016.1244031. eCollection 2016. PMID: 28090421; PMCID: PMC5173311.
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Author Correction: Selective inhibitors of mTORC1 activate 4EBP1 and suppress tumor growth.

Nature chemical biology

Lee BJ, Boyer JA, Burnett GL, Thottumkara AP, Tibrewal N, Wilson SL, Hsieh T, Marquez A, Lorenzana EG, Evans JW, Hulea L, Kiss G, Liu H, Lee D, Larsson O, McLaughlan S, Topisirovic I, Wang Z, Wang Z, Zhao Y, Wildes D, Aggen JB, Singh M, Gill AL, Smith JAM, Rosen N.
PMID: 34188221
Nat Chem Biol. 2021 Aug;17(8):925. doi: 10.1038/s41589-021-00843-1.

No abstract available.

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Lee BJ, Boyer JA, Burnett GL, et al. Author Correction: Selective inhibitors of mTORC1 activate 4EBP1 and suppress tumor growth. Nat Chem Biol. 2021;17(8):925doi: 10.1038/s41589-021-00843-1.
Lee, B. J., Boyer, J. A., Burnett, G. L., Thottumkara, A. P., Tibrewal, N., Wilson, S. L., Hsieh, T., Marquez, A., Lorenzana, E. G., Evans, J. W., Hulea, L., Kiss, G., Liu, H., Lee, D., Larsson, O., McLaughlan, S., Topisirovic, I., Wang, Z., Wang, Z., Zhao, Y., Wildes, D., Aggen, J. B., Singh, M., Gill, A. L., Smith, J. A. M., & Rosen, N. (2021). Author Correction: Selective inhibitors of mTORC1 activate 4EBP1 and suppress tumor growth. Nature chemical biology, 17(8), 925. https://doi.org/10.1038/s41589-021-00843-1
Lee, Bianca J, et al. "Author Correction: Selective inhibitors of mTORC1 activate 4EBP1 and suppress tumor growth." Nature chemical biology vol. 17,8 (2021): 925. doi: https://doi.org/10.1038/s41589-021-00843-1
Lee BJ, Boyer JA, Burnett GL, Thottumkara AP, Tibrewal N, Wilson SL, Hsieh T, Marquez A, Lorenzana EG, Evans JW, Hulea L, Kiss G, Liu H, Lee D, Larsson O, McLaughlan S, Topisirovic I, Wang Z, Wang Z, Zhao Y, Wildes D, Aggen JB, Singh M, Gill AL, Smith JAM, Rosen N. Author Correction: Selective inhibitors of mTORC1 activate 4EBP1 and suppress tumor growth. Nat Chem Biol. 2021 Aug;17(8):925. doi: 10.1038/s41589-021-00843-1. PMID: 34188221.
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Translational reprogramming marks adaptation to asparagine restriction in cancer.

Nature cell biology

Pathria G, Lee JS, Hasnis E, Tandoc K, Scott DA, Verma S, Feng Y, Larue L, Sahu AD, Topisirovic I, Ruppin E, Ronai ZA.
PMID: 31740775
Nat Cell Biol. 2019 Dec;21(12):1590-1603. doi: 10.1038/s41556-019-0415-1. Epub 2019 Nov 18.

While amino acid restriction remains an attractive strategy for cancer therapy, metabolic adaptations limit its effectiveness. Here we demonstrate a role of translational reprogramming in the survival of asparagine-restricted cancer cells. Asparagine limitation in melanoma and pancreatic cancer cells...

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Pathria G, Lee JS, Hasnis E, et al. Translational reprogramming marks adaptation to asparagine restriction in cancer. Nat Cell Biol. 2019;21(12):1590-1603doi: 10.1038/s41556-019-0415-1.
Pathria, G., Lee, J. S., Hasnis, E., Tandoc, K., Scott, D. A., Verma, S., Feng, Y., Larue, L., Sahu, A. D., Topisirovic, I., Ruppin, E., & Ronai, Z. A. (2019). Translational reprogramming marks adaptation to asparagine restriction in cancer. Nature cell biology, 21(12), 1590-1603. https://doi.org/10.1038/s41556-019-0415-1
Pathria, Gaurav, et al. "Translational reprogramming marks adaptation to asparagine restriction in cancer." Nature cell biology vol. 21,12 (2019): 1590-1603. doi: https://doi.org/10.1038/s41556-019-0415-1
Pathria G, Lee JS, Hasnis E, Tandoc K, Scott DA, Verma S, Feng Y, Larue L, Sahu AD, Topisirovic I, Ruppin E, Ronai ZA. Translational reprogramming marks adaptation to asparagine restriction in cancer. Nat Cell Biol. 2019 Dec;21(12):1590-1603. doi: 10.1038/s41556-019-0415-1. Epub 2019 Nov 18. PMID: 31740775; PMCID: PMC7307327.
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Regulation of gene expression via translational buffering.

Biochimica et biophysica acta. Molecular cell research

Kusnadi EP, Timpone C, Topisirovic I, Larsson O, Furic L.
PMID: 34599983
Biochim Biophys Acta Mol Cell Res. 2022 Jan;1869(1):119140. doi: 10.1016/j.bbamcr.2021.119140. Epub 2021 Sep 30.

Translation of an mRNA represents a critical step during the expression of protein-coding genes. As mechanisms governing post-transcriptional regulation of gene expression are progressively unveiled, it is becoming apparent that transcriptional programs are not fully reflected in the proteome....

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Kusnadi EP, Timpone C, Topisirovic I, et al. Regulation of gene expression via translational buffering. Biochim Biophys Acta Mol Cell Res. 2021;1869(1):119140doi: 10.1016/j.bbamcr.2021.119140.
Kusnadi, E. P., Timpone, C., Topisirovic, I., Larsson, O., & Furic, L. (2022). Regulation of gene expression via translational buffering. Biochimica et biophysica acta. Molecular cell research, 1869(1), 119140. https://doi.org/10.1016/j.bbamcr.2021.119140
Kusnadi, Eric P, et al. "Regulation of gene expression via translational buffering." Biochimica et biophysica acta. Molecular cell research vol. 1869,1 (2022): 119140. doi: https://doi.org/10.1016/j.bbamcr.2021.119140
Kusnadi EP, Timpone C, Topisirovic I, Larsson O, Furic L. Regulation of gene expression via translational buffering. Biochim Biophys Acta Mol Cell Res. 2022 Jan;1869(1):119140. doi: 10.1016/j.bbamcr.2021.119140. Epub 2021 Sep 30. PMID: 34599983.
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Author Correction: Selective inhibitors of mTORC1 activate 4EBP1 and suppress tumor growth.

Nature chemical biology

Lee BJ, Boyer JA, Burnett GL, Thottumkara AP, Tibrewal N, Wilson SL, Hsieh T, Marquez A, Lorenzana EG, Evans JW, Hulea L, Kiss G, Liu H, Lee D, Larsson O, McLaughlan S, Topisirovic I, Wang Z, Wang Z, Zhao Y, Wildes D, Aggen JB, Singh M, Gill AL, Smith JAM, Rosen N.
PMID: 34616097
Nat Chem Biol. 2021 Nov;17(11):1209. doi: 10.1038/s41589-021-00905-4.

No abstract available.

Cite
Lee BJ, Boyer JA, Burnett GL, et al. Author Correction: Selective inhibitors of mTORC1 activate 4EBP1 and suppress tumor growth. Nat Chem Biol. 2021;17(11):1209doi: 10.1038/s41589-021-00905-4.
Lee, B. J., Boyer, J. A., Burnett, G. L., Thottumkara, A. P., Tibrewal, N., Wilson, S. L., Hsieh, T., Marquez, A., Lorenzana, E. G., Evans, J. W., Hulea, L., Kiss, G., Liu, H., Lee, D., Larsson, O., McLaughlan, S., Topisirovic, I., Wang, Z., Wang, Z., Zhao, Y., Wildes, D., Aggen, J. B., Singh, M., Gill, A. L., Smith, J. A. M., & Rosen, N. (2021). Author Correction: Selective inhibitors of mTORC1 activate 4EBP1 and suppress tumor growth. Nature chemical biology, 17(11), 1209. https://doi.org/10.1038/s41589-021-00905-4
Lee, Bianca J, et al. "Author Correction: Selective inhibitors of mTORC1 activate 4EBP1 and suppress tumor growth." Nature chemical biology vol. 17,11 (2021): 1209. doi: https://doi.org/10.1038/s41589-021-00905-4
Lee BJ, Boyer JA, Burnett GL, Thottumkara AP, Tibrewal N, Wilson SL, Hsieh T, Marquez A, Lorenzana EG, Evans JW, Hulea L, Kiss G, Liu H, Lee D, Larsson O, McLaughlan S, Topisirovic I, Wang Z, Wang Z, Zhao Y, Wildes D, Aggen JB, Singh M, Gill AL, Smith JAM, Rosen N. Author Correction: Selective inhibitors of mTORC1 activate 4EBP1 and suppress tumor growth. Nat Chem Biol. 2021 Nov;17(11):1209. doi: 10.1038/s41589-021-00905-4. PMID: 34616097.
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Adaptive translational pausing is a hallmark of the cellular response to severe environmental stress.

Molecular cell

Jobava R, Mao Y, Guan BJ, Hu D, Krokowski D, Chen CW, Shu XE, Chukwurah E, Wu J, Gao Z, Zagore LL, Merrick WC, Trifunovic A, Hsieh AC, Valadkhan S, Zhang Y, Qi X, Jankowsky E, Topisirovic I, Licatalosi DD, Qian SB, Hatzoglou M.
PMID: 34686314
Mol Cell. 2021 Oct 21;81(20):4191-4208.e8. doi: 10.1016/j.molcel.2021.09.029.

To survive, mammalian cells must adapt to environmental challenges. While the cellular response to mild stress has been widely studied, how cells respond to severe stress remains unclear. We show here that under severe hyperosmotic stress, cells enter a...

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Jobava R, Mao Y, Guan BJ, et al. Adaptive translational pausing is a hallmark of the cellular response to severe environmental stress. Mol Cell. 2021;81(20):4191-4208.e8doi: 10.1016/j.molcel.2021.09.029.
Jobava, R., Mao, Y., Guan, B. J., Hu, D., Krokowski, D., Chen, C. W., Shu, X. E., Chukwurah, E., Wu, J., Gao, Z., Zagore, L. L., Merrick, W. C., Trifunovic, A., Hsieh, A. C., Valadkhan, S., Zhang, Y., Qi, X., Jankowsky, E., Topisirovic, I., Licatalosi, D. D., Qian, S. B., & Hatzoglou, M. (2021). Adaptive translational pausing is a hallmark of the cellular response to severe environmental stress. Molecular cell, 81(20), 4191-4208.e8. https://doi.org/10.1016/j.molcel.2021.09.029
Jobava, Raul, et al. "Adaptive translational pausing is a hallmark of the cellular response to severe environmental stress." Molecular cell vol. 81,20 (2021): 4191-4208.e8. doi: https://doi.org/10.1016/j.molcel.2021.09.029
Jobava R, Mao Y, Guan BJ, Hu D, Krokowski D, Chen CW, Shu XE, Chukwurah E, Wu J, Gao Z, Zagore LL, Merrick WC, Trifunovic A, Hsieh AC, Valadkhan S, Zhang Y, Qi X, Jankowsky E, Topisirovic I, Licatalosi DD, Qian SB, Hatzoglou M. Adaptive translational pausing is a hallmark of the cellular response to severe environmental stress. Mol Cell. 2021 Oct 21;81(20):4191-4208.e8. doi: 10.1016/j.molcel.2021.09.029. PMID: 34686314; PMCID: PMC8559772.
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Adaptive translational pausing is a hallmark of the cellular response to severe environmental stress.

Molecular cell

Jobava R, Mao Y, Guan BJ, Hu D, Krokowski D, Chen CW, Shu XE, Chukwurah E, Wu J, Gao Z, Zagore LL, Merrick WC, Trifunovic A, Hsieh AC, Valadkhan S, Zhang Y, Qi X, Jankowsky E, Topisirovic I, Licatalosi DD, Qian SB, Hatzoglou M.
PMID: 34686314
Mol Cell. 2021 Oct 21;81(20):4191-4208.e8. doi: 10.1016/j.molcel.2021.09.029.

To survive, mammalian cells must adapt to environmental challenges. While the cellular response to mild stress has been widely studied, how cells respond to severe stress remains unclear. We show here that under severe hyperosmotic stress, cells enter a...

Cite
Jobava R, Mao Y, Guan BJ, et al. Adaptive translational pausing is a hallmark of the cellular response to severe environmental stress. Mol Cell. 2021;81(20):4191-4208.e8doi: 10.1016/j.molcel.2021.09.029.
Jobava, R., Mao, Y., Guan, B. J., Hu, D., Krokowski, D., Chen, C. W., Shu, X. E., Chukwurah, E., Wu, J., Gao, Z., Zagore, L. L., Merrick, W. C., Trifunovic, A., Hsieh, A. C., Valadkhan, S., Zhang, Y., Qi, X., Jankowsky, E., Topisirovic, I., Licatalosi, D. D., Qian, S. B., & Hatzoglou, M. (2021). Adaptive translational pausing is a hallmark of the cellular response to severe environmental stress. Molecular cell, 81(20), 4191-4208.e8. https://doi.org/10.1016/j.molcel.2021.09.029
Jobava, Raul, et al. "Adaptive translational pausing is a hallmark of the cellular response to severe environmental stress." Molecular cell vol. 81,20 (2021): 4191-4208.e8. doi: https://doi.org/10.1016/j.molcel.2021.09.029
Jobava R, Mao Y, Guan BJ, Hu D, Krokowski D, Chen CW, Shu XE, Chukwurah E, Wu J, Gao Z, Zagore LL, Merrick WC, Trifunovic A, Hsieh AC, Valadkhan S, Zhang Y, Qi X, Jankowsky E, Topisirovic I, Licatalosi DD, Qian SB, Hatzoglou M. Adaptive translational pausing is a hallmark of the cellular response to severe environmental stress. Mol Cell. 2021 Oct 21;81(20):4191-4208.e8. doi: 10.1016/j.molcel.2021.09.029. PMID: 34686314; PMCID: PMC8559772.
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Adaptation to mitochondrial stress requires CHOP-directed tuning of ISR.

Science advances

Kaspar S, Oertlin C, Szczepanowska K, Kukat A, Senft K, Lucas C, Brodesser S, Hatzoglou M, Larsson O, Topisirovic I, Trifunovic A.
PMID: 34039602
Sci Adv. 2021 May 26;7(22). doi: 10.1126/sciadv.abf0971. Print 2021 May.

In response to disturbed mitochondrial gene expression and protein synthesis, an adaptive transcriptional response sharing a signature of the integrated stress response (ISR) is activated. We report an intricate interplay between three transcription factors regulating the mitochondrial stress response:...

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Kaspar S, Oertlin C, Szczepanowska K, et al. Adaptation to mitochondrial stress requires CHOP-directed tuning of ISR. Sci Adv. 2021;7(22)doi: 10.1126/sciadv.abf0971.
Kaspar, S., Oertlin, C., Szczepanowska, K., Kukat, A., Senft, K., Lucas, C., Brodesser, S., Hatzoglou, M., Larsson, O., Topisirovic, I., & Trifunovic, A. (2021). Adaptation to mitochondrial stress requires CHOP-directed tuning of ISR. Science advances, 7(22), . https://doi.org/10.1126/sciadv.abf0971
Kaspar, Sophie, et al. "Adaptation to mitochondrial stress requires CHOP-directed tuning of ISR." Science advances vol. 7,22 (2021). doi: https://doi.org/10.1126/sciadv.abf0971
Kaspar S, Oertlin C, Szczepanowska K, Kukat A, Senft K, Lucas C, Brodesser S, Hatzoglou M, Larsson O, Topisirovic I, Trifunovic A. Adaptation to mitochondrial stress requires CHOP-directed tuning of ISR. Sci Adv. 2021 May 26;7(22). doi: 10.1126/sciadv.abf0971. Print 2021 May. PMID: 34039602; PMCID: PMC8153728.
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Translational control by the eukaryotic ribosome.

Cell

Topisirovic I, Sonenberg N.
PMID: 21529706
Cell. 2011 Apr 29;145(3):333-4. doi: 10.1016/j.cell.2011.04.006.

The ribosome plays a universally conserved role in catalyzing protein synthesis. Kondrashov et al. (2011) now provide evidence that the loss of function of ribosomal protein L38 in mice leads to a selective reduction in the translation of Hox...

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Topisirovic I, Sonenberg N. Translational control by the eukaryotic ribosome. Cell. 2011;145(3):333-4doi: 10.1016/j.cell.2011.04.006.
Topisirovic, I., & Sonenberg, N. (2011). Translational control by the eukaryotic ribosome. Cell, 145(3), 333-4. https://doi.org/10.1016/j.cell.2011.04.006
Topisirovic, Ivan, and Sonenberg, Nahum. "Translational control by the eukaryotic ribosome." Cell vol. 145,3 (2011): 333-4. doi: https://doi.org/10.1016/j.cell.2011.04.006
Topisirovic I, Sonenberg N. Translational control by the eukaryotic ribosome. Cell. 2011 Apr 29;145(3):333-4. doi: 10.1016/j.cell.2011.04.006. PMID: 21529706.
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Co-translational mechanisms of quality control of newly synthesized polypeptides.

Translation (Austin, Tex.)

Gandin V, Topisirovic I.
PMID: 26779401
Translation (Austin). 2014 Feb 13;2(1):e28109. doi: 10.4161/trla.28109. eCollection 2014.

During protein synthesis, nascent polypeptides emerge from ribosomes to fold into functional proteins. Misfolding of newly synthesized polypeptides (NSPs) at this stage leads to their aggregation. These misfolded NSPs must be expediently cleared to circumvent the deleterious effects of...

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Gandin V, Topisirovic I. Co-translational mechanisms of quality control of newly synthesized polypeptides. Translation (Austin). 2014;2(1):e28109doi: 10.4161/trla.28109.
Gandin, V., & Topisirovic, I. (2014). Co-translational mechanisms of quality control of newly synthesized polypeptides. Translation (Austin, Tex.), 2(1), e28109. https://doi.org/10.4161/trla.28109
Gandin, Valentina, and Topisirovic, Ivan. "Co-translational mechanisms of quality control of newly synthesized polypeptides." Translation (Austin, Tex.) vol. 2,1 (2014): e28109. doi: https://doi.org/10.4161/trla.28109
Gandin V, Topisirovic I. Co-translational mechanisms of quality control of newly synthesized polypeptides. Translation (Austin). 2014 Feb 13;2(1):e28109. doi: 10.4161/trla.28109. eCollection 2014. PMID: 26779401; PMCID: PMC4705825.
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