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Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation

STEM and diversity

Li F, Matny O, Sperschneider J, Upadhyaya NM.
GSID: X7M0XwwbrCMJ
F Li, NM Upadhyaya, J Sperschneider, O Matny… - Nature …, 2019 - nature.com

… diversity is crucial for the evolution of new traits, with mutation and sexual recombination as the main drivers of diversity … contributing to genetic diversity in asexual populations has been …

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Li, F., Upadhyaya, N. M., Sperschneider, J., Matny, O., Nguyen-Phuc, H., Mago, R., ... & Figueroa, M. (2019). Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation. Nature communications, 10(1), 1-15.
Li, Feng, et al. "Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation." Nature communications 10.1 (2019): 1-15.
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Changing the Game: Using Integrative Genomics to Probe Virulence Mechanisms of the Stem Rust Pathogen Puccinia graminis f. sp. tritici

STEM and diversify

Sperschneider J, Upadhyaya NM.
GSID: cTVt1kQDHkgJ
M Figueroa, NM Upadhyaya, J Sperschneider… - Frontiers in Plant …, 2016 - frontiersin.org

… stem … diversify sources of resistance with a broader focus beyond the Ug99 lineage, but also to ensure that multiple Sr genes are deployed in combination to guard against future stem …

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Figueroa, M., Upadhyaya, N. M., Sperschneider, J., Park, R. F., Szabo, L. J., Steffenson, B., ... & Dodds, P. N. (2016). Changing the game: using integrative genomics to probe virulence mechanisms of the stem rust pathogen Puccinia graminis f. sp. tritici. Frontiers in Plant Science, 7, 205.
Figueroa, Melania, et al. "Changing the game: using integrative genomics to probe virulence mechanisms of the stem rust pathogen Puccinia graminis f. sp. tritici." Frontiers in Plant Science 7 (2016): 205.
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Sinonasal inverted papilloma: A case report and mini review of histopathological features.

Journal of oral and maxillofacial pathology : JOMFP

Khandekar S, Dive A, Mishra R, Upadhyaya N.
PMID: 26980974
J Oral Maxillofac Pathol. 2015 Sep-Dec;19(3):405. doi: 10.4103/0973-029X.174644.

Inverted papilloma is a benign epithelial growth in the underlying stroma of the nasal cavity and paranasal sinuses. The pathogenesis of this lesion remains unclear although allergy, chronic sinusitis and viral infections have been suggested as possible causes. The...

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Khandekar S, Dive A, Mishra R, et al. Sinonasal inverted papilloma: A case report and mini review of histopathological features. J Oral Maxillofac Pathol. 2015;19(3):405doi: 10.4103/0973-029X.174644.
Khandekar, S., Dive, A., Mishra, R., & Upadhyaya, N. (2015). Sinonasal inverted papilloma: A case report and mini review of histopathological features. Journal of oral and maxillofacial pathology : JOMFP, 19(3), 405. https://doi.org/10.4103/0973-029X.174644
Khandekar, Shubhangi, et al. "Sinonasal inverted papilloma: A case report and mini review of histopathological features." Journal of oral and maxillofacial pathology : JOMFP vol. 19,3 (2015): 405. doi: https://doi.org/10.4103/0973-029X.174644
Khandekar S, Dive A, Mishra R, Upadhyaya N. Sinonasal inverted papilloma: A case report and mini review of histopathological features. J Oral Maxillofac Pathol. 2015 Sep-Dec;19(3):405. doi: 10.4103/0973-029X.174644. PMID: 26980974; PMCID: PMC4774299.
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Harmonic versus LigaSure hemostasis technique in thyroid surgery: A meta-analysis.

Biomedical reports

Upadhyaya A, Hu T, Meng Z, Li X, He X, Tian W, Jia Q, Tan J.
PMID: 27446546
Biomed Rep. 2016 Aug;5(2):221-227. doi: 10.3892/br.2016.691. Epub 2016 May 26.

Harmonic scalpel and LigaSure vessel sealing systems have been suggested as options for saving surgical time and reducing postoperative complications. The aim of the present meta-analysis was to compare surgical time, postoperative complications and other parameters between them in...

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Upadhyaya A, Hu T, Meng Z, et al. Harmonic versus LigaSure hemostasis technique in thyroid surgery: A meta-analysis. Biomed Rep. 2016;5(2):221-227doi: 10.3892/br.2016.691.
Upadhyaya, A., Hu, T., Meng, Z., Li, X., He, X., Tian, W., Jia, Q., & Tan, J. (2016). Harmonic versus LigaSure hemostasis technique in thyroid surgery: A meta-analysis. Biomedical reports, 5(2), 221-227. https://doi.org/10.3892/br.2016.691
Upadhyaya, Arun, et al. "Harmonic versus LigaSure hemostasis technique in thyroid surgery: A meta-analysis." Biomedical reports vol. 5,2 (2016): 221-227. doi: https://doi.org/10.3892/br.2016.691
Upadhyaya A, Hu T, Meng Z, Li X, He X, Tian W, Jia Q, Tan J. Harmonic versus LigaSure hemostasis technique in thyroid surgery: A meta-analysis. Biomed Rep. 2016 Aug;5(2):221-227. doi: 10.3892/br.2016.691. Epub 2016 May 26. PMID: 27446546; PMCID: PMC4950612.
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An evidence-based conceptual framework of healthy cooking.

Preventive medicine reports

Raber M, Chandra J, Upadhyaya M, Schick V, Strong LL, Durand C, Sharma S.
PMID: 27413657
Prev Med Rep. 2016 May 17;4:23-8. doi: 10.1016/j.pmedr.2016.05.004. eCollection 2016 Dec.

Eating out of the home has been positively associated with body weight, obesity, and poor diet quality. While cooking at home has declined steadily over the last several decades, the benefits of home cooking have gained attention in recent...

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Raber M, Chandra J, Upadhyaya M, et al. An evidence-based conceptual framework of healthy cooking. Prev Med Rep. 2016;4:23-8doi: 10.1016/j.pmedr.2016.05.004.
Raber, M., Chandra, J., Upadhyaya, M., Schick, V., Strong, L. L., Durand, C., & Sharma, S. (2016). An evidence-based conceptual framework of healthy cooking. Preventive medicine reports, 423-8. https://doi.org/10.1016/j.pmedr.2016.05.004
Raber, Margaret, et al. "An evidence-based conceptual framework of healthy cooking." Preventive medicine reports vol. 4 (2016): 23-8. doi: https://doi.org/10.1016/j.pmedr.2016.05.004
Raber M, Chandra J, Upadhyaya M, Schick V, Strong LL, Durand C, Sharma S. An evidence-based conceptual framework of healthy cooking. Prev Med Rep. 2016 May 17;4:23-8. doi: 10.1016/j.pmedr.2016.05.004. eCollection 2016 Dec. PMID: 27413657; PMCID: PMC4929050.
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Narrow-linewidth broadly tunable Yb-doped Q-switched fiber laser using multimode interference filter.

Applied optics

Chakravarty U, Mukhopadhyay PK, Kuruvilla A, Upadhyaya BN, Bindra KS.
PMID: 28463269
Appl Opt. 2017 May 01;56(13):3783-3788. doi: 10.1364/AO.56.003783.

A narrow-linewidth broadly tunable Yb-doped Q-switched fiber laser using an acousto-optic modulator and multimode interference filter (MMIF) in the linear bulk cavity resonator and an all-fiber ring cavity resonator has been demonstrated. Insertion of an MMIF in the linear...

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Chakravarty U, Mukhopadhyay PK, Kuruvilla A, et al. Narrow-linewidth broadly tunable Yb-doped Q-switched fiber laser using multimode interference filter. Appl Opt. 2017;56(13):3783-3788doi: 10.1364/AO.56.003783.
Chakravarty, U., Mukhopadhyay, P. K., Kuruvilla, A., Upadhyaya, B. N., & Bindra, K. S. (2017). Narrow-linewidth broadly tunable Yb-doped Q-switched fiber laser using multimode interference filter. Applied optics, 56(13), 3783-3788. https://doi.org/10.1364/AO.56.003783
Chakravarty, Usha, et al. "Narrow-linewidth broadly tunable Yb-doped Q-switched fiber laser using multimode interference filter." Applied optics vol. 56,13 (2017): 3783-3788. doi: https://doi.org/10.1364/AO.56.003783
Chakravarty U, Mukhopadhyay PK, Kuruvilla A, Upadhyaya BN, Bindra KS. Narrow-linewidth broadly tunable Yb-doped Q-switched fiber laser using multimode interference filter. Appl Opt. 2017 May 01;56(13):3783-3788. doi: 10.1364/AO.56.003783. PMID: 28463269.
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EcoTILLING-Based Association Mapping Efficiently Delineates Functionally Relevant Natural Allelic Variants of Candidate Genes Governing Agronomic Traits in Chickpea.

Frontiers in plant science

Bajaj D, Srivastava R, Nath M, Tripathi S, Bharadwaj C, Upadhyaya HD, Tyagi AK, Parida SK.
PMID: 27148286
Front Plant Sci. 2016 Apr 19;7:450. doi: 10.3389/fpls.2016.00450. eCollection 2016.

The large-scale mining and high-throughput genotyping of novel gene-based allelic variants in natural mapping population are essential for association mapping to identify functionally relevant molecular tags governing useful agronomic traits in chickpea. The present study employs an alternative time-saving,...

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Bajaj D, Srivastava R, Nath M, et al. EcoTILLING-Based Association Mapping Efficiently Delineates Functionally Relevant Natural Allelic Variants of Candidate Genes Governing Agronomic Traits in Chickpea. Front Plant Sci. 2016;7:450doi: 10.3389/fpls.2016.00450.
Bajaj, D., Srivastava, R., Nath, M., Tripathi, S., Bharadwaj, C., Upadhyaya, H. D., Tyagi, A. K., & Parida, S. K. (2016). EcoTILLING-Based Association Mapping Efficiently Delineates Functionally Relevant Natural Allelic Variants of Candidate Genes Governing Agronomic Traits in Chickpea. Frontiers in plant science, 7450. https://doi.org/10.3389/fpls.2016.00450
Bajaj, Deepak, et al. "EcoTILLING-Based Association Mapping Efficiently Delineates Functionally Relevant Natural Allelic Variants of Candidate Genes Governing Agronomic Traits in Chickpea." Frontiers in plant science vol. 7 (2016): 450. doi: https://doi.org/10.3389/fpls.2016.00450
Bajaj D, Srivastava R, Nath M, Tripathi S, Bharadwaj C, Upadhyaya HD, Tyagi AK, Parida SK. EcoTILLING-Based Association Mapping Efficiently Delineates Functionally Relevant Natural Allelic Variants of Candidate Genes Governing Agronomic Traits in Chickpea. Front Plant Sci. 2016 Apr 19;7:450. doi: 10.3389/fpls.2016.00450. eCollection 2016. PMID: 27148286; PMCID: PMC4835497.
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An ab initio study of microsolvation of LiF in water: structures and properties of LiF-Wn, n = 1-9 complexes.

Journal of computational chemistry

Upadhyay DM, Mishra PC.
PMID: 12827675
J Comput Chem. 2003 Aug;24(11):1336-47. doi: 10.1002/jcc.10285.

Geometries of clusters of water molecules (W(n)) and those of the LiF-W(n) (n = 1-9) complexes were optimized using the B3LYP/6-31+G** method. Geometries of the complexes up to n = 7 were also optimized using the MP2/6-31+G** approach. Only...

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Upadhyay DM, Mishra PC. An ab initio study of microsolvation of LiF in water: structures and properties of LiF-Wn, n = 1-9 complexes. J Comput Chem. 2003;24(11):1336-47doi: 10.1002/jcc.10285.
Upadhyay, D. M., & Mishra, P. C. (2003). An ab initio study of microsolvation of LiF in water: structures and properties of LiF-Wn, n = 1-9 complexes. Journal of computational chemistry, 24(11), 1336-47. https://doi.org/10.1002/jcc.10285
Upadhyay, D M, and Mishra, P C. "An ab initio study of microsolvation of LiF in water: structures and properties of LiF-Wn, n = 1-9 complexes." Journal of computational chemistry vol. 24,11 (2003): 1336-47. doi: https://doi.org/10.1002/jcc.10285
Upadhyay DM, Mishra PC. An ab initio study of microsolvation of LiF in water: structures and properties of LiF-Wn, n = 1-9 complexes. J Comput Chem. 2003 Aug;24(11):1336-47. doi: 10.1002/jcc.10285. PMID: 12827675.
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Dissociation dynamics of thiolactic acid at 193 nm: detection of the nascent OH product by laser-induced fluorescence.

The Journal of chemical physics

Pushpa KK, Upadhyaya HP, Kumar A, Naik PD, Bajaj P, Mittal JP.
PMID: 15267595
J Chem Phys. 2004 Apr 15;120(15):6964-72. doi: 10.1063/1.1667878.

Electronically excited thiolactic acid (2-mercaptopropionic acid), H(3)C-CH(SH)-COOH, undergoes the C-OH bond cleavage on excitation to the S(2) state at 193 nm, generating the primary product OH (v,J), which is detected by laser-induced fluorescence technique in a collisionless condition of...

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Pushpa KK, Upadhyaya HP, Kumar A, et al. Dissociation dynamics of thiolactic acid at 193 nm: detection of the nascent OH product by laser-induced fluorescence. J Chem Phys. 2004;120(15):6964-72doi: 10.1063/1.1667878.
Pushpa, K. K., Upadhyaya, H. P., Kumar, A., Naik, P. D., Bajaj, P., & Mittal, J. P. (2004). Dissociation dynamics of thiolactic acid at 193 nm: detection of the nascent OH product by laser-induced fluorescence. The Journal of chemical physics, 120(15), 6964-72. https://doi.org/10.1063/1.1667878
Pushpa, Kumbil K, et al. "Dissociation dynamics of thiolactic acid at 193 nm: detection of the nascent OH product by laser-induced fluorescence." The Journal of chemical physics vol. 120,15 (2004): 6964-72. doi: https://doi.org/10.1063/1.1667878
Pushpa KK, Upadhyaya HP, Kumar A, Naik PD, Bajaj P, Mittal JP. Dissociation dynamics of thiolactic acid at 193 nm: detection of the nascent OH product by laser-induced fluorescence. J Chem Phys. 2004 Apr 15;120(15):6964-72. doi: 10.1063/1.1667878. PMID: 15267595.
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Mode of Dinitroaniline Herbicide Action: II. CHARACTERIZATION OF [C]ORYZALIN UPTAKE AND BINDING.

Plant physiology

Upadhyaya MK, Noodén LD.
PMID: 16661574
Plant Physiol. 1980 Dec;66(6):1048-52. doi: 10.1104/pp.66.6.1048.

The intracellular binding of dinitroaniline herbicides was studied in order to analyze the mechanism of their colchicine-like action. When corn root apices (5 millimeters) are incubated in [(14)C]oryzalin (a dinitroaniline herbicide), the (14)C is taken up rapidly, reaching a...

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Upadhyaya MK, Noodén LD. Mode of Dinitroaniline Herbicide Action: II. CHARACTERIZATION OF [C]ORYZALIN UPTAKE AND BINDING. Plant Physiol. 1980;66(6):1048-52doi: 10.1104/pp.66.6.1048.
Upadhyaya, M. K., & Noodén, L. D. (1980). Mode of Dinitroaniline Herbicide Action: II. CHARACTERIZATION OF [C]ORYZALIN UPTAKE AND BINDING. Plant physiology, 66(6), 1048-52. https://doi.org/10.1104/pp.66.6.1048
Upadhyaya, M K, and Noodén, L D. "Mode of Dinitroaniline Herbicide Action: II. CHARACTERIZATION OF [C]ORYZALIN UPTAKE AND BINDING." Plant physiology vol. 66,6 (1980): 1048-52. doi: https://doi.org/10.1104/pp.66.6.1048
Upadhyaya MK, Noodén LD. Mode of Dinitroaniline Herbicide Action: II. CHARACTERIZATION OF [C]ORYZALIN UPTAKE AND BINDING. Plant Physiol. 1980 Dec;66(6):1048-52. doi: 10.1104/pp.66.6.1048. PMID: 16661574; PMCID: PMC440787.
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Theoretical and experimental studies of the reactions between hyperthermal O(3P) and graphite: graphene-based direct dynamics and beam-surface scattering approaches.

The journal of physical chemistry. A

Paci JT, Upadhyaya HP, Zhang J, Schatz GC, Minton TK.
PMID: 19301890
J Phys Chem A. 2009 Apr 23;113(16):4677-85. doi: 10.1021/jp9000412.

Beam-surface scattering experiments and theoretical direct dynamics based on density functional theory calculations are used to investigate hyperthermal collisions between O((3)P) and highly oriented pyrolytic graphite (HOPG). The simulations suggest that the HOPG surface becomes functionalized with epoxide groups....

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Paci JT, Upadhyaya HP, Zhang J, et al. Theoretical and experimental studies of the reactions between hyperthermal O(3P) and graphite: graphene-based direct dynamics and beam-surface scattering approaches. J Phys Chem A. 2009;113(16):4677-85doi: 10.1021/jp9000412.
Paci, J. T., Upadhyaya, H. P., Zhang, J., Schatz, G. C., & Minton, T. K. (2009). Theoretical and experimental studies of the reactions between hyperthermal O(3P) and graphite: graphene-based direct dynamics and beam-surface scattering approaches. The journal of physical chemistry. A, 113(16), 4677-85. https://doi.org/10.1021/jp9000412
Paci, Jeffrey T, et al. "Theoretical and experimental studies of the reactions between hyperthermal O(3P) and graphite: graphene-based direct dynamics and beam-surface scattering approaches." The journal of physical chemistry. A vol. 113,16 (2009): 4677-85. doi: https://doi.org/10.1021/jp9000412
Paci JT, Upadhyaya HP, Zhang J, Schatz GC, Minton TK. Theoretical and experimental studies of the reactions between hyperthermal O(3P) and graphite: graphene-based direct dynamics and beam-surface scattering approaches. J Phys Chem A. 2009 Apr 23;113(16):4677-85. doi: 10.1021/jp9000412. PMID: 19301890.
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Photodissociation dynamics of phosphorus trichloride (PCl3) at 235 nm using resonance enhanced multiphoton ionization (REMPI) with time-of-flight (TOF) mass spectrometry.

The journal of physical chemistry. A

Upadhyaya HP, Saha A, Kumar A, Bandyopadhyay T, Naik PD, Bajaj PN.
PMID: 20373808
J Phys Chem A. 2010 Apr 29;114(16):5271-8. doi: 10.1021/jp100538u.

The photodissociation dynamics of phosphorus trichloride (PCl(3)) has been studied in a supersonic beam by resonance enhanced multiphoton ionization (REMPI), using time-of-flight (TOF) mass spectrometry. The study is focused on the nascent state of the primary chlorine atom, formed...

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Upadhyaya HP, Saha A, Kumar A, et al. Photodissociation dynamics of phosphorus trichloride (PCl3) at 235 nm using resonance enhanced multiphoton ionization (REMPI) with time-of-flight (TOF) mass spectrometry. J Phys Chem A. 2010;114(16):5271-8doi: 10.1021/jp100538u.
Upadhyaya, H. P., Saha, A., Kumar, A., Bandyopadhyay, T., Naik, P. D., & Bajaj, P. N. (2010). Photodissociation dynamics of phosphorus trichloride (PCl3) at 235 nm using resonance enhanced multiphoton ionization (REMPI) with time-of-flight (TOF) mass spectrometry. The journal of physical chemistry. A, 114(16), 5271-8. https://doi.org/10.1021/jp100538u
Upadhyaya, Hari P, et al. "Photodissociation dynamics of phosphorus trichloride (PCl3) at 235 nm using resonance enhanced multiphoton ionization (REMPI) with time-of-flight (TOF) mass spectrometry." The journal of physical chemistry. A vol. 114,16 (2010): 5271-8. doi: https://doi.org/10.1021/jp100538u
Upadhyaya HP, Saha A, Kumar A, Bandyopadhyay T, Naik PD, Bajaj PN. Photodissociation dynamics of phosphorus trichloride (PCl3) at 235 nm using resonance enhanced multiphoton ionization (REMPI) with time-of-flight (TOF) mass spectrometry. J Phys Chem A. 2010 Apr 29;114(16):5271-8. doi: 10.1021/jp100538u. PMID: 20373808.
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Showing 1 to 12 of 259 entries