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NAPPN: Who we are, where we are going, and Why You Should Join Us!

EPSCoR Research Infrastructure Improvement Program AND Program Evaluation

Clarke J, Fahlgren N.
GSID: tVRwWHTl1hAJ
AA Carroll, J Clarke, N Fahlgren… - The Plant Phenome …, 2019 - Wiley Online Library

Core Ideas NAPPN is the North American Plant Phenotyping Network. We are a scientific community focused on high‐throughput plant phenomics. We promote cross‐disciplinary communication among the many fields that contribute to phenomics research. The area of high‐throughput plant phenomics...

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CARROLL, April Agee, CLARKE, Jennifer, FAHLGREN, Noah, et al. NAPPN: Who we are, where we are going, and Why You Should Join Us!. The Plant Phenome Journal, 2019, vol. 2, no 1, p. 1-4.
Carroll, A. A., Clarke, J., Fahlgren, N., Gehan, M. A., Lawrence‐Dill, C. J., & Lorence, A. (2019). NAPPN: Who we are, where we are going, and Why You Should Join Us!. The Plant Phenome Journal, 2(1), 1-4.
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Evolution and Functional Diversification of MIRNA Genes

STEM and diversification

Carrington JC, Cuperus JT, Fahlgren N.
GSID: TUHCYxSJfRMJ
JT Cuperus, N Fahlgren, JC Carrington - The Plant Cell, 2011 - academic.oup.com

… An average animal pri-miRNA contains a 33-bp stem with a terminal loop and two single-stranded flanking regions (Winter et al., 2009). The double-stranded stem and flanking regions …

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Cuperus, J. T., Fahlgren, N., & Carrington, J. C. (2011). Evolution and functional diversification of MIRNA genes. The Plant Cell, 23(2), 431-442.
Cuperus, Josh T., Noah Fahlgren, and James C. Carrington. "Evolution and functional diversification of MIRNA genes." The Plant Cell 23.2 (2011): 431-442.
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Genetics and epidemiology of hypothyroidism and symmetrical onychomadesis in the Gordon setter and the English setter.

Canine genetics and epidemiology

Ziener ML, Dahlgren S, Thoresen SI, Lingaas F.
PMID: 26401340
Canine Genet Epidemiol. 2015 Aug 21;2:12. doi: 10.1186/s40575-015-0025-6. eCollection 2015.

BACKGROUND: Hypothyroidism is one of the most common endocrine disorders, whereas symmetrical onychomadesis is a rare claw disease in the general dog population. The aims of this study were to estimate the prevalence of hypothyroidism and symmetrical onychomadesis in...

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Ziener ML, Dahlgren S, Thoresen SI, et al. Genetics and epidemiology of hypothyroidism and symmetrical onychomadesis in the Gordon setter and the English setter. Canine Genet Epidemiol. 2015;2:12doi: 10.1186/s40575-015-0025-6.
Ziener, M. L., Dahlgren, S., Thoresen, S. I., & Lingaas, F. (2015). Genetics and epidemiology of hypothyroidism and symmetrical onychomadesis in the Gordon setter and the English setter. Canine genetics and epidemiology, 212. https://doi.org/10.1186/s40575-015-0025-6
Ziener, Martine Lund, et al. "Genetics and epidemiology of hypothyroidism and symmetrical onychomadesis in the Gordon setter and the English setter." Canine genetics and epidemiology vol. 2 (2015): 12. doi: https://doi.org/10.1186/s40575-015-0025-6
Ziener ML, Dahlgren S, Thoresen SI, Lingaas F. Genetics and epidemiology of hypothyroidism and symmetrical onychomadesis in the Gordon setter and the English setter. Canine Genet Epidemiol. 2015 Aug 21;2:12. doi: 10.1186/s40575-015-0025-6. eCollection 2015. PMID: 26401340; PMCID: PMC4579390.
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Calculation of Derivative Thermodynamic Hydration and Aqueous Partial Molar Properties of Ions Based on Atomistic Simulations.

Journal of chemical theory and computation

Dahlgren B, Reif MM, Hünenberger PH, Hansen N.
PMID: 26593002
J Chem Theory Comput. 2012 Oct 09;8(10):3542-64. doi: 10.1021/ct300260q. Epub 2012 Jul 19.

The raw ionic solvation free energies calculated on the basis of atomistic (explicit-solvent) simulations are extremely sensitive to the boundary conditions and treatment of electrostatic interactions used during these simulations. However, as shown recently [Kastenholz, M. A.; Hünenberger, P....

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Dahlgren B, Reif MM, Hünenberger PH, et al. Calculation of Derivative Thermodynamic Hydration and Aqueous Partial Molar Properties of Ions Based on Atomistic Simulations. J Chem Theory Comput. 2012;8(10):3542-64doi: 10.1021/ct300260q.
Dahlgren, B., Reif, M. M., Hünenberger, P. H., & Hansen, N. (2012). Calculation of Derivative Thermodynamic Hydration and Aqueous Partial Molar Properties of Ions Based on Atomistic Simulations. Journal of chemical theory and computation, 8(10), 3542-64. https://doi.org/10.1021/ct300260q
Dahlgren, Björn, et al. "Calculation of Derivative Thermodynamic Hydration and Aqueous Partial Molar Properties of Ions Based on Atomistic Simulations." Journal of chemical theory and computation vol. 8,10 (2012): 3542-64. doi: https://doi.org/10.1021/ct300260q
Dahlgren B, Reif MM, Hünenberger PH, Hansen N. Calculation of Derivative Thermodynamic Hydration and Aqueous Partial Molar Properties of Ions Based on Atomistic Simulations. J Chem Theory Comput. 2012 Oct 09;8(10):3542-64. doi: 10.1021/ct300260q. Epub 2012 Jul 19. PMID: 26593002.
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Different thresholds of tissue-specific dose-responses to growth hormone in short prepubertal children.

BMC endocrine disorders

Decker R, Nygren A, Kriström B, Nierop AF, Gustafsson J, Albertsson-Wikland K, Dahlgren J.
PMID: 23116291
BMC Endocr Disord. 2012 Nov 01;12:26. doi: 10.1186/1472-6823-12-26.

BACKGROUND: In addition to stimulating linear growth in children, growth hormone (GH) influences metabolism and body composition. These effects should be considered when individualizing GH treatment as dose-dependent changes in metabolic markers have been reported.HYPOTHESIS: There are different dose-dependent...

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Decker R, Nygren A, Kriström B, et al. Different thresholds of tissue-specific dose-responses to growth hormone in short prepubertal children. BMC Endocr Disord. 2012;12:26doi: 10.1186/1472-6823-12-26.
Decker, R., Nygren, A., Kriström, B., Nierop, A. F., Gustafsson, J., Albertsson-Wikland, K., & Dahlgren, J. (2012). Different thresholds of tissue-specific dose-responses to growth hormone in short prepubertal children. BMC endocrine disorders, 1226. https://doi.org/10.1186/1472-6823-12-26
Decker, Ralph, et al. "Different thresholds of tissue-specific dose-responses to growth hormone in short prepubertal children." BMC endocrine disorders vol. 12 (2012): 26. doi: https://doi.org/10.1186/1472-6823-12-26
Decker R, Nygren A, Kriström B, Nierop AF, Gustafsson J, Albertsson-Wikland K, Dahlgren J. Different thresholds of tissue-specific dose-responses to growth hormone in short prepubertal children. BMC Endocr Disord. 2012 Nov 01;12:26. doi: 10.1186/1472-6823-12-26. PMID: 23116291; PMCID: PMC3583138.
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An Investigation of the Accuracy of Different DFT Functionals on the Water Exchange Reaction in Hydrated Uranyl(VI) in the Ground State and the First Excited State.

Journal of chemical theory and computation

Wåhlin P, Danilo C, Vallet V, Réal F, Flament JP, Wahlgren U.
PMID: 26620931
J Chem Theory Comput. 2008 Apr;4(4):569-77. doi: 10.1021/ct700062x.

We discuss the accuracy of density functional theory (DFT) in the gas phase for the water-exchange reactions in the uranyl(VI) aqua ion taking place both in the electronic ground state and in the first excited state (the luminescent (3)Δg...

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Wåhlin P, Danilo C, Vallet V, et al. An Investigation of the Accuracy of Different DFT Functionals on the Water Exchange Reaction in Hydrated Uranyl(VI) in the Ground State and the First Excited State. J Chem Theory Comput. 2008;4(4):569-77doi: 10.1021/ct700062x.
Wåhlin, P., Danilo, C., Vallet, V., Réal, F., Flament, J. P., & Wahlgren, U. (2008). An Investigation of the Accuracy of Different DFT Functionals on the Water Exchange Reaction in Hydrated Uranyl(VI) in the Ground State and the First Excited State. Journal of chemical theory and computation, 4(4), 569-77. https://doi.org/10.1021/ct700062x
Wåhlin, Pernilla, et al. "An Investigation of the Accuracy of Different DFT Functionals on the Water Exchange Reaction in Hydrated Uranyl(VI) in the Ground State and the First Excited State." Journal of chemical theory and computation vol. 4,4 (2008): 569-77. doi: https://doi.org/10.1021/ct700062x
Wåhlin P, Danilo C, Vallet V, Réal F, Flament JP, Wahlgren U. An Investigation of the Accuracy of Different DFT Functionals on the Water Exchange Reaction in Hydrated Uranyl(VI) in the Ground State and the First Excited State. J Chem Theory Comput. 2008 Apr;4(4):569-77. doi: 10.1021/ct700062x. PMID: 26620931.
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Data on human neutrophil activation induced by pepducins with amino acid sequences derived from β2AR and CXCR4.

Data in brief

Holdfeldt A, Winther M, Gabl M, Dahlgren C, Forsman H.
PMID: 27366778
Data Brief. 2016 Jun 01;8:411-4. doi: 10.1016/j.dib.2016.05.065. eCollection 2016 Sep.

The data described here is related to the research article titled (Gabl et al., 2016) [1]. Pepducins with peptide sequence derived from one of the intracellular domains of a given G-protein coupled receptor (GPCR) can either activate or inhibit...

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Holdfeldt A, Winther M, Gabl M, et al. Data on human neutrophil activation induced by pepducins with amino acid sequences derived from β2AR and CXCR4. Data Brief. 2016;8:411-4doi: 10.1016/j.dib.2016.05.065.
Holdfeldt, A., Winther, M., Gabl, M., Dahlgren, C., & Forsman, H. (2016). Data on human neutrophil activation induced by pepducins with amino acid sequences derived from β2AR and CXCR4. Data in brief, 8411-4. https://doi.org/10.1016/j.dib.2016.05.065
Holdfeldt, André, et al. "Data on human neutrophil activation induced by pepducins with amino acid sequences derived from β2AR and CXCR4." Data in brief vol. 8 (2016): 411-4. doi: https://doi.org/10.1016/j.dib.2016.05.065
Holdfeldt A, Winther M, Gabl M, Dahlgren C, Forsman H. Data on human neutrophil activation induced by pepducins with amino acid sequences derived from β2AR and CXCR4. Data Brief. 2016 Jun 01;8:411-4. doi: 10.1016/j.dib.2016.05.065. eCollection 2016 Sep. PMID: 27366778; PMCID: PMC4910300.
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Design and Synthesis of Novel Arylketo-containing P1-P3 Linked Macro-cyclic BACE-1 Inhibitors.

The open medicinal chemistry journal

Sandgren V, Belda O, Kvarnström I, Lindberg J, Samuelsson B, Dahlgren A.
PMID: 25937848
Open Med Chem J. 2015 Mar 31;9:13-26. doi: 10.2174/1874104501509010013. eCollection 2015.

A series of arylketo-containing P1-P3 linked macrocyclic BACE-1 inhibitors were designed, synthesized, and compared with compounds with a previously known and extensively studied corresponding P2 isophthalamide moiety with the aim to improve on permeability whilst retaining the enzyme- and...

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Sandgren V, Belda O, Kvarnström I, et al. Design and Synthesis of Novel Arylketo-containing P1-P3 Linked Macro-cyclic BACE-1 Inhibitors. Open Med Chem J. 2015;9:13-26doi: 10.2174/1874104501509010013.
Sandgren, V., Belda, O., Kvarnström, I., Lindberg, J., Samuelsson, B., & Dahlgren, A. (2015). Design and Synthesis of Novel Arylketo-containing P1-P3 Linked Macro-cyclic BACE-1 Inhibitors. The open medicinal chemistry journal, 913-26. https://doi.org/10.2174/1874104501509010013
Sandgren, Veronica, et al. "Design and Synthesis of Novel Arylketo-containing P1-P3 Linked Macro-cyclic BACE-1 Inhibitors." The open medicinal chemistry journal vol. 9 (2015): 13-26. doi: https://doi.org/10.2174/1874104501509010013
Sandgren V, Belda O, Kvarnström I, Lindberg J, Samuelsson B, Dahlgren A. Design and Synthesis of Novel Arylketo-containing P1-P3 Linked Macro-cyclic BACE-1 Inhibitors. Open Med Chem J. 2015 Mar 31;9:13-26. doi: 10.2174/1874104501509010013. eCollection 2015. PMID: 25937848; PMCID: PMC4412958.
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Efficient equity-oriented strategies for health.

Bulletin of the World Health Organization

Dahlgren G.
PMID: 10686739
Bull World Health Organ. 2000;78(1):79-81.

No abstract available.

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Dahlgren G. Efficient equity-oriented strategies for health. Bull World Health Organ. 2000;78(1):79-81
Dahlgren, G. (2000). Efficient equity-oriented strategies for health. Bulletin of the World Health Organization, 78(1), 79-81.
Dahlgren. "Efficient equity-oriented strategies for health." Bulletin of the World Health Organization vol. 78,1 (2000): 79-81.
Dahlgren G. Efficient equity-oriented strategies for health. Bull World Health Organ. 2000;78(1):79-81. PMID: 10686739; PMCID: PMC2560598.
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Spin-orbit configuration interaction study of the electronic structure of the 5f (2) manifold of U(4+) and the 5f manifold of U(5+).

The Journal of chemical physics

Danilo C, Vallet V, Flament JP, Wahlgren U.
PMID: 18433212
J Chem Phys. 2008 Apr 21;128(15):154310. doi: 10.1063/1.2888560.

The energy levels of the 5f configuration of U(5+) and 5f(2) configuration of U(4+) have been calculated in a dressed effective Hamiltonian relativistic spin-orbit configuration interaction framework. Electron correlation is treated in the scalar relativistic scheme with either the...

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Danilo C, Vallet V, Flament JP, et al. Spin-orbit configuration interaction study of the electronic structure of the 5f (2) manifold of U(4+) and the 5f manifold of U(5+). J Chem Phys. 2008;128(15):154310doi: 10.1063/1.2888560.
Danilo, C., Vallet, V., Flament, J. P., & Wahlgren, U. (2008). Spin-orbit configuration interaction study of the electronic structure of the 5f (2) manifold of U(4+) and the 5f manifold of U(5+). The Journal of chemical physics, 128(15), 154310. https://doi.org/10.1063/1.2888560
Danilo, Cécile, et al. "Spin-orbit configuration interaction study of the electronic structure of the 5f (2) manifold of U(4+) and the 5f manifold of U(5+)." The Journal of chemical physics vol. 128,15 (2008): 154310. doi: https://doi.org/10.1063/1.2888560
Danilo C, Vallet V, Flament JP, Wahlgren U. Spin-orbit configuration interaction study of the electronic structure of the 5f (2) manifold of U(4+) and the 5f manifold of U(5+). J Chem Phys. 2008 Apr 21;128(15):154310. doi: 10.1063/1.2888560. PMID: 18433212.
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A SECOND METHOD OF CONTRACTION IN THE STRIATED MUSCLE OF SOME VERTEBRATE ANIMALS.

Science (New York, N.Y.)

Dahlgren U.
PMID: 17735365
Science. 1934 Mar 30;79(2048):300-1. doi: 10.1126/science.79.2048.300.

No abstract available.

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Dahlgren U. A SECOND METHOD OF CONTRACTION IN THE STRIATED MUSCLE OF SOME VERTEBRATE ANIMALS. Science. 1934;79(2048):300-1doi: 10.1126/science.79.2048.300.
Dahlgren, U. (1934). A SECOND METHOD OF CONTRACTION IN THE STRIATED MUSCLE OF SOME VERTEBRATE ANIMALS. Science (New York, N.Y.), 79(2048), 300-1. https://doi.org/10.1126/science.79.2048.300
Dahlgren, U. "A SECOND METHOD OF CONTRACTION IN THE STRIATED MUSCLE OF SOME VERTEBRATE ANIMALS." Science (New York, N.Y.) vol. 79,2048 (1934): 300-1. doi: https://doi.org/10.1126/science.79.2048.300
Dahlgren U. A SECOND METHOD OF CONTRACTION IN THE STRIATED MUSCLE OF SOME VERTEBRATE ANIMALS. Science. 1934 Mar 30;79(2048):300-1. doi: 10.1126/science.79.2048.300. PMID: 17735365.
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Purification and characterization of a pyruvated-mannose-specific xanthan lyase from heat-stable, salt-tolerant bacteria.

Applied and environmental microbiology

Ahlgren JA.
PMID: 16348550
Appl Environ Microbiol. 1991 Sep;57(9):2523-8. doi: 10.1128/aem.57.9.2523-2528.1991.

A xanthanase complex secreted by a consortium of heat-stable, salt-tolerant bacteria includes a lyase that specifically removes terminal pyruvated beta-d-mannose residues from the side chains of xanthan gum. The enzyme was purified to homogeneity from the culture broth following...

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Ahlgren JA. Purification and characterization of a pyruvated-mannose-specific xanthan lyase from heat-stable, salt-tolerant bacteria. Appl Environ Microbiol. 1991;57(9):2523-8doi: 10.1128/aem.57.9.2523-2528.1991.
Ahlgren, J. A. (1991). Purification and characterization of a pyruvated-mannose-specific xanthan lyase from heat-stable, salt-tolerant bacteria. Applied and environmental microbiology, 57(9), 2523-8. https://doi.org/10.1128/aem.57.9.2523-2528.1991
Ahlgren, J A. "Purification and characterization of a pyruvated-mannose-specific xanthan lyase from heat-stable, salt-tolerant bacteria." Applied and environmental microbiology vol. 57,9 (1991): 2523-8. doi: https://doi.org/10.1128/aem.57.9.2523-2528.1991
Ahlgren JA. Purification and characterization of a pyruvated-mannose-specific xanthan lyase from heat-stable, salt-tolerant bacteria. Appl Environ Microbiol. 1991 Sep;57(9):2523-8. doi: 10.1128/aem.57.9.2523-2528.1991. PMID: 16348550; PMCID: PMC183613.
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Showing 1 to 12 of 230 entries