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Showing 1 to 12 of 523 entries
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MrBUMP: an automated pipeline for molecular replacement

pipeline programs

Winn MD.
GSID: 5qw-tdlvosIJ
RM Keegan, MD Winn - Acta Crystallographica Section D: Biological …, 2008 - iucr.org

… to the core molecular-replacement programs. For routine molecular-replacement problems, the pipeline automates what a crystallographer might … Bioinformatics, 15, 87-88.] ), but the conclusions of such tests do not necessarily transfer to our particular usage of these programs....

Automated search-model discovery and preparation for structure solution by molecular replacement

pipeline programs

Winn MD.
GSID: ZwRwPznK04wJ
RM Keegan, MD Winn - Acta Crystallographica Section D: Biological …, 2007 - scripts.iucr.org

A novel automation pipeline for macromolecular structure solution by molecular replacement is described. There is a special emphasis on the discovery and preparation of a large …

AMPLE: a cluster-and-truncate approach to solve the crystal structures of small proteins using rapidly computed ab initio models

pipeline programs

Winn MD.
GSID: mQTluSAbkT8J
J Bibby, RM Keegan, O Mayans, MD Winn… - … Section D: Biological …, 2012 - scripts.iucr.org

Protein ab initio models predicted from sequence data alone can enable the elucidation of crystal structures by molecular replacement. However, the calculation of such ab initio …

Handbook of family diversity

diversity

Allen KR, Fine MA.
GSID: _516VDX99-8J
DH Demo, KR Allen, MA Fine - 2000 - psycnet.apa.org

This handbook provides a comprehensive discussion of several key dimensions where families differ: race, socioeconomic status, family structure, sexual orientation, and gender. It is designed to inform and broaden the debate among students, family scholars, practitioners, and …

Observation of the Doubly Charmed Baryon Ξ_{cc}^{++}.

Physical review letters

Aaij R, Adeva B, Adinolfi M, Ajaltouni Z, Akar S, Albrecht J, Alessio F, Alexander M, Alfonso Albero A, Ali S, Alkhazov G, Alvarez Cartelle P, Alves AA, Amato S, Amerio S, Amhis Y, An L, Anderlini L, Andreassi G, Andreotti M, Andrews JE, Appleby RB, Archilli F, d'Argent P, Arnau Romeu J, Artamonov A, Artuso M, Aslanides E, Auriemma G, Baalouch M, Babuschkin I, Bachmann S, Back JJ, Badalov A, Baesso C, Baker S, Balagura V, Baldini W, Baranov A, Barlow RJ, Barschel C, Barsuk S, Barter W, Baryshnikov F, Batozskaya V, Battista V, Bay A, Beaucourt L, Beddow J, Bedeschi F, Bediaga I, Beiter A, Bel LJ, Beliy N, Bellee V, Belloli N, Belous K, Belyaev I, Ben-Haim E, Bencivenni G, Benson S, Beranek S, Berezhnoy A, Bernet R, Berninghoff D, Bertholet E, Bertolin A, Betancourt C, Betti F, Bettler MO, van Beuzekom M, Bezshyiko I, Bifani S, Billoir P, Birnkraut A, Bitadze A, Bizzeti A, Bjoern MB, Blake T, Blanc F, Blouw J, Blusk S, Bocci V, Boettcher T, Bondar A, Bondar N, Bonivento W, Bordyuzhin I, Borgheresi A, Borghi S, Borisyak M, Borsato M, Borysova M, Bossu F, Boubdir M, Bowcock TJV, Bowen E, Bozzi C, Braun S, Britton T, Brodzicka J, Brundu D, Buchanan E, Burr C, Bursche A, Buytaert J, Byczynski W, Cadeddu S, Cai H, Calabrese R, Calladine R, Calvi M, Calvo Gomez M, Camboni A, Campana P, Campora Perez DH, Capriotti L, Carbone A, Carboni G, Cardinale R, Cardini A, Carniti P, Carson L, Carvalho Akiba K, Casse G, Cassina L, Castillo Garcia L, Cattaneo M, Cavallero G, Cenci R, Chamont D, Charles M, Charpentier P, Chatzikonstantinidis G, Chefdeville M, Chen S, Cheung SF, Chitic SG, Chobanova V, Chrzaszcz M, Chubykin A, Ciambrone P, Cid Vidal X, Ciezarek G, Clarke PEL, Clemencic M, Cliff HV, Closier J, Cogan J, Cogneras E, Cogoni V, Cojocariu L, Collins P, Colombo T, Comerma-Montells A, Contu A, Cook A, Coombs G, Coquereau S, Corti G, Corvo M, Costa Sobral CM, Couturier B, Cowan GA, Craik DC, Crocombe A, Cruz Torres M, Currie R, D'Ambrosio C, Da Cunha Marinho F, Dall'Occo E, Dalseno J, Davis A, De Aguiar Francisco O, De Capua S, De Cian M, De Miranda JM, De Paula L, De Serio M, De Simone P, Dean CT, Decamp D, Del Buono L, Dembinski HP, Demmer M, Dendek A, Derkach D, Deschamps O, Dettori F, Dey B, Di Canto A, Di Nezza P, Dijkstra H, Dordei F, Dorigo M, Dosil Suárez A, Douglas L, Dovbnya A, Dreimanis K, Dufour L, Dujany G, Durante P, Dzhelyadin R, Dziewiecki M, Dziurda A, Dzyuba A, Easo S, Ebert M, Egede U, Egorychev V, Eidelman S, Eisenhardt S, Eitschberger U, Ekelhof R, Eklund L, Ely S, Esen S, Evans HM, Evans T, Falabella A, Farley N, Farry S, Fay R, Fazzini D, Federici L, Ferguson D, Fernandez G, Fernandez Declara P, Fernandez Prieto A, Ferrari F, Ferreira Rodrigues F, Ferro-Luzzi M, Filippov S, Fini RA, Fiore M, Fiorini M, Firlej M, Fitzpatrick C, Fiutowski T, Fleuret F, Fohl K, Fontana M, Fontanelli F, Forshaw DC, Forty R, Franco Lima V, Frank M, Frei C, Fu J, Funk W, Furfaro E, Färber C, Gabriel E, Gallas Torreira A, Galli D, Gallorini S, Gambetta S, Gandelman M, Gandini P, Gao Y, Garcia Martin LM, García Pardiñas J, Garra Tico J, Garrido L, Garsed PJ, Gascon D, Gaspar C, Gavardi L, Gazzoni G, Gerick D, Gersabeck E, Gersabeck M, Gershon T, Ghez P, Gianì S, Gibson V, Girard OG, Giubega L, Gizdov K, Gligorov VV, Golubkov D, Golutvin A, Gomes A, Gorelov IV, Gotti C, Govorkova E, Grabowski JP, Graciani Diaz R, Granado Cardoso LA, Graugés E, Graverini E, Graziani G, Grecu A, Greim R, Griffith P, Grillo L, Gruber L, Gruberg Cazon BR, Grünberg O, Gushchin E, Guz Y, Gys T, Göbel C, Hadavizadeh T, Hadjivasiliou C, Haefeli G, Haen C, Haines SC, Hamilton B, Han X, Hancock T, Hansmann-Menzemer S, Harnew N, Harnew ST, Harrison J, Hasse C, Hatch M, He J, Hecker M, Heinicke K, Heister A, Hennessy K, Henrard P, Henry L, van Herwijnen E, Heß M, Hicheur A, Hill D, Hombach C, Hopchev PH, Huard ZC, Hulsbergen W, Humair T, Hushchyn M, Hutchcroft D, Ibis P, Idzik M, Ilten P, Jacobsson R, Jalocha J, Jans E, Jawahery A, Jiang F, John M, Johnson D, Jones CR, Joram C, Jost B, Jurik N, Kandybei S, Karacson M, Kariuki JM, Karodia S, Kazeev N, Kecke M, Kelsey M, Kenzie M, Ketel T, Khairullin E, Khanji B, Khurewathanakul C, Kirn T, Klaver S, Klimaszewski K, Klimkovich T, Koliiev S, Kolpin M, Komarov I, Kopecna R, Koppenburg P, Kosmyntseva A, Kotriakhova S, Kozeiha M, Kreps M, Krokovny P, Kruse F, Krzemien W, Kucewicz W, Kucharczyk M, Kudryavtsev V, Kuonen AK, Kurek K, Kvaratskheliya T, Lacarrere D, Lafferty G, Lai A, Lanfranchi G, Langenbruch C, Latham T, Lazzeroni C, Le Gac R, van Leerdam J, Leflat A, Lefrançois J, Lefèvre R, Lemaitre F, Lemos Cid E, Leroy O, Lesiak T, Leverington B, Li PR, Li T, Li Y, Li Z, Likhomanenko T, Lindner R, Lionetto F, Lisovskyi V, Liu X, Loh D, Loi A, Longstaff I, Lopes JH, Lucchesi D, Lucio Martinez M, Luo H, Lupato A, Luppi E, Lupton O, Lusiani A, Lyu X, Machefert F, Maciuc F, Macko V, Mackowiak P, Maddock B, Maddrell-Mander S, Maev O, Maguire K, Maisuzenko D, Majewski MW, Malde S, Malinin A, Maltsev T, Manca G, Mancinelli G, Manning P, Marangotto D, Maratas J, Marchand JF, Marconi U, Marin Benito C, Marinangeli M, Marino P, Marks J, Martellotti G, Martin M, Martinelli M, Martinez Santos D, Martinez Vidal F, Martins Tostes D, Massacrier LM, Massafferri A, Matev R, Mathad A, Mathe Z, Matteuzzi C, Mauri A, Maurice E, Maurin B, Mazurov A, McCann M, McNab A, McNulty R, Mead JV, Meadows B, Meaux C, Meier F, Meinert N, Melnychuk D, Merk M, Merli A, Michielin E, Milanes DA, Millard E, Minard MN, Minzoni L, Mitzel DS, Mogini A, Molina Rodriguez J, Mombacher T, Monroy IA, Monteil S, Morandin M, Morello MJ, Morgunova O, Moron J, Morris AB, Mountain R, Muheim F, Mulder M, Müller D, Müller J, Müller K, Müller V, Naik P, Nakada T, Nandakumar R, Nandi A, Nasteva I, Needham M, Neri N, Neubert S, Neufeld N, Neuner M, Nguyen TD, Nguyen-Mau C, Nieswand S, Niet R, Nikitin N, Nikodem T, Nogay A, O'Hanlon DP, Oblakowska-Mucha A, Obraztsov V, Ogilvy S, Oldeman R, Onderwater CJG, Ossowska A, Otalora Goicochea JM, Owen P, Oyanguren A, Pais PR, Palano A, Palutan M, Papanestis A, Pappagallo M, Pappalardo LL, Pappenheimer C, Parker W, Parkes C, Passaleva G, Pastore A, Patel M, Patrignani C, Pearce A, Pellegrino A, Penso G, Pepe Altarelli M, Perazzini S, Perret P, Pescatore L, Petridis K, Petrolini A, Petrov A, Petruzzo M, Picatoste Olloqui E, Pietrzyk B, Pikies M, Pinci D, Pistone A, Piucci A, Placinta V, Playfer S, Plo Casasus M, Polci F, Poli Lener M, Poluektov A, Polyakov I, Polycarpo E, Pomery GJ, Ponce S, Popov A, Popov D, Poslavskii S, Potterat C, Price E, Prisciandaro J, Prouve C, Pugatch V, Puig Navarro A, Pullen H, Punzi G, Qian W, Quagliani R, Quintana B, Rachwal B, Rademacker JH, Rama M, Ramos Pernas M, Rangel MS, Raniuk I, Ratnikov F, Raven G, Ravonel Salzgeber M, Reboud M, Redi F, Reichert S, Dos Reis AC, Remon Alepuz C, Renaudin V, Ricciardi S, Richards S, Rihl M, Rinnert K, Rives Molina V, Robbe P, Robert A, Rodrigues AB, Rodrigues E, Rodriguez Lopez JA, Rodriguez Perez P, Rogozhnikov A, Roiser S, Rollings A, Romanovskiy V, Romero Vidal A, Ronayne JW, Rotondo M, Rudolph MS, Ruf T, Ruiz Valls P, Ruiz Vidal J, Saborido Silva JJ, Sadykhov E, Sagidova N, Saitta B, Salustino Guimaraes V, Sanchez Gonzalo D, Sanchez Mayordomo C, Sanmartin Sedes B, Santacesaria R, Santamarina Rios C, Santimaria M, Santovetti E, Sarpis G, Sarti A, Satriano C, Satta A, Saunders DM, Savrina D, Schael S, Schellenberg M, Schiller M, Schindler H, Schlupp M, Schmelling M, Schmelzer T, Schmidt B, Schneider O, Schopper A, Schreiner HF, Schubert K, Schubiger M, Schune MH, Schwemmer R, Sciascia B, Sciubba A, Semennikov A, Sergi A, Serra N, Serrano J, Sestini L, Seyfert P, Shapkin M, Shapoval I, Shcheglov Y, Shears T, Shekhtman L, Shevchenko V, Siddi BG, Silva Coutinho R, Silva de Oliveira L, Simi G, Simone S, Sirendi M, Skidmore N, Skwarnicki T, Smith E, Smith IT, Smith J, Smith M, Soares Lavra L, Sokoloff MD, Soler FJP, Souza De Paula B, Spaan B, Spradlin P, Sridharan S, Stagni F, Stahl M, Stahl S, Stefko P, Stefkova S, Steinkamp O, Stemmle S, Stenyakin O, Stepanova M, Stevens H, Stone S, Storaci B, Stracka S, Stramaglia ME, Straticiuc M, Straumann U, Sun L, Sutcliffe W, Swientek K, Syropoulos V, Szczekowski M, Szumlak T, Szymanski M, T'Jampens S, Tayduganov A, Tekampe T, Tellarini G, Teubert F, Thomas E, van Tilburg J, Tilley MJ, Tisserand V, Tobin M, Tolk S, Tomassetti L, Tonelli D, Toriello F, Tourinho Jadallah Aoude R, Tournefier E, Traill M, Tran MT, Tresch M, Trisovic A, Tsaregorodtsev A, Tsopelas P, Tully A, Tuning N, Ukleja A, Usachov A, Ustyuzhanin A, Uwer U, Vacca C, Vagner A, Vagnoni V, Valassi A, Valat S, Valenti G, Vazquez Gomez R, Vazquez Regueiro P, Vecchi S, van Veghel M, Velthuis JJ, Veltri M, Veneziano G, Venkateswaran A, Verlage TA, Vernet M, Vesterinen M, Viana Barbosa JV, Viaud B, Vieira D, Vieites Diaz M, Viemann H, Vilasis-Cardona X, Vitti M, Volkov V, Vollhardt A, Voneki B, Vorobyev A, Vorobyev V, Voß C, de Vries JA, Vázquez Sierra C, Waldi R, Wallace C, Wallace R, Walsh J, Wang J, Ward DR, Wark HM, Watson NK, Websdale D, Weiden A, Whitehead M, Wicht J, Wilkinson G, Wilkinson M, Williams M, Williams MP, Williams M, Williams T, Wilson FF, Wimberley J, Winn MA, Wishahi J, Wislicki W, Witek M, Wormser G, Wotton SA, Wraight K, Wyllie K, Xie Y, Xu Z, Yang Z, Yang Z, Yao Y, Yin H, Yu J, Yuan X, Yushchenko O, Zarebski KA, Zavertyaev M, Zhang L, Zhang Y, Zhelezov A, Zheng Y, Zhu X, Zhukov V, Zonneveld JB, Zucchelli S.
PMID: 28949228
Phys Rev Lett. 2017 Sep 15;119(11):112001. doi: 10.1103/PhysRevLett.119.112001. Epub 2017 Sep 11.

A highly significant structure is observed in the Λ_{c}^{+}K^{-}π^{+}π^{+} mass spectrum, where the Λ_{c}^{+} baryon is reconstructed in the decay mode pK^{-}π^{+}. The structure is consistent with originating from a weakly decaying particle, identified as the doubly charmed baryon...

Scientific reports

Osgood CL, Tantawy MN, Maloney N, Madaj ZB, Peck A, Boguslawski E, Jess J, Buck J, Winn ME, Manning HC, Grohar PJ.
PMID: 27671553
Sci Rep. 2016 Sep 27;6:33926. doi: 10.1038/srep33926.

Ewing sarcoma is a bone and soft-tissue tumor that depends on the activity of the EWS-FLI1 transcription factor for cell survival. Although a number of compounds have been shown to inhibit EWS-FLI1 in vitro, a clinical EWS-FLI1-directed therapy has...

Human CAFs promote lymphangiogenesis in ovarian cancer via the Hh-VEGF-C signaling axis.

Oncotarget

Wei R, Lv M, Li F, Cheng T, Zhang Z, Jiang G, Zhou Y, Gao R, Wei X, Lou J, Wu X, Luo D, Ma X, Jiang J, Ma D, Xi L.
PMID: 28978035
Oncotarget. 2017 Jun 27;8(40):67315-67328. doi: 10.18632/oncotarget.18621. eCollection 2017 Sep 15.

Cancer-associated fibroblasts (CAFs) play a pivotal role in the development and progression of many human cancers. Recent studies have shown that Hedgehog (Hh) signalling modulates the stromal microenvironment and prepares a suitable niche for tumour metastasis. However, the detailed...

Designing new catalysts for synthetic fuels: general discussion.

Faraday discussions

Holt K, Jewell L, Niemantsverdriet H, Macheli L, Shozi M, Hutchings G, Wezendonk T, Bowker M, Catlow R, Adam S, Kooyman PJ, Hensen E, Hayward J, Coville N, Weststrate KJ, Fischer N, Roldan A, Redekop E, van Steen E, Friedrich H, Kuo DH, Bandaru H, Deeplal L, Zivkovic A, Naiker K, Tucker C, Mkhwanazi TPO, Bahnemann D, Neurock M, Petersen A, Forbes RP, Phaahlamohlaka T, Schulz H, Lennon D, Olsbye U, Wolf M, Kondrat S, Collier P, Sun X, Zheng Y, Corma A, Iglesia E, Nyathi T, Ma D, Bremmer M, Claeys M, Kapteijn F.
PMID: 28422221
Faraday Discuss. 2017 Apr 28;197:353-388. doi: 10.1039/c7fd90011b.

No abstract available.

Trans-pQTL study identifies immune crosstalk between Parkinson and Alzheimer loci.

Neurology. Genetics

Chan G, White CC, Winn PA, Cimpean M, Replogle JM, Glick LR, Cuerdon NE, Ryan KJ, Johnson KA, Schneider JA, Bennett DA, Chibnik LB, Sperling RA, De Jager PL, Bradshaw EM.
PMID: 27504496
Neurol Genet. 2016 Jul 26;2(4):e90. doi: 10.1212/NXG.0000000000000090. eCollection 2016 Aug.

OBJECTIVE: Given evidence from genetic studies, we hypothesized that there may be a shared component to the role of myeloid function in Parkinson and Alzheimer disease (PD and AD) and assessed whether PD susceptibility variants influenced protein expression of...

Conductive Inks Based on a Lithium Titanate Nanotube Gel for High-Rate Lithium-Ion Batteries with Customized Configuration.

Advanced materials (Deerfield Beach, Fla.)

Tang Y, Zhang Y, Rui X, Qi D, Luo Y, Leow WR, Chen S, Guo J, Wei J, Li W, Deng J, Lai Y, Ma B, Chen X.
PMID: 26690727
Adv Mater. 2016 Feb 24;28(8):1567-76. doi: 10.1002/adma.201505161. Epub 2015 Dec 21.

Solution-processable inks based on lithium titanate with a conductive network architecture, toward high-rate lithium-ion batteries (LIBs) with a customized configuration are developed. The inks, with tunable viscosity, are compatible for on-demand coating techniques. The lithium titanate electrode derived from...

Critical analysis of the potential for microRNA biomarkers in breast cancer management.

Breast cancer (Dove Medical Press)

Graveel CR, Calderone HM, Westerhuis JJ, Winn ME, Sempere LF.
PMID: 25759599
Breast Cancer (Dove Med Press). 2015 Feb 23;7:59-79. doi: 10.2147/BCTT.S43799. eCollection 2015.

Breast cancer is a complex and heterogeneous disease. Signaling by estrogen receptor (ER), progesterone receptor (PR), and/or human EGF-like receptor 2 (HER2) is a main driver in the development and progression of a large majority of breast tumors. Molecular...

Impact of body mass index on outcomes of 48281 patients undergoing first time cadaveric liver transplantation.

World journal of transplantation

Ayloo S, Hurton S, Cwinn M, Molinari M.
PMID: 27358781
World J Transplant. 2016 Jun 24;6(2):356-69. doi: 10.5500/wjt.v6.i2.356.

AIM: To investigate possible disparities in perioperative morbidity and mortality among different body mass index (BMI) groups and to simulate the impact that these differences might have had on the cohort of patients undergoing cadaveric liver transplantation (LT).METHODS: All...

Showing 1 to 12 of 523 entries