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Tutorial on means of hybrid simulation

Broadening participation

Bell D, Eldabi T, Tako AA, Tolk A.
GSID: 36ikLCwonzAJ
T Eldabi, AA Tako, D Bell, A Tolk - 2019 Winter Simulation …, 2019 - ieeexplore.ieee.org

The benefits of Hybrid Simulation (HS) are well recorded in academic literature. It offers deeper insights into the real-life system as it allows modelers to assess its inherent problems …

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Eldabi, T., Tako, A. A., Bell, D., & Tolk, A. (2019, December). Tutorial on means of hybrid simulation. In 2019 Winter Simulation Conference (WSC) (pp. 33-44). IEEE.
Eldabi, Tillal, et al. "Tutorial on means of hybrid simulation." 2019 Winter Simulation Conference (WSC). IEEE, 2019.
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Quantitative Analysis of Fundus-Image Sequences Reveals Phase of Spontaneous Venous Pulsations.

Translational vision science & technology

Moret F, Reiff CM, Lagrèze WA, Bach M.
PMID: 26396929
Transl Vis Sci Technol. 2015 Sep 16;4(5):3. doi: 10.1167/tvst.4.5.3. eCollection 2015 Sep.

PURPOSE: Spontaneous venous pulsation correlates negatively with elevated intracranial pressure and papilledema, and it relates to glaucoma. Yet, its etiology remains unclear. A key element to elucidate its underlying mechanism is the time at which collapse occurs with respect...

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Moret F, Reiff CM, Lagrèze WA, et al. Quantitative Analysis of Fundus-Image Sequences Reveals Phase of Spontaneous Venous Pulsations. Transl Vis Sci Technol. 2015;4(5):3doi: 10.1167/tvst.4.5.3.
Moret, F., Reiff, C. M., Lagrèze, W. A., & Bach, M. (2015). Quantitative Analysis of Fundus-Image Sequences Reveals Phase of Spontaneous Venous Pulsations. Translational vision science & technology, 4(5), 3. https://doi.org/10.1167/tvst.4.5.3
Moret, Fabrice, et al. "Quantitative Analysis of Fundus-Image Sequences Reveals Phase of Spontaneous Venous Pulsations." Translational vision science & technology vol. 4,5 (2015): 3. doi: https://doi.org/10.1167/tvst.4.5.3
Moret F, Reiff CM, Lagrèze WA, Bach M. Quantitative Analysis of Fundus-Image Sequences Reveals Phase of Spontaneous Venous Pulsations. Transl Vis Sci Technol. 2015 Sep 16;4(5):3. doi: 10.1167/tvst.4.5.3. eCollection 2015 Sep. PMID: 26396929; PMCID: PMC4576698.
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Online analysis of H2S and SO2 via advanced mid-infrared gas sensors.

Analytical chemistry

Petruci JF, Wilk A, Cardoso AA, Mizaikoff B.
PMID: 26369419
Anal Chem. 2015 Oct 06;87(19):9605-11. doi: 10.1021/acs.analchem.5b02730.

Volatile sulfur compounds (VSCs) are among the most prevalent emitted pollutants in urban and rural atmospheres. Mainly because of the versatility of sulfur regarding its oxidation state (2- to 6+), VSCs are present in a wide variety of redox-environments,...

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Petruci JF, Wilk A, Cardoso AA, et al. Online analysis of H2S and SO2 via advanced mid-infrared gas sensors. Anal Chem. 2015;87(19):9605-11doi: 10.1021/acs.analchem.5b02730.
Petruci, J. F., Wilk, A., Cardoso, A. A., & Mizaikoff, B. (2015). Online analysis of H2S and SO2 via advanced mid-infrared gas sensors. Analytical chemistry, 87(19), 9605-11. https://doi.org/10.1021/acs.analchem.5b02730
Petruci, João Flavio da Silveira, et al. "Online analysis of H2S and SO2 via advanced mid-infrared gas sensors." Analytical chemistry vol. 87,19 (2015): 9605-11. doi: https://doi.org/10.1021/acs.analchem.5b02730
Petruci JF, Wilk A, Cardoso AA, Mizaikoff B. Online analysis of H2S and SO2 via advanced mid-infrared gas sensors. Anal Chem. 2015 Oct 06;87(19):9605-11. doi: 10.1021/acs.analchem.5b02730. PMID: 26369419.
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Light-controlled morphologies of self-assembled triarylamine-fullerene conjugates.

ACS nano

Busseron E, Cid JJ, Wolf A, Du G, Moulin E, Fuks G, Maaloum M, Polavarapu P, Ruff A, Saur AK, Ludwigs S, Giuseppone N.
PMID: 25734231
ACS Nano. 2015 Mar 24;9(3):2760-72. doi: 10.1021/nn506646m. Epub 2015 Mar 10.

A family of triarylamine-fullerene conjugates has been synthesized and shown to self-assemble upon light stimulation in chlorinated solvents. This light-induced process primarily involves excitation of triarylamine derivatives, which then oxidize and stack with their neutral counterparts to form charge...

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Busseron E, Cid JJ, Wolf A, et al. Light-controlled morphologies of self-assembled triarylamine-fullerene conjugates. ACS Nano. 2015;9(3):2760-72doi: 10.1021/nn506646m.
Busseron, E., Cid, J. J., Wolf, A., Du, G., Moulin, E., Fuks, G., Maaloum, M., Polavarapu, P., Ruff, A., Saur, A. K., Ludwigs, S., & Giuseppone, N. (2015). Light-controlled morphologies of self-assembled triarylamine-fullerene conjugates. ACS nano, 9(3), 2760-72. https://doi.org/10.1021/nn506646m
Busseron, Eric, et al. "Light-controlled morphologies of self-assembled triarylamine-fullerene conjugates." ACS nano vol. 9,3 (2015): 2760-72. doi: https://doi.org/10.1021/nn506646m
Busseron E, Cid JJ, Wolf A, Du G, Moulin E, Fuks G, Maaloum M, Polavarapu P, Ruff A, Saur AK, Ludwigs S, Giuseppone N. Light-controlled morphologies of self-assembled triarylamine-fullerene conjugates. ACS Nano. 2015 Mar 24;9(3):2760-72. doi: 10.1021/nn506646m. Epub 2015 Mar 10. PMID: 25734231.
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Molecular dynamics simulation of the deposition process of cold Ag-clusters under different landing conditions.

The Journal of chemical physics

Thaler P, Volk A, Ratschek M, Koch M, Ernst WE.
PMID: 25669542
J Chem Phys. 2014 Jan 28;140(4):044326. doi: 10.1063/1.4862917.

We present a series of molecular dynamics simulations on the surface deposition process of initially free silver clusters (Agn) with different sizes (n = 100-2000) and morphologies. During the whole deposition process the morphology of the clusters was studied...

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Thaler P, Volk A, Ratschek M, et al. Molecular dynamics simulation of the deposition process of cold Ag-clusters under different landing conditions. J Chem Phys. 2014;140(4):044326doi: 10.1063/1.4862917.
Thaler, P., Volk, A., Ratschek, M., Koch, M., & Ernst, W. E. (2014). Molecular dynamics simulation of the deposition process of cold Ag-clusters under different landing conditions. The Journal of chemical physics, 140(4), 044326. https://doi.org/10.1063/1.4862917
Thaler, Philipp, et al. "Molecular dynamics simulation of the deposition process of cold Ag-clusters under different landing conditions." The Journal of chemical physics vol. 140,4 (2014): 044326. doi: https://doi.org/10.1063/1.4862917
Thaler P, Volk A, Ratschek M, Koch M, Ernst WE. Molecular dynamics simulation of the deposition process of cold Ag-clusters under different landing conditions. J Chem Phys. 2014 Jan 28;140(4):044326. doi: 10.1063/1.4862917. PMID: 25669542.
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Neural Correlates of Verbal Episodic Memory and Lexical Retrieval in Logopenic Variant Primary Progressive Aphasia.

Frontiers in neuroscience

Win KT, Pluta J, Yushkevich P, Irwin DJ, McMillan CT, Rascovsky K, Wolk D, Grossman M.
PMID: 28659753
Front Neurosci. 2017 Jun 14;11:330. doi: 10.3389/fnins.2017.00330. eCollection 2017.

No abstract available.

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Win KT, Pluta J, Yushkevich P, et al. Neural Correlates of Verbal Episodic Memory and Lexical Retrieval in Logopenic Variant Primary Progressive Aphasia. Front Neurosci. 2017;11:330doi: 10.3389/fnins.2017.00330.
Win, K. T., Pluta, J., Yushkevich, P., Irwin, D. J., McMillan, C. T., Rascovsky, K., Wolk, D., & Grossman, M. (2017). Neural Correlates of Verbal Episodic Memory and Lexical Retrieval in Logopenic Variant Primary Progressive Aphasia. Frontiers in neuroscience, 11330. https://doi.org/10.3389/fnins.2017.00330
Win, Khaing T, et al. "Neural Correlates of Verbal Episodic Memory and Lexical Retrieval in Logopenic Variant Primary Progressive Aphasia." Frontiers in neuroscience vol. 11 (2017): 330. doi: https://doi.org/10.3389/fnins.2017.00330
Win KT, Pluta J, Yushkevich P, Irwin DJ, McMillan CT, Rascovsky K, Wolk D, Grossman M. Neural Correlates of Verbal Episodic Memory and Lexical Retrieval in Logopenic Variant Primary Progressive Aphasia. Front Neurosci. 2017 Jun 14;11:330. doi: 10.3389/fnins.2017.00330. eCollection 2017. PMID: 28659753; PMCID: PMC5469881.
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PP2C-like Promoter and Its Deletion Variants Are Induced by ABA but Not by MeJA and SA in Arabidopsis thaliana.

Frontiers in plant science

Bhalothia P, Sangwan C, Alok A, Mehrotra S, Mehrotra R.
PMID: 27200023
Front Plant Sci. 2016 May 03;7:547. doi: 10.3389/fpls.2016.00547. eCollection 2016.

Gene expression is mediated through interaction between cis regulatory elements and its cognate transcription factors. Cis regulatory elements are defined as non-coding DNA sequences that provide the binding sites for transcription factors and are clustered in the upstream region...

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Bhalothia P, Sangwan C, Alok A, et al. PP2C-like Promoter and Its Deletion Variants Are Induced by ABA but Not by MeJA and SA in Arabidopsis thaliana. Front Plant Sci. 2016;7:547doi: 10.3389/fpls.2016.00547.
Bhalothia, P., Sangwan, C., Alok, A., Mehrotra, S., & Mehrotra, R. (2016). PP2C-like Promoter and Its Deletion Variants Are Induced by ABA but Not by MeJA and SA in Arabidopsis thaliana. Frontiers in plant science, 7547. https://doi.org/10.3389/fpls.2016.00547
Bhalothia, Purva, et al. "PP2C-like Promoter and Its Deletion Variants Are Induced by ABA but Not by MeJA and SA in Arabidopsis thaliana." Frontiers in plant science vol. 7 (2016): 547. doi: https://doi.org/10.3389/fpls.2016.00547
Bhalothia P, Sangwan C, Alok A, Mehrotra S, Mehrotra R. PP2C-like Promoter and Its Deletion Variants Are Induced by ABA but Not by MeJA and SA in Arabidopsis thaliana. Front Plant Sci. 2016 May 03;7:547. doi: 10.3389/fpls.2016.00547. eCollection 2016. PMID: 27200023; PMCID: PMC4853407.
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Communication: Visible line intensities of the triatomic hydrogen ion from experiment and theory.

The Journal of chemical physics

Petrignani A, Berg MH, Grussie F, Wolf A, Mizus II, Polyansky OL, Tennyson J, Zobov NF, Pavanello M, Adamowicz L.
PMID: 25554125
J Chem Phys. 2014 Dec 28;141(24):241104. doi: 10.1063/1.4904440.

The visible spectrum of H3(+) is studied using high-sensitivity action spectroscopy in a cryogenic radiofrequency multipole trap. Advances are made to measure the weak ro-vibrational transitions from the lowest rotational states of H3(+) up to high excitation energies providing...

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Petrignani A, Berg MH, Grussie F, et al. Communication: Visible line intensities of the triatomic hydrogen ion from experiment and theory. J Chem Phys. 2014;141(24):241104doi: 10.1063/1.4904440.
Petrignani, A., Berg, M. H., Grussie, F., Wolf, A., Mizus, I. I., Polyansky, O. L., Tennyson, J., Zobov, N. F., Pavanello, M., & Adamowicz, L. (2014). Communication: Visible line intensities of the triatomic hydrogen ion from experiment and theory. The Journal of chemical physics, 141(24), 241104. https://doi.org/10.1063/1.4904440
Petrignani, Annemieke, et al. "Communication: Visible line intensities of the triatomic hydrogen ion from experiment and theory." The Journal of chemical physics vol. 141,24 (2014): 241104. doi: https://doi.org/10.1063/1.4904440
Petrignani A, Berg MH, Grussie F, Wolf A, Mizus II, Polyansky OL, Tennyson J, Zobov NF, Pavanello M, Adamowicz L. Communication: Visible line intensities of the triatomic hydrogen ion from experiment and theory. J Chem Phys. 2014 Dec 28;141(24):241104. doi: 10.1063/1.4904440. PMID: 25554125.
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The influence of deliberate practice on musical achievement: a meta-analysis.

Frontiers in psychology

Platz F, Kopiez R, Lehmann AC, Wolf A.
PMID: 25018742
Front Psychol. 2014 Jun 25;5:646. doi: 10.3389/fpsyg.2014.00646. eCollection 2014.

Deliberate practice (DP) is a task-specific structured training activity that plays a key role in understanding skill acquisition and explaining individual differences in expert performance. Relevant activities that qualify as DP have to be identified in every domain. For...

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Platz F, Kopiez R, Lehmann AC, et al. The influence of deliberate practice on musical achievement: a meta-analysis. Front Psychol. 2014;5:646doi: 10.3389/fpsyg.2014.00646.
Platz, F., Kopiez, R., Lehmann, A. C., & Wolf, A. (2014). The influence of deliberate practice on musical achievement: a meta-analysis. Frontiers in psychology, 5646. https://doi.org/10.3389/fpsyg.2014.00646
Platz, Friedrich, et al. "The influence of deliberate practice on musical achievement: a meta-analysis." Frontiers in psychology vol. 5 (2014): 646. doi: https://doi.org/10.3389/fpsyg.2014.00646
Platz F, Kopiez R, Lehmann AC, Wolf A. The influence of deliberate practice on musical achievement: a meta-analysis. Front Psychol. 2014 Jun 25;5:646. doi: 10.3389/fpsyg.2014.00646. eCollection 2014. PMID: 25018742; PMCID: PMC4073287.
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Formation of bimetallic clusters in superfluid helium nanodroplets analysed by atomic resolution electron tomography.

Nature communications

Haberfehlner G, Thaler P, Knez D, Volk A, Hofer F, Ernst WE, Kothleitner G.
PMID: 26508471
Nat Commun. 2015 Oct 28;6:8779. doi: 10.1038/ncomms9779.

Structure, shape and composition are the basic parameters responsible for properties of nanoscale materials, distinguishing them from their bulk counterparts. To reveal these in three dimensions at the nanoscale, electron tomography is a powerful tool. Advancing electron tomography to...

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Haberfehlner G, Thaler P, Knez D, et al. Formation of bimetallic clusters in superfluid helium nanodroplets analysed by atomic resolution electron tomography. Nat Commun. 2015;6:8779doi: 10.1038/ncomms9779.
Haberfehlner, G., Thaler, P., Knez, D., Volk, A., Hofer, F., Ernst, W. E., & Kothleitner, G. (2015). Formation of bimetallic clusters in superfluid helium nanodroplets analysed by atomic resolution electron tomography. Nature communications, 68779. https://doi.org/10.1038/ncomms9779
Haberfehlner, Georg, et al. "Formation of bimetallic clusters in superfluid helium nanodroplets analysed by atomic resolution electron tomography." Nature communications vol. 6 (2015): 8779. doi: https://doi.org/10.1038/ncomms9779
Haberfehlner G, Thaler P, Knez D, Volk A, Hofer F, Ernst WE, Kothleitner G. Formation of bimetallic clusters in superfluid helium nanodroplets analysed by atomic resolution electron tomography. Nat Commun. 2015 Oct 28;6:8779. doi: 10.1038/ncomms9779. PMID: 26508471; PMCID: PMC4640115.
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iHEART: a miniaturized near-infrared in-line gas sensor using heart-shaped substrate-integrated hollow waveguides.

The Analyst

Ribessi RL, Neves Tde A, Rohwedder JJ, Pasquini C, Raimundo IM, Wilk A, Kokoric V, Mizaikoff B.
PMID: 27509444
Analyst. 2016 Sep 21;141(18):5298-303. doi: 10.1039/c6an01027j. Epub 2016 Aug 10.

A novel heart-shaped substrate-integrated hollow waveguide (hiHWG) was integrated with a near-infrared micro-spectrometer (μNIR) for sensing natural gases, resulting in an ultra-compact near-infrared gas sensing system - iHEART. The iHEART system was evaluated using two different μNIR spectrometers, and...

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Ribessi RL, Neves Tde A, Rohwedder JJ, et al. iHEART: a miniaturized near-infrared in-line gas sensor using heart-shaped substrate-integrated hollow waveguides. Analyst. 2016;141(18):5298-303doi: 10.1039/c6an01027j.
Ribessi, R. L., Neves, T. d. e. . A., Rohwedder, J. J., Pasquini, C., Raimundo, I. M., Wilk, A., Kokoric, V., & Mizaikoff, B. (2016). iHEART: a miniaturized near-infrared in-line gas sensor using heart-shaped substrate-integrated hollow waveguides. The Analyst, 141(18), 5298-303. https://doi.org/10.1039/c6an01027j
Ribessi, Rafael L, et al. "iHEART: a miniaturized near-infrared in-line gas sensor using heart-shaped substrate-integrated hollow waveguides." The Analyst vol. 141,18 (2016): 5298-303. doi: https://doi.org/10.1039/c6an01027j
Ribessi RL, Neves Tde A, Rohwedder JJ, Pasquini C, Raimundo IM, Wilk A, Kokoric V, Mizaikoff B. iHEART: a miniaturized near-infrared in-line gas sensor using heart-shaped substrate-integrated hollow waveguides. Analyst. 2016 Sep 21;141(18):5298-303. doi: 10.1039/c6an01027j. Epub 2016 Aug 10. PMID: 27509444.
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Isomer-Specific IR-IR Double Resonance Spectroscopy of D2-Tagged Protonated Dipeptides Prepared in a Cryogenic Ion Trap.

The journal of physical chemistry letters

Leavitt CM, Wolk AB, Fournier JA, Kamrath MZ, Garand E, Van Stipdonk MJ, Johnson MA.
PMID: 26288043
J Phys Chem Lett. 2012 May 03;3(9):1099-105. doi: 10.1021/jz3003074. Epub 2012 Apr 12.

Isomer-specific vibrational predissociation spectra are reported for the gas-phase GlySarH(+) and SarSarH(+) [Gly = glycine; Sar = sarcosine] ions prepared by electrospray ionization and tagged with weakly bound D2 adducts using a cryogenic ion trap. The contributions of individual...

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Leavitt CM, Wolk AB, Fournier JA, et al. Isomer-Specific IR-IR Double Resonance Spectroscopy of D2-Tagged Protonated Dipeptides Prepared in a Cryogenic Ion Trap. J Phys Chem Lett. 2012;3(9):1099-105doi: 10.1021/jz3003074.
Leavitt, C. M., Wolk, A. B., Fournier, J. A., Kamrath, M. Z., Garand, E., Van Stipdonk, M. J., & Johnson, M. A. (2012). Isomer-Specific IR-IR Double Resonance Spectroscopy of D2-Tagged Protonated Dipeptides Prepared in a Cryogenic Ion Trap. The journal of physical chemistry letters, 3(9), 1099-105. https://doi.org/10.1021/jz3003074
Leavitt, Christopher M, et al. "Isomer-Specific IR-IR Double Resonance Spectroscopy of D2-Tagged Protonated Dipeptides Prepared in a Cryogenic Ion Trap." The journal of physical chemistry letters vol. 3,9 (2012): 1099-105. doi: https://doi.org/10.1021/jz3003074
Leavitt CM, Wolk AB, Fournier JA, Kamrath MZ, Garand E, Van Stipdonk MJ, Johnson MA. Isomer-Specific IR-IR Double Resonance Spectroscopy of D2-Tagged Protonated Dipeptides Prepared in a Cryogenic Ion Trap. J Phys Chem Lett. 2012 May 03;3(9):1099-105. doi: 10.1021/jz3003074. Epub 2012 Apr 12. PMID: 26288043.
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Showing 1 to 12 of 1089 entries