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Abstracts from the 8th Annual Meeting of the Scientific Association of Swiss Radiation Oncology (SASRO).

Strahlentherapie und Onkologie : Organ der Deutschen Rontgengesellschaft ... [et al]

Allal AS, Ares C, Dulguerov P, Tschanz E, Verdan C, Mhawech P, Riesterer O, Honer M, Vuong V, Jochum W, Zingg D, Bodis S, Ametamey S, Pruschy M, Inteeworn N, Ohlerth S, Höpfl G, Roos M, Wergin M, Rohrer Bley C, Gassmann M, Kaser-Hotz B, Berthou S, Aebersold DM, Ganapathipillai S, Streit B, Stalder D, Gruber G, Greiner RH, Zimmer Y, Lutters G, Krek W, Tenzer A, Hofstetter B, Bonny C, Azria A, Larbouret C, Cunat S, Ozsahin M, Zouhair A, Gourgou S, Martineau P, Evans DB, Romieu G, Pujol P, Pèlegrin A, Heuberger J, Kestenholz P, Taverna Ch, Lardinois D, Jörger M, Schneiter D, Jerman M, Weder W, Stahel R, Bodis S, Vees H, Mach N, Hügli A, Balmer Majno S, Beer KT, Friedrich EE, Ciernik IF, Stanek N, Taverna C, Greiner R, Mahler F, Landmann Ch, Studer G, Bernier J, Gallino A, Juelke PD, Hafner HP, Jamshidi P, Erne P, Resink TJ, Thum P, Notter M, Bargetzi M, Suleiman M, Luthi JC, Bieri S, Curschmann J, Pajic B, Kranzbühler H, Lippold B, Ueltschi G, Bonetti M, Nasi ML, Price KN, Castiglione-Gertsch M, Rudenstam CM, Holmberg SB, Lindtner J, Gol-Ouh R, Collins J, Crivellari D, Carbone A, Thürlimann B, Simoncini E, Fey MF, Gelber RD, Coates AS, Goldhirsch A, Jeanneret Sozzi W, Kramar A, Mirimanoff RO, Azria D, Taussky D, Becker M, Kranzbuehler H, Weitzel M, Bortoluzzi L, Behrensmeier F, Isaak B, Pasche P, Luthi F, Weber DC, Lomax AJ, Rutz HP, Pedroni ES, Verwey J, Goitein G, Timmermann B, Lomax A, Bolsi A, Weber D, Bentzen SM, Khalil AA, Saunders MI, Horiot JC, Van den Bogaert W, Cummings BJ, Dische S, Slosman DO, Kebdani T, Allaoua M, Stadelmann O, Stupp R, Pica A, Dubois JB, Oehler C, Ulmer U, Lütolf UM, Huser M, Burger C, Szekely G, Davis JB, Gervaz P, Gertsch P, Morel P, Roth AD, Zenklusen H, Schott A, Curti G, Schefer H, Kolotas C, Thalmann G, Vetterli D, Kemmerling L, Mini R, Rouzaud M, Nouet P, Mollà M, Escudé L, Miralbell R, Beer K, von Briel C, Jichlinski P, Guillou L, Fogliata A, Nicolini G, Cozzi L, Hafner HP, Hueber P, Szczerba D, Born EJ, Dipasquale G, Jargy C, Munier F, Balmer A, Do HP, Pasche G, Wang H, Moeckli R, Boehringer T, Coray A, Lin S, Pedroni E, Rutz H, Baumert BG, Norton IA, Schoenmaker E, Krayenbühl J, Bründler MA, Allemann K, Laluhovà D, Collen T, Coucke P, Ries G, Rufibach K, Huguenin P, Abdou M, Girardet C, Vees HJ, Bigler R, Özsoy O, Bouville S, Corminboeuf F, Betz M, Matzinger O, Tebeu P, Popowski Y, Verkooijen H, Bouchardy C, Ludicke F, Usel M, Major A, Merçay A, Pache G, Bulling S, Bressan S, Valley JF, Motta M, Presilla S, Richetti A, Franzetti A, Pesce G.
PMID: 27137923
Strahlenther Onkol. 2004 Jun;180:89-108. doi: 10.1007/BF03356735.

No abstract available.

Cite
Allal AS, Ares C, Dulguerov P, et al. Abstracts from the 8th Annual Meeting of the Scientific Association of Swiss Radiation Oncology (SASRO). Strahlenther Onkol. 2004;180:89-108doi: 10.1007/BF03356735.
Allal, A. S., Ares, C., Dulguerov, P., Tschanz, E., Verdan, C., Mhawech, P., Riesterer, O., Honer, M., Vuong, V., Jochum, W., Zingg, D., Bodis, S., Ametamey, S., Pruschy, M., Inteeworn, N., Ohlerth, S., Höpfl, G., Roos, M., Wergin, M., Rohrer Bley, C., Gassmann, M., Kaser-Hotz, B., Berthou, S., Aebersold, D. M., Ganapathipillai, S., Streit, B., Stalder, D., Gruber, G., Greiner, R. H., Zimmer, Y., Lutters, G., Krek, W., Tenzer, A., Hofstetter, B., Bonny, C., Azria, A., Larbouret, C., Cunat, S., Ozsahin, M., Zouhair, A., Gourgou, S., Martineau, P., Evans, D. B., Romieu, G., Pujol, P., Pèlegrin, A., Heuberger, J., Kestenholz, P., Taverna, C. h., Lardinois, D., Jörger, M., Schneiter, D., Jerman, M., Weder, W., Stahel, R., Bodis, S., Vees, H., Mach, N., Hügli, A., Balmer Majno, S., Beer, K. T., Friedrich, E. E., Ciernik, I. F., Stanek, N., Taverna, C., Greiner, R., Mahler, F., Landmann, C. h., Studer, G., Bernier, J., Gallino, A., Juelke, P. D., Hafner, H. P., Jamshidi, P., Erne, P., Resink, T. J., Thum, P., Notter, M., Bargetzi, M., Suleiman, M., Luthi, J. C., Bieri, S., Curschmann, J., Pajic, B., Kranzbühler, H., Lippold, B., Ueltschi, G., Bonetti, M., Nasi, M. L., Price, K. N., Castiglione-Gertsch, M., Rudenstam, C. M., Holmberg, S. B., Lindtner, J., Gol-Ouh, R., Collins, J., Crivellari, D., Carbone, A., Thürlimann, B., Simoncini, E., Fey, M. F., Gelber, R. D., Coates, A. S., Goldhirsch, A., Jeanneret Sozzi, W., Kramar, A., Mirimanoff, R. O., Azria, D., Taussky, D., Becker, M., Kranzbuehler, H., Weitzel, M., Bortoluzzi, L., Behrensmeier, F., Isaak, B., Pasche, P., Luthi, F., Weber, D. C., Lomax, A. J., Rutz, H. P., Pedroni, E. S., Verwey, J., Goitein, G., Timmermann, B., Lomax, A., Bolsi, A., Weber, D., Bentzen, S. M., Khalil, A. A., Saunders, M. I., Horiot, J. C., Van den Bogaert, W., Cummings, B. J., Dische, S., Slosman, D. O., Kebdani, T., Allaoua, M., Stadelmann, O., Stupp, R., Pica, A., Dubois, J. B., Oehler, C., Ulmer, U., Lütolf, U. M., Huser, M., Burger, C., Szekely, G., Davis, J. B., Gervaz, P., Gertsch, P., Morel, P., Roth, A. D., Zenklusen, H., Schott, A., Curti, G., Schefer, H., Kolotas, C., Thalmann, G., Vetterli, D., Kemmerling, L., Mini, R., Rouzaud, M., Nouet, P., Mollà, M., Escudé, L., Miralbell, R., Beer, K., von Briel, C., Jichlinski, P., Guillou, L., Fogliata, A., Nicolini, G., Cozzi, L., Hafner, H. P., Hueber, P., Szczerba, D., Born, E. J., Dipasquale, G., Jargy, C., Munier, F., Balmer, A., Do, H. P., Pasche, G., Wang, H., Moeckli, R., Boehringer, T., Coray, A., Lin, S., Pedroni, E., Rutz, H., Baumert, B. G., Norton, I. A., Schoenmaker, E., Krayenbühl, J., Bründler, M. A., Allemann, K., Laluhovà, D., Collen, T., Coucke, P., Ries, G., Rufibach, K., Huguenin, P., Abdou, M., Girardet, C., Vees, H. J., Bigler, R., Özsoy, O., Bouville, S., Corminboeuf, F., Betz, M., Matzinger, O., Tebeu, P., Popowski, Y., Verkooijen, H., Bouchardy, C., Ludicke, F., Usel, M., Major, A., Merçay, A., Pache, G., Bulling, S., Bressan, S., Valley, J. F., Motta, M., Presilla, S., Richetti, A., Franzetti, A., & Pesce, G. (2004). Abstracts from the 8th Annual Meeting of the Scientific Association of Swiss Radiation Oncology (SASRO). Strahlentherapie und Onkologie : Organ der Deutschen Rontgengesellschaft ... [et al], 18089-108. https://doi.org/10.1007/BF03356735
Allal, A S, et al. "Abstracts from the 8th Annual Meeting of the Scientific Association of Swiss Radiation Oncology (SASRO)." Strahlentherapie und Onkologie : Organ der Deutschen Rontgengesellschaft ... [et al] vol. 180 (2004): 89-108. doi: https://doi.org/10.1007/BF03356735
Allal AS, Ares C, Dulguerov P, Tschanz E, Verdan C, Mhawech P, Riesterer O, Honer M, Vuong V, Jochum W, Zingg D, Bodis S, Ametamey S, Pruschy M, Inteeworn N, Ohlerth S, Höpfl G, Roos M, Wergin M, Rohrer Bley C, Gassmann M, Kaser-Hotz B, Berthou S, Aebersold DM, Ganapathipillai S, Streit B, Stalder D, Gruber G, Greiner RH, Zimmer Y, Lutters G, Krek W, Tenzer A, Hofstetter B, Bonny C, Azria A, Larbouret C, Cunat S, Ozsahin M, Zouhair A, Gourgou S, Martineau P, Evans DB, Romieu G, Pujol P, Pèlegrin A, Heuberger J, Kestenholz P, Taverna Ch, Lardinois D, Jörger M, Schneiter D, Jerman M, Weder W, Stahel R, Bodis S, Vees H, Mach N, Hügli A, Balmer Majno S, Beer KT, Friedrich EE, Ciernik IF, Stanek N, Taverna C, Greiner R, Mahler F, Landmann Ch, Studer G, Bernier J, Gallino A, Juelke PD, Hafner HP, Jamshidi P, Erne P, Resink TJ, Thum P, Notter M, Bargetzi M, Suleiman M, Luthi JC, Bieri S, Curschmann J, Pajic B, Kranzbühler H, Lippold B, Ueltschi G, Bonetti M, Nasi ML, Price KN, Castiglione-Gertsch M, Rudenstam CM, Holmberg SB, Lindtner J, Gol-Ouh R, Collins J, Crivellari D, Carbone A, Thürlimann B, Simoncini E, Fey MF, Gelber RD, Coates AS, Goldhirsch A, Jeanneret Sozzi W, Kramar A, Mirimanoff RO, Azria D, Taussky D, Becker M, Kranzbuehler H, Weitzel M, Bortoluzzi L, Behrensmeier F, Isaak B, Pasche P, Luthi F, Weber DC, Lomax AJ, Rutz HP, Pedroni ES, Verwey J, Goitein G, Timmermann B, Lomax A, Bolsi A, Weber D, Bentzen SM, Khalil AA, Saunders MI, Horiot JC, Van den Bogaert W, Cummings BJ, Dische S, Slosman DO, Kebdani T, Allaoua M, Stadelmann O, Stupp R, Pica A, Dubois JB, Oehler C, Ulmer U, Lütolf UM, Huser M, Burger C, Szekely G, Davis JB, Gervaz P, Gertsch P, Morel P, Roth AD, Zenklusen H, Schott A, Curti G, Schefer H, Kolotas C, Thalmann G, Vetterli D, Kemmerling L, Mini R, Rouzaud M, Nouet P, Mollà M, Escudé L, Miralbell R, Beer K, von Briel C, Jichlinski P, Guillou L, Fogliata A, Nicolini G, Cozzi L, Hafner HP, Hueber P, Szczerba D, Born EJ, Dipasquale G, Jargy C, Munier F, Balmer A, Do HP, Pasche G, Wang H, Moeckli R, Boehringer T, Coray A, Lin S, Pedroni E, Rutz H, Baumert BG, Norton IA, Schoenmaker E, Krayenbühl J, Bründler MA, Allemann K, Laluhovà D, Collen T, Coucke P, Ries G, Rufibach K, Huguenin P, Abdou M, Girardet C, Vees HJ, Bigler R, Özsoy O, Bouville S, Corminboeuf F, Betz M, Matzinger O, Tebeu P, Popowski Y, Verkooijen H, Bouchardy C, Ludicke F, Usel M, Major A, Merçay A, Pache G, Bulling S, Bressan S, Valley JF, Motta M, Presilla S, Richetti A, Franzetti A, Pesce G. Abstracts from the 8th Annual Meeting of the Scientific Association of Swiss Radiation Oncology (SASRO). Strahlenther Onkol. 2004 Jun;180:89-108. doi: 10.1007/BF03356735. PMID: 27137923.
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Imaging Real-Time Gene Expression in Living Systems with Single-Transcript Resolution: Single mRNA Particle Tracking with ImageJ-Based Analysis.

CSH protocols

Wells AL, Condeelis JS, Singer RH, Zenklusen D.
PMID: 21356980
CSH Protoc. 2007 Nov 01;2007:pdb.prot4872. doi: 10.1101/pdb.prot4872.

INTRODUCTIONThis protocol describes the use of ImageJ software (freely available from NIH) to analyze particle dynamics in a cell using time-lapse movie frames or image stacks of fluorescent mRNA particles. Maximum intensity projections and kymographs are produced.

Cite
Wells AL, Condeelis JS, Singer RH, et al. Imaging Real-Time Gene Expression in Living Systems with Single-Transcript Resolution: Single mRNA Particle Tracking with ImageJ-Based Analysis. CSH Protoc. 2007;2007:pdb.prot4872doi: 10.1101/pdb.prot4872.
Wells, A. L., Condeelis, J. S., Singer, R. H., & Zenklusen, D. (2007). Imaging Real-Time Gene Expression in Living Systems with Single-Transcript Resolution: Single mRNA Particle Tracking with ImageJ-Based Analysis. CSH protocols, 2007pdb.prot4872. https://doi.org/10.1101/pdb.prot4872
Wells, Amber L, et al. "Imaging Real-Time Gene Expression in Living Systems with Single-Transcript Resolution: Single mRNA Particle Tracking with ImageJ-Based Analysis." CSH protocols vol. 2007 (2007): pdb.prot4872. doi: https://doi.org/10.1101/pdb.prot4872
Wells AL, Condeelis JS, Singer RH, Zenklusen D. Imaging Real-Time Gene Expression in Living Systems with Single-Transcript Resolution: Single mRNA Particle Tracking with ImageJ-Based Analysis. CSH Protoc. 2007 Nov 01;2007:pdb.prot4872. doi: 10.1101/pdb.prot4872. PMID: 21356980; PMCID: PMC4963622.
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Whole-genome characterization of lung adenocarcinomas lacking the RTK/RAS/RAF pathway.

Cell reports

Carrot-Zhang J, Yao X, Devarakonda S, Deshpande A, Damrauer JS, Silva TC, Wong CK, Choi HY, Felau I, Robertson AG, Castro MAA, Bao L, Rheinbay E, Liu EM, Trieu T, Haan D, Yau C, Hinoue T, Liu Y, Shapira O, Kumar K, Mungall KL, Zhang H, Lee JJ, Berger A, Gao GF, Zhitomirsky B, Liang WW, Zhou M, Moorthi S, Berger AH, Collisson EA, Zody MC, Ding L, Cherniack AD, Getz G, Elemento O, Benz CC, Stuart J, Zenklusen JC, Beroukhim R, Chang JC, Campbell JD, Hayes DN, Yang L, Laird PW, Weinstein JN, Kwiatkowski DJ, Tsao MS, Travis WD, Khurana E, Berman BP, Hoadley KA, Robine N, Meyerson M, Govindan R, Imielinski M.
PMID: 33535033
Cell Rep. 2021 Feb 02;34(5):108707. doi: 10.1016/j.celrep.2021.108707.

RTK/RAS/RAF pathway alterations (RPAs) are a hallmark of lung adenocarcinoma (LUAD). In this study, we use whole-genome sequencing (WGS) of 85 cases found to be RPA(-) by previous studies from The Cancer Genome Atlas (TCGA) to characterize the minority...

Cite
Carrot-Zhang J, Yao X, Devarakonda S, et al. Whole-genome characterization of lung adenocarcinomas lacking the RTK/RAS/RAF pathway. Cell Rep. 2021;34(5):108707doi: 10.1016/j.celrep.2021.108707.
Carrot-Zhang, J., Yao, X., Devarakonda, S., Deshpande, A., Damrauer, J. S., Silva, T. C., Wong, C. K., Choi, H. Y., Felau, I., Robertson, A. G., Castro, M. A. A., Bao, L., Rheinbay, E., Liu, E. M., Trieu, T., Haan, D., Yau, C., Hinoue, T., Liu, Y., Shapira, O., Kumar, K., Mungall, K. L., Zhang, H., Lee, J. J., Berger, A., Gao, G. F., Zhitomirsky, B., Liang, W. W., Zhou, M., Moorthi, S., Berger, A. H., Collisson, E. A., Zody, M. C., Ding, L., Cherniack, A. D., Getz, G., Elemento, O., Benz, C. C., Stuart, J., Zenklusen, J. C., Beroukhim, R., Chang, J. C., Campbell, J. D., Hayes, D. N., Yang, L., Laird, P. W., Weinstein, J. N., Kwiatkowski, D. J., Tsao, M. S., Travis, W. D., Khurana, E., Berman, B. P., Hoadley, K. A., Robine, N., Meyerson, M., Govindan, R., & Imielinski, M. (2021). Whole-genome characterization of lung adenocarcinomas lacking the RTK/RAS/RAF pathway. Cell reports, 34(5), 108707. https://doi.org/10.1016/j.celrep.2021.108707
Carrot-Zhang, Jian, et al. "Whole-genome characterization of lung adenocarcinomas lacking the RTK/RAS/RAF pathway." Cell reports vol. 34,5 (2021): 108707. doi: https://doi.org/10.1016/j.celrep.2021.108707
Carrot-Zhang J, Yao X, Devarakonda S, Deshpande A, Damrauer JS, Silva TC, Wong CK, Choi HY, Felau I, Robertson AG, Castro MAA, Bao L, Rheinbay E, Liu EM, Trieu T, Haan D, Yau C, Hinoue T, Liu Y, Shapira O, Kumar K, Mungall KL, Zhang H, Lee JJ, Berger A, Gao GF, Zhitomirsky B, Liang WW, Zhou M, Moorthi S, Berger AH, Collisson EA, Zody MC, Ding L, Cherniack AD, Getz G, Elemento O, Benz CC, Stuart J, Zenklusen JC, Beroukhim R, Chang JC, Campbell JD, Hayes DN, Yang L, Laird PW, Weinstein JN, Kwiatkowski DJ, Tsao MS, Travis WD, Khurana E, Berman BP, Hoadley KA, Robine N, Meyerson M, Govindan R, Imielinski M. Whole-genome characterization of lung adenocarcinomas lacking the RTK/RAS/RAF pathway. Cell Rep. 2021 Feb 02;34(5):108707. doi: 10.1016/j.celrep.2021.108707. PMID: 33535033; PMCID: PMC8009291.
Copy Download .nbib Format: NLM
Whole-genome characterization of lung adenocarcinomas lacking the RTK/RAS/RAF pathway.

Cell reports

Carrot-Zhang J, Yao X, Devarakonda S, Deshpande A, Damrauer JS, Silva TC, Wong CK, Choi HY, Felau I, Robertson AG, Castro MAA, Bao L, Rheinbay E, Liu EM, Trieu T, Haan D, Yau C, Hinoue T, Liu Y, Shapira O, Kumar K, Mungall KL, Zhang H, Lee JJ, Berger A, Gao GF, Zhitomirsky B, Liang WW, Zhou M, Moorthi S, Berger AH, Collisson EA, Zody MC, Ding L, Cherniack AD, Getz G, Elemento O, Benz CC, Stuart J, Zenklusen JC, Beroukhim R, Chang JC, Campbell JD, Hayes DN, Yang L, Laird PW, Weinstein JN, Kwiatkowski DJ, Tsao MS, Travis WD, Khurana E, Berman BP, Hoadley KA, Robine N, Meyerson M, Govindan R, Imielinski M.
PMID: 33535033
Cell Rep. 2021 Feb 02;34(5):108707. doi: 10.1016/j.celrep.2021.108707.

RTK/RAS/RAF pathway alterations (RPAs) are a hallmark of lung adenocarcinoma (LUAD). In this study, we use whole-genome sequencing (WGS) of 85 cases found to be RPA(-) by previous studies from The Cancer Genome Atlas (TCGA) to characterize the minority...

Cite
Carrot-Zhang J, Yao X, Devarakonda S, et al. Whole-genome characterization of lung adenocarcinomas lacking the RTK/RAS/RAF pathway. Cell Rep. 2021;34(5):108707doi: 10.1016/j.celrep.2021.108707.
Carrot-Zhang, J., Yao, X., Devarakonda, S., Deshpande, A., Damrauer, J. S., Silva, T. C., Wong, C. K., Choi, H. Y., Felau, I., Robertson, A. G., Castro, M. A. A., Bao, L., Rheinbay, E., Liu, E. M., Trieu, T., Haan, D., Yau, C., Hinoue, T., Liu, Y., Shapira, O., Kumar, K., Mungall, K. L., Zhang, H., Lee, J. J., Berger, A., Gao, G. F., Zhitomirsky, B., Liang, W. W., Zhou, M., Moorthi, S., Berger, A. H., Collisson, E. A., Zody, M. C., Ding, L., Cherniack, A. D., Getz, G., Elemento, O., Benz, C. C., Stuart, J., Zenklusen, J. C., Beroukhim, R., Chang, J. C., Campbell, J. D., Hayes, D. N., Yang, L., Laird, P. W., Weinstein, J. N., Kwiatkowski, D. J., Tsao, M. S., Travis, W. D., Khurana, E., Berman, B. P., Hoadley, K. A., Robine, N., Meyerson, M., Govindan, R., & Imielinski, M. (2021). Whole-genome characterization of lung adenocarcinomas lacking the RTK/RAS/RAF pathway. Cell reports, 34(5), 108707. https://doi.org/10.1016/j.celrep.2021.108707
Carrot-Zhang, Jian, et al. "Whole-genome characterization of lung adenocarcinomas lacking the RTK/RAS/RAF pathway." Cell reports vol. 34,5 (2021): 108707. doi: https://doi.org/10.1016/j.celrep.2021.108707
Carrot-Zhang J, Yao X, Devarakonda S, Deshpande A, Damrauer JS, Silva TC, Wong CK, Choi HY, Felau I, Robertson AG, Castro MAA, Bao L, Rheinbay E, Liu EM, Trieu T, Haan D, Yau C, Hinoue T, Liu Y, Shapira O, Kumar K, Mungall KL, Zhang H, Lee JJ, Berger A, Gao GF, Zhitomirsky B, Liang WW, Zhou M, Moorthi S, Berger AH, Collisson EA, Zody MC, Ding L, Cherniack AD, Getz G, Elemento O, Benz CC, Stuart J, Zenklusen JC, Beroukhim R, Chang JC, Campbell JD, Hayes DN, Yang L, Laird PW, Weinstein JN, Kwiatkowski DJ, Tsao MS, Travis WD, Khurana E, Berman BP, Hoadley KA, Robine N, Meyerson M, Govindan R, Imielinski M. Whole-genome characterization of lung adenocarcinomas lacking the RTK/RAS/RAF pathway. Cell Rep. 2021 Feb 02;34(5):108707. doi: 10.1016/j.celrep.2021.108707. PMID: 33535033; PMCID: PMC8009291.
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Author Correction: The NCI Genomic Data Commons.

Nature genetics

Heath AP, Ferretti V, Agrawal S, An M, Angelakos JC, Arya R, Bajari R, Baqar B, Barnowski JHB, Burt J, Catton A, Chan BF, Chu F, Cullion K, Davidsen T, Do PM, Dompierre C, Ferguson ML, Fitzsimons MS, Ford M, Fukuma M, Gaheen S, Ganji GL, Garcia TI, George SS, Gerhard DS, Gerthoffert F, Gomez F, Han K, Hernandez KM, Issac B, Jackson R, Jensen MA, Joshi S, Kadam A, Khurana A, Kim KMJ, Kraft VE, Li S, Lichtenberg TM, Lodato J, Lolla L, Martinov P, Mazzone JA, Miller DP, Miller I, Miller JS, Miyauchi K, Murphy MW, Nullet T, Ogwara RO, Ortuño FM, Pedrosa J, Pham PL, Popov MY, Porter JJ, Powell R, Rademacher K, Reid CP, Rich S, Rogel B, Sahni H, Savage JH, Schmitt KA, Simmons TJ, Sislow J, Spring J, Stein L, Sullivan S, Tang Y, Thiagarajan M, Troyer HD, Wang C, Wang Z, West BL, Wilmer A, Wilson S, Wu K, Wysocki WP, Xiang L, Yamada JT, Yang L, Yu C, Yung CK, Zenklusen JC, Zhang J, Zhang Z, Zhao Y, Zubair A, Staudt LM, Grossman RL.
PMID: 34007079
Nat Genet. 2021 Jun;53(6):935. doi: 10.1038/s41588-021-00883-2.

No abstract available.

Cite
Heath AP, Ferretti V, Agrawal S, et al. Author Correction: The NCI Genomic Data Commons. Nat Genet. 2021;53(6):935doi: 10.1038/s41588-021-00883-2.
Heath, A. P., Ferretti, V., Agrawal, S., An, M., Angelakos, J. C., Arya, R., Bajari, R., Baqar, B., Barnowski, J. H. B., Burt, J., Catton, A., Chan, B. F., Chu, F., Cullion, K., Davidsen, T., Do, P. M., Dompierre, C., Ferguson, M. L., Fitzsimons, M. S., Ford, M., Fukuma, M., Gaheen, S., Ganji, G. L., Garcia, T. I., George, S. S., Gerhard, D. S., Gerthoffert, F., Gomez, F., Han, K., Hernandez, K. M., Issac, B., Jackson, R., Jensen, M. A., Joshi, S., Kadam, A., Khurana, A., Kim, K. M. J., Kraft, V. E., Li, S., Lichtenberg, T. M., Lodato, J., Lolla, L., Martinov, P., Mazzone, J. A., Miller, D. P., Miller, I., Miller, J. S., Miyauchi, K., Murphy, M. W., Nullet, T., Ogwara, R. O., Ortuño, F. M., Pedrosa, J., Pham, P. L., Popov, M. Y., Porter, J. J., Powell, R., Rademacher, K., Reid, C. P., Rich, S., Rogel, B., Sahni, H., Savage, J. H., Schmitt, K. A., Simmons, T. J., Sislow, J., Spring, J., Stein, L., Sullivan, S., Tang, Y., Thiagarajan, M., Troyer, H. D., Wang, C., Wang, Z., West, B. L., Wilmer, A., Wilson, S., Wu, K., Wysocki, W. P., Xiang, L., Yamada, J. T., Yang, L., Yu, C., Yung, C. K., Zenklusen, J. C., Zhang, J., Zhang, Z., Zhao, Y., Zubair, A., Staudt, L. M., & Grossman, R. L. (2021). Author Correction: The NCI Genomic Data Commons. Nature genetics, 53(6), 935. https://doi.org/10.1038/s41588-021-00883-2
Heath, Allison P, et al. "Author Correction: The NCI Genomic Data Commons." Nature genetics vol. 53,6 (2021): 935. doi: https://doi.org/10.1038/s41588-021-00883-2
Heath AP, Ferretti V, Agrawal S, An M, Angelakos JC, Arya R, Bajari R, Baqar B, Barnowski JHB, Burt J, Catton A, Chan BF, Chu F, Cullion K, Davidsen T, Do PM, Dompierre C, Ferguson ML, Fitzsimons MS, Ford M, Fukuma M, Gaheen S, Ganji GL, Garcia TI, George SS, Gerhard DS, Gerthoffert F, Gomez F, Han K, Hernandez KM, Issac B, Jackson R, Jensen MA, Joshi S, Kadam A, Khurana A, Kim KMJ, Kraft VE, Li S, Lichtenberg TM, Lodato J, Lolla L, Martinov P, Mazzone JA, Miller DP, Miller I, Miller JS, Miyauchi K, Murphy MW, Nullet T, Ogwara RO, Ortuño FM, Pedrosa J, Pham PL, Popov MY, Porter JJ, Powell R, Rademacher K, Reid CP, Rich S, Rogel B, Sahni H, Savage JH, Schmitt KA, Simmons TJ, Sislow J, Spring J, Stein L, Sullivan S, Tang Y, Thiagarajan M, Troyer HD, Wang C, Wang Z, West BL, Wilmer A, Wilson S, Wu K, Wysocki WP, Xiang L, Yamada JT, Yang L, Yu C, Yung CK, Zenklusen JC, Zhang J, Zhang Z, Zhao Y, Zubair A, Staudt LM, Grossman RL. Author Correction: The NCI Genomic Data Commons. Nat Genet. 2021 Jun;53(6):935. doi: 10.1038/s41588-021-00883-2. PMID: 34007079.
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Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma.

Cancer cell

Robertson AG, Shih J, Yau C, Gibb EA, Oba J, Mungall KL, Hess JM, Uzunangelov V, Walter V, Danilova L, Lichtenberg TM, Kucherlapati M, Kimes PK, Tang M, Penson A, Babur O, Akbani R, Bristow CA, Hoadley KA, Iype L, Chang MT, Cherniack AD, Benz C, Mills GB, Verhaak RGW, Griewank KG, Felau I, Zenklusen JC, Gershenwald JE, Schoenfield L, Lazar AJ, Abdel-Rahman MH, Roman-Roman S, Stern MH, Cebulla CM, Williams MD, Jager MJ, Coupland SE, Esmaeli B, Kandoth C, Woodman SE.
PMID: 29316429
Cancer Cell. 2018 Jan 08;33(1):151. doi: 10.1016/j.ccell.2017.12.013.

No abstract available.

Cite
Robertson AG, Shih J, Yau C, et al. Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma. Cancer Cell. 2018;33(1):151doi: 10.1016/j.ccell.2017.12.013.
Robertson, A. G., Shih, J., Yau, C., Gibb, E. A., Oba, J., Mungall, K. L., Hess, J. M., Uzunangelov, V., Walter, V., Danilova, L., Lichtenberg, T. M., Kucherlapati, M., Kimes, P. K., Tang, M., Penson, A., Babur, O., Akbani, R., Bristow, C. A., Hoadley, K. A., Iype, L., Chang, M. T., Cherniack, A. D., Benz, C., Mills, G. B., Verhaak, R. G. W., Griewank, K. G., Felau, I., Zenklusen, J. C., Gershenwald, J. E., Schoenfield, L., Lazar, A. J., Abdel-Rahman, M. H., Roman-Roman, S., Stern, M. H., Cebulla, C. M., Williams, M. D., Jager, M. J., Coupland, S. E., Esmaeli, B., Kandoth, C., & Woodman, S. E. (2018). Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma. Cancer cell, 33(1), 151. https://doi.org/10.1016/j.ccell.2017.12.013
Robertson, A Gordon, et al. "Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma." Cancer cell vol. 33,1 (2018): 151. doi: https://doi.org/10.1016/j.ccell.2017.12.013
Robertson AG, Shih J, Yau C, Gibb EA, Oba J, Mungall KL, Hess JM, Uzunangelov V, Walter V, Danilova L, Lichtenberg TM, Kucherlapati M, Kimes PK, Tang M, Penson A, Babur O, Akbani R, Bristow CA, Hoadley KA, Iype L, Chang MT, Cherniack AD, Benz C, Mills GB, Verhaak RGW, Griewank KG, Felau I, Zenklusen JC, Gershenwald JE, Schoenfield L, Lazar AJ, Abdel-Rahman MH, Roman-Roman S, Stern MH, Cebulla CM, Williams MD, Jager MJ, Coupland SE, Esmaeli B, Kandoth C, Woodman SE. Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma. Cancer Cell. 2018 Jan 08;33(1):151. doi: 10.1016/j.ccell.2017.12.013. PMID: 29316429.
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Point-of-care coagulation management algorithms during ECMO support: are we there yet?.

Minerva anestesiologica

Bolliger D, Zenklusen U, Tanaka KA.
PMID: 27028451
Minerva Anestesiol. 2016 Sep;82(9):1000-9. Epub 2016 Mar 30.

Haemorrhagic and thromboembolic events are common and the main cause for morbidity and mortality in patients treated with extracorporeal membrane oxygenation (ECMO). Monitoring of an adequate anticoagulation is, therefore, essential in patients during ECMO therapy. This review aims to...

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Bolliger D, Zenklusen U, Tanaka KA. Point-of-care coagulation management algorithms during ECMO support: are we there yet?. Minerva Anestesiol. 2016;82(9):1000-9
Bolliger, D., Zenklusen, U., & Tanaka, K. A. (2016). Point-of-care coagulation management algorithms during ECMO support: are we there yet?. Minerva anestesiologica, 82(9), 1000-9.
Bolliger, Daniel, et al. "Point-of-care coagulation management algorithms during ECMO support: are we there yet?." Minerva anestesiologica vol. 82,9 (2016): 1000-9.
Bolliger D, Zenklusen U, Tanaka KA. Point-of-care coagulation management algorithms during ECMO support: are we there yet?. Minerva Anestesiol. 2016 Sep;82(9):1000-9. Epub 2016 Mar 30. PMID: 27028451.
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[Low health literacy: barrier to optimal care].

Revue medicale suisse

Zenklusen S, Bischoff T, Panese F, Bodenmann P.
PMID: 22662631
Rev Med Suisse. 2012 May 09;8(340):1016-21.

Health literacy is defined as "the degree to which individuals have the capacity to obtain, process, and understand basic health information and services needed to make appropriate health decisions." Low health literacy mainly affects certain populations at risk limiting...

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Zenklusen S, Bischoff T, Panese F, et al. Compétences en santé déficientes: obstacle à une prise en charge optimale. [Low health literacy: barrier to optimal care]. Rev Med Suisse. 2012;8(340):1016-21
Zenklusen, S., Bischoff, T., Panese, F., & Bodenmann, P. (2012). Compétences en santé déficientes: obstacle à une prise en charge optimale. [Low health literacy: barrier to optimal care]. Revue medicale suisse, 8(340), 1016-21.
Zenklusen, S, et al. "Compétences en santé déficientes: obstacle à une prise en charge optimale." [Low health literacy: barrier to optimal care]. Revue medicale suisse vol. 8,340 (2012): 1016-21.
Zenklusen S, Bischoff T, Panese F, Bodenmann P. Compétences en santé déficientes: obstacle à une prise en charge optimale. [Low health literacy: barrier to optimal care]. Rev Med Suisse. 2012 May 09;8(340):1016-21. French. PMID: 22662631.
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Imaging real-time gene expression in Mammalian cells with single-transcript resolution.

CSH protocols

Wells AL, Condeelis JS, Singer RH, Zenklusen D.
PMID: 21356977
CSH Protoc. 2007 Nov 01;2007:pdb.prot4869. doi: 10.1101/pdb.prot4869.

INTRODUCTIONThe MS2 system provides optimal sensitivity for single-molecule detection in cells. It requires two genetically encoded moieties: a reporter mRNA that contains MS2 binding site (MBS) stem loops and a fluorescent MS2 coat protein (MCP-xFP) that binds to the...

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Wells AL, Condeelis JS, Singer RH, et al. Imaging real-time gene expression in Mammalian cells with single-transcript resolution. CSH Protoc. 2007;2007:pdb.prot4869doi: 10.1101/pdb.prot4869.
Wells, A. L., Condeelis, J. S., Singer, R. H., & Zenklusen, D. (2007). Imaging real-time gene expression in Mammalian cells with single-transcript resolution. CSH protocols, 2007pdb.prot4869. https://doi.org/10.1101/pdb.prot4869
Wells, Amber L, et al. "Imaging real-time gene expression in Mammalian cells with single-transcript resolution." CSH protocols vol. 2007 (2007): pdb.prot4869. doi: https://doi.org/10.1101/pdb.prot4869
Wells AL, Condeelis JS, Singer RH, Zenklusen D. Imaging real-time gene expression in Mammalian cells with single-transcript resolution. CSH Protoc. 2007 Nov 01;2007:pdb.prot4869. doi: 10.1101/pdb.prot4869. PMID: 21356977; PMCID: PMC4949394.
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Integrative modeling identifies genetic ancestry-associated molecular correlates in human cancer.

STAR protocols

Robertson AG, Yau C, Carrot-Zhang J, Damrauer JS, Knijnenburg TA, Chambwe N, Hoadley KA, Kemal A, Zenklusen JC, Cherniack AD, Beroukhim R, Zhou W.
PMID: 33982016
STAR Protoc. 2021 Apr 19;2(2):100483. doi: 10.1016/j.xpro.2021.100483. eCollection 2021 Jun 18.

Cellular and molecular aberrations contribute to the disparity of human cancer incidence and etiology between ancestry groups. Multiomics profiling in The Cancer Genome Atlas (TCGA) allows for querying of the molecular underpinnings of ancestry-specific discrepancies in human cancer. Here,...

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Robertson AG, Yau C, Carrot-Zhang J, et al. Integrative modeling identifies genetic ancestry-associated molecular correlates in human cancer. STAR Protoc. 2021;2(2):100483doi: 10.1016/j.xpro.2021.100483.
Robertson, A. G., Yau, C., Carrot-Zhang, J., Damrauer, J. S., Knijnenburg, T. A., Chambwe, N., Hoadley, K. A., Kemal, A., Zenklusen, J. C., Cherniack, A. D., Beroukhim, R., & Zhou, W. (2021). Integrative modeling identifies genetic ancestry-associated molecular correlates in human cancer. STAR protocols, 2(2), 100483. https://doi.org/10.1016/j.xpro.2021.100483
Robertson, A Gordon, et al. "Integrative modeling identifies genetic ancestry-associated molecular correlates in human cancer." STAR protocols vol. 2,2 (2021): 100483. doi: https://doi.org/10.1016/j.xpro.2021.100483
Robertson AG, Yau C, Carrot-Zhang J, Damrauer JS, Knijnenburg TA, Chambwe N, Hoadley KA, Kemal A, Zenklusen JC, Cherniack AD, Beroukhim R, Zhou W. Integrative modeling identifies genetic ancestry-associated molecular correlates in human cancer. STAR Protoc. 2021 Apr 19;2(2):100483. doi: 10.1016/j.xpro.2021.100483. eCollection 2021 Jun 18. PMID: 33982016; PMCID: PMC8082263.
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Case Report: Left Ventricular Unloading Using a Mechanical CPR Device in a Prolonged Accidental Hypothermic Cardiac Arrest Treated by VA-ECMO - a Novel Approach.

Frontiers in cardiovascular medicine

Amacher SA, Quitt J, Hammel E, Zenklusen U, Darwisch A, Siegemund M.
PMID: 34250052
Front Cardiovasc Med. 2021 Jun 24;8:707663. doi: 10.3389/fcvm.2021.707663. eCollection 2021.

We recently treated a 36-year-old previously healthy male with a prolonged hypothermic (lowest temperature 22.3°C) cardiac arrest after an alcohol intoxication with a return of spontaneous circulation after 230min of mechanical cardiopulmonary resuscitation and rewarming by veno-arterial ECMO with...

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Amacher SA, Quitt J, Hammel E, et al. Case Report: Left Ventricular Unloading Using a Mechanical CPR Device in a Prolonged Accidental Hypothermic Cardiac Arrest Treated by VA-ECMO - a Novel Approach. Front Cardiovasc Med. 2021;8:707663doi: 10.3389/fcvm.2021.707663.
Amacher, S. A., Quitt, J., Hammel, E., Zenklusen, U., Darwisch, A., & Siegemund, M. (2021). Case Report: Left Ventricular Unloading Using a Mechanical CPR Device in a Prolonged Accidental Hypothermic Cardiac Arrest Treated by VA-ECMO - a Novel Approach. Frontiers in cardiovascular medicine, 8707663. https://doi.org/10.3389/fcvm.2021.707663
Amacher, Simon A, et al. "Case Report: Left Ventricular Unloading Using a Mechanical CPR Device in a Prolonged Accidental Hypothermic Cardiac Arrest Treated by VA-ECMO - a Novel Approach." Frontiers in cardiovascular medicine vol. 8 (2021): 707663. doi: https://doi.org/10.3389/fcvm.2021.707663
Amacher SA, Quitt J, Hammel E, Zenklusen U, Darwisch A, Siegemund M. Case Report: Left Ventricular Unloading Using a Mechanical CPR Device in a Prolonged Accidental Hypothermic Cardiac Arrest Treated by VA-ECMO - a Novel Approach. Front Cardiovasc Med. 2021 Jun 24;8:707663. doi: 10.3389/fcvm.2021.707663. eCollection 2021. PMID: 34250052; PMCID: PMC8263907.
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Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway.

Cell reports

Carrot-Zhang J, Yao X, Devarakonda S, Deshpande A, Damrauer JS, Silva TC, Wong CK, Choi HY, Felau I, Robertson AG, Castro MAA, Bao L, Rheinbay E, Liu EM, Trieu T, Haan D, Yau C, Hinoue T, Liu Y, Shapira O, Kumar K, Mungall KL, Zhang H, June-Koo Lee J, Berger A, Gao GF, Zhitomirsky B, Liang WW, Zhou M, Moorthi S, Berger AH, Collisson EA, Zody MC, Ding L, Cherniack AD, Getz G, Elemento O, Benz CC, Stuart J, Zenklusen JC, Beroukhim R, Chang JC, Campbell JD, Hayes DN, Yang L, Laird PW, Weinstein JN, Kwiatkowski DJ, Tsao MS, Travis WD, Khurana E, Berman BP, Hoadley KA, Robine N, Meyerson M, Govindan R, Imielinski M.
PMID: 33626341
Cell Rep. 2021 Feb 23;34(8):108784. doi: 10.1016/j.celrep.2021.108784.

No abstract available.

Cite
Carrot-Zhang J, Yao X, Devarakonda S, et al. Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway. Cell Rep. 2021;34(8):108784doi: 10.1016/j.celrep.2021.108784.
Carrot-Zhang, J., Yao, X., Devarakonda, S., Deshpande, A., Damrauer, J. S., Silva, T. C., Wong, C. K., Choi, H. Y., Felau, I., Robertson, A. G., Castro, M. A. A., Bao, L., Rheinbay, E., Liu, E. M., Trieu, T., Haan, D., Yau, C., Hinoue, T., Liu, Y., Shapira, O., Kumar, K., Mungall, K. L., Zhang, H., June-Koo Lee, J., Berger, A., Gao, G. F., Zhitomirsky, B., Liang, W. W., Zhou, M., Moorthi, S., Berger, A. H., Collisson, E. A., Zody, M. C., Ding, L., Cherniack, A. D., Getz, G., Elemento, O., Benz, C. C., Stuart, J., Zenklusen, J. C., Beroukhim, R., Chang, J. C., Campbell, J. D., Hayes, D. N., Yang, L., Laird, P. W., Weinstein, J. N., Kwiatkowski, D. J., Tsao, M. S., Travis, W. D., Khurana, E., Berman, B. P., Hoadley, K. A., Robine, N., Meyerson, M., Govindan, R., & Imielinski, M. (2021). Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway. Cell reports, 34(8), 108784. https://doi.org/10.1016/j.celrep.2021.108784
Carrot-Zhang, Jian, et al. "Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway." Cell reports vol. 34,8 (2021): 108784. doi: https://doi.org/10.1016/j.celrep.2021.108784
Carrot-Zhang J, Yao X, Devarakonda S, Deshpande A, Damrauer JS, Silva TC, Wong CK, Choi HY, Felau I, Robertson AG, Castro MAA, Bao L, Rheinbay E, Liu EM, Trieu T, Haan D, Yau C, Hinoue T, Liu Y, Shapira O, Kumar K, Mungall KL, Zhang H, June-Koo Lee J, Berger A, Gao GF, Zhitomirsky B, Liang WW, Zhou M, Moorthi S, Berger AH, Collisson EA, Zody MC, Ding L, Cherniack AD, Getz G, Elemento O, Benz CC, Stuart J, Zenklusen JC, Beroukhim R, Chang JC, Campbell JD, Hayes DN, Yang L, Laird PW, Weinstein JN, Kwiatkowski DJ, Tsao MS, Travis WD, Khurana E, Berman BP, Hoadley KA, Robine N, Meyerson M, Govindan R, Imielinski M. Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway. Cell Rep. 2021 Feb 23;34(8):108784. doi: 10.1016/j.celrep.2021.108784. PMID: 33626341; PMCID: PMC8608252.
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