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Simulating the Transition between Gel and Liquid-Crystal Phases of Lipid Bilayers: Dependence of the Transition Temperature on the Hydration Level.

Journal of chemical theory and computation

Horta BA, de Vries AH, Hünenberger PH.
PMID: 26613501
J Chem Theory Comput. 2010 Aug 10;6(8):2488-500. doi: 10.1021/ct100200w.

Explicit-solvent molecular dynamics (MD) simulations of the monoglyceride glycerol-1-monopalmitin (GMP; bilayer patch of 2 × 6 × 6 lipids) at different hydration levels (full, half, or quarter hydration) and at different temperatures (318 to 338 K) are reported. The...

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Horta BA, de Vries AH, Hünenberger PH. Simulating the Transition between Gel and Liquid-Crystal Phases of Lipid Bilayers: Dependence of the Transition Temperature on the Hydration Level. J Chem Theory Comput. 2010;6(8):2488-500doi: 10.1021/ct100200w.
Horta, B. A., de Vries, A. H., & Hünenberger, P. H. (2010). Simulating the Transition between Gel and Liquid-Crystal Phases of Lipid Bilayers: Dependence of the Transition Temperature on the Hydration Level. Journal of chemical theory and computation, 6(8), 2488-500. https://doi.org/10.1021/ct100200w
Horta, Bruno A C, et al. "Simulating the Transition between Gel and Liquid-Crystal Phases of Lipid Bilayers: Dependence of the Transition Temperature on the Hydration Level." Journal of chemical theory and computation vol. 6,8 (2010): 2488-500. doi: https://doi.org/10.1021/ct100200w
Horta BA, de Vries AH, Hünenberger PH. Simulating the Transition between Gel and Liquid-Crystal Phases of Lipid Bilayers: Dependence of the Transition Temperature on the Hydration Level. J Chem Theory Comput. 2010 Aug 10;6(8):2488-500. doi: 10.1021/ct100200w. PMID: 26613501.
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An Amphotericin B Derivative Equally Potent to Amphotericin B and with Increased Safety.

PloS one

Antillón A, de Vries AH, Espinosa-Caballero M, Falcón-González JM, Flores Romero D, González-Damián J, Jiménez-Montejo FE, León-Buitimea A, López-Ortiz M, Magaña R, Marrink SJ, Morales-Nava R, Periole X, Reyes-Esparza J, Rodríguez Lozada J, Santiago-Angelino TM, Vargas González MC, Regla I, Carrillo-Tripp M, Fernández-Zertuche M, Rodríguez-Fragoso L, Ortega-Blake I.
PMID: 27683101
PLoS One. 2016 Sep 28;11(9):e0162171. doi: 10.1371/journal.pone.0162171. eCollection 2016.

Amphotericin B is the most potent antimycotic known to date. However due to its large collateral toxicity, its use, although long standing, had been limited. Many attempts have been made to produce derivatives with reduced collateral damage. The molecular...

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Antillón A, de Vries AH, Espinosa-Caballero M, et al. An Amphotericin B Derivative Equally Potent to Amphotericin B and with Increased Safety. PLoS One. 2016;11(9):e0162171doi: 10.1371/journal.pone.0162171.
Antillón, A., de Vries, A. H., Espinosa-Caballero, M., Falcón-González, J. M., Flores Romero, D., González-Damián, J., Jiménez-Montejo, F. E., León-Buitimea, A., López-Ortiz, M., Magaña, R., Marrink, S. J., Morales-Nava, R., Periole, X., Reyes-Esparza, J., Rodríguez Lozada, J., Santiago-Angelino, T. M., Vargas González, M. C., Regla, I., Carrillo-Tripp, M., Fernández-Zertuche, M., Rodríguez-Fragoso, L., & Ortega-Blake, I. (2016). An Amphotericin B Derivative Equally Potent to Amphotericin B and with Increased Safety. PloS one, 11(9), e0162171. https://doi.org/10.1371/journal.pone.0162171
Antillón, Armando, et al. "An Amphotericin B Derivative Equally Potent to Amphotericin B and with Increased Safety." PloS one vol. 11,9 (2016): e0162171. doi: https://doi.org/10.1371/journal.pone.0162171
Antillón A, de Vries AH, Espinosa-Caballero M, Falcón-González JM, Flores Romero D, González-Damián J, Jiménez-Montejo FE, León-Buitimea A, López-Ortiz M, Magaña R, Marrink SJ, Morales-Nava R, Periole X, Reyes-Esparza J, Rodríguez Lozada J, Santiago-Angelino TM, Vargas González MC, Regla I, Carrillo-Tripp M, Fernández-Zertuche M, Rodríguez-Fragoso L, Ortega-Blake I. An Amphotericin B Derivative Equally Potent to Amphotericin B and with Increased Safety. PLoS One. 2016 Sep 28;11(9):e0162171. doi: 10.1371/journal.pone.0162171. eCollection 2016. PMID: 27683101; PMCID: PMC5040443.
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Ground beetle species in heathland fragments in relation to survival, dispersal, and habitat preference.

Oecologia

de Vries HH, den Boer PJ, van Dijk TS.
PMID: 28307261
Oecologia. 1996 Aug;107(3):332-342. doi: 10.1007/BF00328449.

Local numbers of ground beetle species of heathland appeared to be significantly associated with size of total area, whereas such relationships were not found for the total number of ground beetle species and eurytopic ground beetle species. Presence of...

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de Vries HH, den Boer PJ, van Dijk TS. Ground beetle species in heathland fragments in relation to survival, dispersal, and habitat preference. Oecologia. 1996;107(3):332-342doi: 10.1007/BF00328449.
de Vries, H. H., den Boer, P. J., & van Dijk, T. S. (1996). Ground beetle species in heathland fragments in relation to survival, dispersal, and habitat preference. Oecologia, 107(3), 332-342. https://doi.org/10.1007/BF00328449
de Vries, H H, et al. "Ground beetle species in heathland fragments in relation to survival, dispersal, and habitat preference." Oecologia vol. 107,3 (1996): 332-342. doi: https://doi.org/10.1007/BF00328449
de Vries HH, den Boer PJ, van Dijk TS. Ground beetle species in heathland fragments in relation to survival, dispersal, and habitat preference. Oecologia. 1996 Aug;107(3):332-342. doi: 10.1007/BF00328449. PMID: 28307261.
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Synthesis and application in asymmetric C-C bond formation of solution phase ligand libraries of monodentate phosphoramidites.

Organic & biomolecular chemistry

Duursma A, Lefort L, Boogers JA, de Vries AH, de Vries JG, Minnaard AJ, Feringa BL.
PMID: 15188032
Org Biomol Chem. 2004 Jun 21;2(12):1682-4. doi: 10.1039/b404996a. Epub 2004 May 25.

A library of 96 unique monodentate phosphoramidite ligands has been synthesized in solution and used in the asymmetric conjugate addition of potassium vinyltrifluoroborate to enones resulting in up to 88% ee.

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Duursma A, Lefort L, Boogers JA, et al. Synthesis and application in asymmetric C-C bond formation of solution phase ligand libraries of monodentate phosphoramidites. Org Biomol Chem. 2004;2(12):1682-4doi: 10.1039/b404996a.
Duursma, A., Lefort, L., Boogers, J. A., de Vries, A. H., de Vries, J. G., Minnaard, A. J., & Feringa, B. L. (2004). Synthesis and application in asymmetric C-C bond formation of solution phase ligand libraries of monodentate phosphoramidites. Organic & biomolecular chemistry, 2(12), 1682-4. https://doi.org/10.1039/b404996a
Duursma, Ate, et al. "Synthesis and application in asymmetric C-C bond formation of solution phase ligand libraries of monodentate phosphoramidites." Organic & biomolecular chemistry vol. 2,12 (2004): 1682-4. doi: https://doi.org/10.1039/b404996a
Duursma A, Lefort L, Boogers JA, de Vries AH, de Vries JG, Minnaard AJ, Feringa BL. Synthesis and application in asymmetric C-C bond formation of solution phase ligand libraries of monodentate phosphoramidites. Org Biomol Chem. 2004 Jun 21;2(12):1682-4. doi: 10.1039/b404996a. Epub 2004 May 25. PMID: 15188032.
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Improving conversion and enantioselectivity in hydrogenation by combining different monodentate phosphoramidites; a new combinatorial approach in asymmetric catalysis.

Organic & biomolecular chemistry

Peña D, Minnaard AJ, Boogers JA, de Vries AH, de Vries JG, Feringa BL.
PMID: 12926377
Org Biomol Chem. 2003 Apr 07;1(7):1087-9. doi: 10.1039/b302097e.

The combination of monodentate ligands in the rhodium-catalysed enantioselective hydrogenation enables a new approach when searching for the optimal activity and enantioselectivity in catalysis.

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Peña D, Minnaard AJ, Boogers JA, et al. Improving conversion and enantioselectivity in hydrogenation by combining different monodentate phosphoramidites; a new combinatorial approach in asymmetric catalysis. Org Biomol Chem. 2003;1(7):1087-9doi: 10.1039/b302097e.
Peña, D., Minnaard, A. J., Boogers, J. A., de Vries, A. H., de Vries, J. G., & Feringa, B. L. (2003). Improving conversion and enantioselectivity in hydrogenation by combining different monodentate phosphoramidites; a new combinatorial approach in asymmetric catalysis. Organic & biomolecular chemistry, 1(7), 1087-9. https://doi.org/10.1039/b302097e
Peña, Diego, et al. "Improving conversion and enantioselectivity in hydrogenation by combining different monodentate phosphoramidites; a new combinatorial approach in asymmetric catalysis." Organic & biomolecular chemistry vol. 1,7 (2003): 1087-9. doi: https://doi.org/10.1039/b302097e
Peña D, Minnaard AJ, Boogers JA, de Vries AH, de Vries JG, Feringa BL. Improving conversion and enantioselectivity in hydrogenation by combining different monodentate phosphoramidites; a new combinatorial approach in asymmetric catalysis. Org Biomol Chem. 2003 Apr 07;1(7):1087-9. doi: 10.1039/b302097e. PMID: 12926377.
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Selective Pd-catalyzed oxidative coupling of anilides with olefins through C-H bond activation at room temperature.

Journal of the American Chemical Society

Boele MD, van Strijdonck GP, de Vries AH, Kamer PC, de Vries JG, van Leeuwen PW.
PMID: 11853427
J Am Chem Soc. 2002 Feb 27;124(8):1586-7. doi: 10.1021/ja0176907.

Using a high-throughput experimentation approach we found a selective and mild Pd-catalyzed oxidative coupling reaction between anilide derivatives and acrylates that occurs through ortho C-H bond activation. The reaction is carried out in an acidic environment and occurs even...

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Boele MD, van Strijdonck GP, de Vries AH, et al. Selective Pd-catalyzed oxidative coupling of anilides with olefins through C-H bond activation at room temperature. J Am Chem Soc. 2002;124(8):1586-7doi: 10.1021/ja0176907.
Boele, M. D., van Strijdonck, G. P., de Vries, A. H., Kamer, P. C., de Vries, J. G., & van Leeuwen, P. W. (2002). Selective Pd-catalyzed oxidative coupling of anilides with olefins through C-H bond activation at room temperature. Journal of the American Chemical Society, 124(8), 1586-7. https://doi.org/10.1021/ja0176907
Boele, Maarten D K, et al. "Selective Pd-catalyzed oxidative coupling of anilides with olefins through C-H bond activation at room temperature." Journal of the American Chemical Society vol. 124,8 (2002): 1586-7. doi: https://doi.org/10.1021/ja0176907
Boele MD, van Strijdonck GP, de Vries AH, Kamer PC, de Vries JG, van Leeuwen PW. Selective Pd-catalyzed oxidative coupling of anilides with olefins through C-H bond activation at room temperature. J Am Chem Soc. 2002 Feb 27;124(8):1586-7. doi: 10.1021/ja0176907. PMID: 11853427.
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Equine arteritis virus.

Theriogenology

Glaser AL, Chirnside ED, Horzinek MC, de Vries AA.
PMID: 16728076
Theriogenology. 1997 Apr 15;47(6):1275-95. doi: 10.1016/s0093-691x(97)00107-6.

Equine arteritis virus (EAV) is a small, enveloped, positive-stranded RNA virus, in the family Arteriviridae , W.H.ich can infect both horses and donkeys. While the majority of EAV infections are asymptomatic, acutely infected animals may develop a wide range...

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Glaser AL, Chirnside ED, Horzinek MC, et al. Equine arteritis virus. Theriogenology. 1997;47(6):1275-95doi: 10.1016/s0093-691x(97)00107-6.
Glaser, A. L., Chirnside, E. D., Horzinek, M. C., & de Vries, A. A. (1997). Equine arteritis virus. Theriogenology, 47(6), 1275-95. https://doi.org/10.1016/s0093-691x(97)00107-6
Glaser, A L, et al. "Equine arteritis virus." Theriogenology vol. 47,6 (1997): 1275-95. doi: https://doi.org/10.1016/s0093-691x(97)00107-6
Glaser AL, Chirnside ED, Horzinek MC, de Vries AA. Equine arteritis virus. Theriogenology. 1997 Apr 15;47(6):1275-95. doi: 10.1016/s0093-691x(97)00107-6. PMID: 16728076; PMCID: PMC7127492.
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Isolation of axolemma-enriched fractions from bovine central nervous system.

Neuroscience letters

De Vries GH.
PMID: 19604872
Neurosci Lett. 1976 Oct;3(3):117-22. doi: 10.1016/0304-3940(76)90079-3.

Axolemmal fractions are isolated by discontinuous gradient centrifugation of purified myelinated axons which have been osmotically shocked to yield axons, myelin and axolemma. The axolemmal fractions are enriched in surface membrane marker enzymes such as Na(+),K(+)-activated ATPase, 5'-nucleotidase and...

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De Vries GH. Isolation of axolemma-enriched fractions from bovine central nervous system. Neurosci Lett. 1976;3(3):117-22doi: 10.1016/0304-3940(76)90079-3.
De Vries, G. H. (1976). Isolation of axolemma-enriched fractions from bovine central nervous system. Neuroscience letters, 3(3), 117-22. https://doi.org/10.1016/0304-3940(76)90079-3
De Vries, G H. "Isolation of axolemma-enriched fractions from bovine central nervous system." Neuroscience letters vol. 3,3 (1976): 117-22. doi: https://doi.org/10.1016/0304-3940(76)90079-3
De Vries GH. Isolation of axolemma-enriched fractions from bovine central nervous system. Neurosci Lett. 1976 Oct;3(3):117-22. doi: 10.1016/0304-3940(76)90079-3. PMID: 19604872.
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The role of major genes and DNA technology in selection for meat quality in pigs.

Meat science

de Vries AG, Sosnicki A, Garnier JP, Plastow GS.
PMID: 22060715
Meat Sci. 1998;49:S245-55.

The aim of this paper is to discuss the role of major genes and DNA technology in selection for meat quality in modern breeding schemes. An overview of major genes, including genes that affect water-binding, colour, marbling, boar taint...

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de Vries AG, Sosnicki A, Garnier JP, et al. The role of major genes and DNA technology in selection for meat quality in pigs. Meat Sci. 1998;49:S245-55
de Vries, A. G., Sosnicki, A., Garnier, J. P., & Plastow, G. S. (1998). The role of major genes and DNA technology in selection for meat quality in pigs. Meat science, 49S245-55.
de Vries, A G, et al. "The role of major genes and DNA technology in selection for meat quality in pigs." Meat science vol. 49 (1998): S245-55.
de Vries AG, Sosnicki A, Garnier JP, Plastow GS. The role of major genes and DNA technology in selection for meat quality in pigs. Meat Sci. 1998;49:S245-55. PMID: 22060715.
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The quest for an atrium-specific biomarker.

Netherlands heart journal : monthly journal of the Netherlands Society of Cardiology and the Netherlands Heart Foundation

van der Laarse A, de Vries AA.
PMID: 21475408
Neth Heart J. 2011 Mar;19(3):151-152. doi: 10.1007/s12471-011-0082-8. Epub 2011 Feb 12.

No abstract available.

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van der Laarse A, de Vries AA. The quest for an atrium-specific biomarker. Neth Heart J. 2011;19(3):151-152doi: 10.1007/s12471-011-0082-8.
van der Laarse, A., & de Vries, A. A. (2011). The quest for an atrium-specific biomarker. Netherlands heart journal : monthly journal of the Netherlands Society of Cardiology and the Netherlands Heart Foundation, 19(3), 151-152. https://doi.org/10.1007/s12471-011-0082-8
van der Laarse, A, and de Vries, A A F. "The quest for an atrium-specific biomarker." Netherlands heart journal : monthly journal of the Netherlands Society of Cardiology and the Netherlands Heart Foundation vol. 19,3 (2011): 151-152. doi: https://doi.org/10.1007/s12471-011-0082-8
van der Laarse A, de Vries AA. The quest for an atrium-specific biomarker. Neth Heart J. 2011 Mar;19(3):151-152. doi: 10.1007/s12471-011-0082-8. Epub 2011 Feb 12. PMID: 21475408; PMCID: PMC3047704.
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Generation of Helper Plasmids Encoding Mutant Adeno-associated Virus Type 2 Capsid Proteins with Increased Resistance against Proteasomal Degradation.

Iranian journal of basic medical sciences

Ahmadiankia N, Neshati V, Neshati Z, Swildens J, de Vries AA.
PMID: 23997910
Iran J Basic Med Sci. 2013 Jul;16(7):813-21.

OBJECTIVE(S): Adeno-associated virus type 2 (AAV2) vectors are widely used for both experimental and clinical gene therapy. A recent research has shown that the performance of these vectors can be greatly improved by substitution of specific surface-exposed tyrosine residues...

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Ahmadiankia N, Neshati V, Neshati Z, et al. Generation of Helper Plasmids Encoding Mutant Adeno-associated Virus Type 2 Capsid Proteins with Increased Resistance against Proteasomal Degradation. Iran J Basic Med Sci. 2013;16(7):813-21
Ahmadiankia, N., Neshati, V., Neshati, Z., Swildens, J., & de Vries, A. A. (2013). Generation of Helper Plasmids Encoding Mutant Adeno-associated Virus Type 2 Capsid Proteins with Increased Resistance against Proteasomal Degradation. Iranian journal of basic medical sciences, 16(7), 813-21.
Ahmadiankia, Naghmeh, et al. "Generation of Helper Plasmids Encoding Mutant Adeno-associated Virus Type 2 Capsid Proteins with Increased Resistance against Proteasomal Degradation." Iranian journal of basic medical sciences vol. 16,7 (2013): 813-21.
Ahmadiankia N, Neshati V, Neshati Z, Swildens J, de Vries AA. Generation of Helper Plasmids Encoding Mutant Adeno-associated Virus Type 2 Capsid Proteins with Increased Resistance against Proteasomal Degradation. Iran J Basic Med Sci. 2013 Jul;16(7):813-21. PMID: 23997910; PMCID: PMC3758051.
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Experimental and molecular dynamics characterization of dense microemulsion systems: morphology, conductivity and SAXS.

Soft matter

Negro E, Latsuzbaia R, de Vries AH, Koper GJ.
PMID: 25254629
Soft Matter. 2014 Nov 21;10(43):8685-97. doi: 10.1039/c4sm01763c.

Microemulsions are exciting systems that are promising as tuneable self-assembling templating reaction vessels at the nanoscale. Determination of the nano-structure of microemulsions is, however, not trivial, and there are fundamental questions regarding their design. We were able to reproduce...

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Negro E, Latsuzbaia R, de Vries AH, et al. Experimental and molecular dynamics characterization of dense microemulsion systems: morphology, conductivity and SAXS. Soft Matter. 2014;10(43):8685-97doi: 10.1039/c4sm01763c.
Negro, E., Latsuzbaia, R., de Vries, A. H., & Koper, G. J. (2014). Experimental and molecular dynamics characterization of dense microemulsion systems: morphology, conductivity and SAXS. Soft matter, 10(43), 8685-97. https://doi.org/10.1039/c4sm01763c
Negro, E, et al. "Experimental and molecular dynamics characterization of dense microemulsion systems: morphology, conductivity and SAXS." Soft matter vol. 10,43 (2014): 8685-97. doi: https://doi.org/10.1039/c4sm01763c
Negro E, Latsuzbaia R, de Vries AH, Koper GJ. Experimental and molecular dynamics characterization of dense microemulsion systems: morphology, conductivity and SAXS. Soft Matter. 2014 Nov 21;10(43):8685-97. doi: 10.1039/c4sm01763c. PMID: 25254629.
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Showing 1 to 12 of 166 entries