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Showing 1 to 12 of 5333 entries
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gKaKs: the pipeline for genome-level Ka/Ks calculation

pipeline programs

Zhang C, Wang J, Long M.
GSID: RqQsxVdoWp0J
C Zhang, J Wang, M Long, C Fan - Bioinformatics, 2013 - academic.oup.com

… Summary: gKaKs is a codon-based genome-level Ka/Ks computation pipeline developed and based on programs from four widely used packages: BLAT, BLASTALL (including bl2seq, formatdb and fastacmd), PAML (including codeml and yn00) and KaKs_Calculator (including …

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Zhang, C., Wang, J., Long, M., & Fan, C. (2013). gKaKs: the pipeline for genome-level Ka/Ks calculation. Bioinformatics, 29(5), 645-646.
Zhang, Chengjun, et al. "gKaKs: the pipeline for genome-level Ka/Ks calculation." Bioinformatics 29.5 (2013): 645-646.
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Developing citizen-scientists: Effects of an inquiry-based science curriculum on STEM and civic engagement

science curriculum

Condon M, Wichowsky A.
GSID: UiSuW5WwrCcJ
M Condon, A Wichowsky - The Elementary School Journal, 2018 - journals.uchicago.edu

… in this article is a curriculum called STEMhero; it was developed based on the citizen science model. The curriculum guides students through the process of collaborative scientific inquiry focused on solving a community problem. The STEMhero curriculum follows...

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Condon, M., & Wichowsky, A. (2018). Developing citizen-scientists: Effects of an inquiry-based science curriculum on STEM and civic engagement. The Elementary School Journal, 119(2), 196-222.
Condon, Meghan, and Amber Wichowsky. "Developing citizen-scientists: Effects of an inquiry-based science curriculum on STEM and civic engagement." The Elementary School Journal 119.2 (2018): 196-222.
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The changing wealth of nations 2018: Building a sustainable future

Build and Broaden 3.0 AND Program Evaluation

Wodon Q.
GSID: ALAAYNkBA2UJ
GM Lange, Q Wodon, K Carey - 2018 - books.google.com

Countries regularly track gross domestic product (GDP) as an indicator of their economic progress, but not wealth—the assets such as infrastructure, forests, minerals, and human …

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Lange, G. M., Wodon, Q., & Carey, K. (Eds.). (2018). The changing wealth of nations 2018: Building a sustainable future. World Bank Publications.
Lange, Glenn-Marie, Quentin Wodon, and Kevin Carey, eds. The changing wealth of nations 2018: Building a sustainable future. World Bank Publications, 2018.
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Unexpected correlations between gene expression and codon usage bias from microarray data for the whole Escherichia coli K‐12 genome

k-12

Dos M, Wernisch L.
GSID: n2xp-IRnE3wJ
M Dos Reis, L Wernisch, R Savva - Nucleic acids research, 2003 - academic.oup.com

… The genomic sequence for E.coli K‐12 MG1655 was obtained from GenBank accession no. U00096 (23). All open reading frames listed … sequence of E.coli K‐12 was determined. However, all of the following results can also be obtained by...

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Dos Reis, M., Wernisch, L., & Savva, R. (2003). Unexpected correlations between gene expression and codon usage bias from microarray data for the whole Escherichia coli K‐12 genome. Nucleic acids research, 31(23), 6976-6985.
Dos Reis, Mario, Lorenz Wernisch, and Renos Savva. "Unexpected correlations between gene expression and codon usage bias from microarray data for the whole Escherichia coli K‐12 genome." Nucleic acids research 31.23 (2003): 6976-6985.
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Selenoprofiles: A computational pipeline for annotation of selenoproteins

pipeline programs

Santesmasses D, Mariotti M, Guigó R.
GSID: kaUoJDSakhYJ
D Santesmasses, M Mariotti, R Guigó - Selenoproteins, 2018 - Springer

… programs fail to predict Sec codons, and selenoproteins are usually misannotated in protein databases and genome projects. Selenoprofiles is a computational pipeline able … Selenoprofiles is a pipeline combining a number of “slave” programs for homology-based gene finding,...

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Santesmasses, D., Mariotti, M., & Guigó, R. (2018). Selenoprofiles: A computational pipeline for annotation of selenoproteins. In Selenoproteins (pp. 17-28). Humana Press, New York, NY.
Santesmasses, Didac, Marco Mariotti, and Roderic Guigó. "Selenoprofiles: A computational pipeline for annotation of selenoproteins." Selenoproteins. Humana Press, New York, NY, 2018. 17-28.
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Faculty development and student learning: Assessing the connections

faculty

Condon W.
GSID: J3m3NheWfIMJ
W Condon, ER Iverson, CA Manduca, C Rutz, G Willett - 2016 - books.google.com

… how students' learning is affected by faculty members' efforts to become better teachers. … of faculty development and its effectiveness, the authors show that faculty participation in …

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Condon, W., Iverson, E. R., Manduca, C. A., Rutz, C., & Willett, G. (2016). Faculty development and student learning: Assessing the connections. Indiana University Press.
Condon, William, et al. Faculty development and student learning: Assessing the connections. Indiana University Press, 2016.
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Children using robotics for engineering, science, technology, and math (CREST-M): The development and evaluation of an engaging math curriculum

STEM and underrepresented

Coxon SV, Dohrman RL, Nadler DR.
GSID: GhLXp7rYhiMJ
SV Coxon, RL Dohrman, DR Nadler - Roeper Review, 2018 - Taylor & Francis

… are underrepresented in these fields, to be proficient in STEM … women and underrepresented minorities in STEM fields … in most STEM fields, far too few Americans are pursuing STEM …

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Coxon, S. V., Dohrman, R. L., & Nadler, D. R. (2018). Children using robotics for engineering, science, technology, and math (CREST-M): The development and evaluation of an engaging math curriculum. Roeper Review, 40(2), 86-96.
Coxon, Steve V., Rebecca L. Dohrman, and Dustin R. Nadler. "Children using robotics for engineering, science, technology, and math (CREST-M): The development and evaluation of an engaging math curriculum." Roeper Review 40.2 (2018): 86-96.
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238U/235U Systematics in Terrestrial Uranium-Bearing Minerals

Geoscience Opportunities for Leadership in Diversity AND Program Evaluation

Condon DJ, Hiess J, McLean N, Noble SR.
GSID: aJdEZUcAhX8J
J Hiess, DJ Condon, N McLean, SR Noble - Science, 2012 - science.org

The present-day 238U/235U ratio has fundamental implications for uranium-lead geochronology and cosmochronology. A value of 137.88 has previously been considered invariant and has been used without uncertainty to calculate terrestrial mineral ages. We report high-precision 238U/235U measurements for a...

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Hiess, J., Condon, D. J., McLean, N., & Noble, S. R. (2012). 238U/235U systematics in terrestrial uranium-bearing minerals. Science, 335(6076), 1610-1614.
Hiess, Joe, et al. "238U/235U systematics in terrestrial uranium-bearing minerals." Science 335.6076 (2012): 1610-1614.
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Faculty professional development and student learning: What is the relationship?

faculty

Condon W.
GSID: V2V4Jrp4DxUJ
C Rutz, W Condon, ER Iverson… - … : The Magazine of …, 2012 - Taylor & Francis

… of faculty development on faculty, their teaching, and ultimately on their students' learning. Our research begins with the premise that faculty … We have been studying faculty on two …

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Rutz, C., Condon, W., Iverson, E. R., Manduca, C. A., & Willett, G. (2012). Faculty professional development and student learning: What is the relationship?. Change: The Magazine of Higher Learning, 44(3), 40-47.
Rutz, Carol, et al. "Faculty professional development and student learning: What is the relationship?." Change: The Magazine of Higher Learning 44.3 (2012): 40-47.
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CpG underrepresentation and the bacterial CpG-specific DNA methyltransferase M. MpeI

Science and underrepresentation

[No authors listed]
GSID: ga5GjDkVmIcJ
M Wojciechowski, H Czapinska… - Proceedings of the …, 2013 - National Acad Sciences

… For each species we determined CpG underrepresentation in the whole genome and in nonprotein coding (“intergenic”) regions to avoid bias from codon preferences. Although both …

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WOJCIECHOWSKI, Marek; CZAPINSKA, Honorata; BOCHTLER, Matthias. CpG underrepresentation and the bacterial CpG-specific DNA methyltransferase M. MpeI. Proceedings of the National Academy of Sciences, 2013, vol. 110, no 1, p. 105-110.
Wojciechowski, M., Czapinska, H., & Bochtler, M. (2013). CpG underrepresentation and the bacterial CpG-specific DNA methyltransferase M. MpeI. Proceedings of the National Academy of Sciences, 110(1), 105-110.
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Virus attenuation by genome-scale changes in codon pair bias

Science and underrepresented

Coleman JR, Futcher B, Papamichail D, Skiena S.
GSID: qgTjFGH3qtwJ
JR Coleman, D Papamichail, S Skiena, B Futcher… - Science, 2008 - science.org

… We now find that underrepresented codon pairs cause poor translation and attenuation in … of such tRNAs are underrepresented; our translation data are consistent with this theory. …

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Coleman, J. R., Papamichail, D., Skiena, S., Futcher, B., Wimmer, E., & Mueller, S. (2008). Virus attenuation by genome-scale changes in codon pair bias. Science, 320(5884), 1784-1787.
Coleman, J. Robert, et al. "Virus attenuation by genome-scale changes in codon pair bias." Science 320.5884 (2008): 1784-1787.
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Sex differences in the prognostic significance of KRAS codons 12 and 13, and BRAF mutations in colorectal cancer: a cohort study.

Biology of sex differences

Wangefjord S, Sundström M, Zendehrokh N, Lindquist KE, Nodin B, Jirström K, Eberhard J.
PMID: 24020794
Biol Sex Differ. 2013 Sep 10;4(1):17. doi: 10.1186/2042-6410-4-17.

BACKGROUND: Activating KRAS and BRAF mutations predict unresponsiveness to EGFR-targeting therapies in colorectal cancer (CRC), but their prognostic value needs further validation. In this study, we investigated the impact of KRAS codons 12 and 13, and BRAF mutations on...

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Wangefjord S, Sundström M, Zendehrokh N, et al. Sex differences in the prognostic significance of KRAS codons 12 and 13, and BRAF mutations in colorectal cancer: a cohort study. Biol Sex Differ. 2013;4(1):17doi: 10.1186/2042-6410-4-17.
Wangefjord, S., Sundström, M., Zendehrokh, N., Lindquist, K. E., Nodin, B., Jirström, K., & Eberhard, J. (2013). Sex differences in the prognostic significance of KRAS codons 12 and 13, and BRAF mutations in colorectal cancer: a cohort study. Biology of sex differences, 4(1), 17. https://doi.org/10.1186/2042-6410-4-17
Wangefjord, Sakarias, et al. "Sex differences in the prognostic significance of KRAS codons 12 and 13, and BRAF mutations in colorectal cancer: a cohort study." Biology of sex differences vol. 4,1 (2013): 17. doi: https://doi.org/10.1186/2042-6410-4-17
Wangefjord S, Sundström M, Zendehrokh N, Lindquist KE, Nodin B, Jirström K, Eberhard J. Sex differences in the prognostic significance of KRAS codons 12 and 13, and BRAF mutations in colorectal cancer: a cohort study. Biol Sex Differ. 2013 Sep 10;4(1):17. doi: 10.1186/2042-6410-4-17. PMID: 24020794; PMCID: PMC3846575.
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Showing 1 to 12 of 5333 entries