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Dataset of Arabidopsis plants that overexpress FT driven by a meristem-specific KNAT1 promoter.

Data in brief

Duplat-Bermúdez L, Ruiz-Medrano R, Landsman D, Mariño-Ramírez L, Xoconostle-Cázares B.
PMID: 27366785
Data Brief. 2016 Jun 08;8:520-8. doi: 10.1016/j.dib.2016.06.002. eCollection 2016 Sep.

In this dataset we integrated figures comparing leaf number and rosette diameter in three Arabidopsis FT overexpressor lines (AtFTOE) driven by KNAT1 promoter, "A member of the KNOTTED class of homeodomain proteins encoded by the STM gene of Arabidopsis"...

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Duplat-Bermúdez L, Ruiz-Medrano R, Landsman D, et al. Dataset of Arabidopsis plants that overexpress FT driven by a meristem-specific KNAT1 promoter. Data Brief. 2016;8:520-8doi: 10.1016/j.dib.2016.06.002.
Duplat-Bermúdez, L., Ruiz-Medrano, R., Landsman, D., Mariño-Ramírez, L., & Xoconostle-Cázares, B. (2016). Dataset of Arabidopsis plants that overexpress FT driven by a meristem-specific KNAT1 promoter. Data in brief, 8520-8. https://doi.org/10.1016/j.dib.2016.06.002
Duplat-Bermúdez, L, et al. "Dataset of Arabidopsis plants that overexpress FT driven by a meristem-specific KNAT1 promoter." Data in brief vol. 8 (2016): 520-8. doi: https://doi.org/10.1016/j.dib.2016.06.002
Duplat-Bermúdez L, Ruiz-Medrano R, Landsman D, Mariño-Ramírez L, Xoconostle-Cázares B. Dataset of Arabidopsis plants that overexpress FT driven by a meristem-specific KNAT1 promoter. Data Brief. 2016 Jun 08;8:520-8. doi: 10.1016/j.dib.2016.06.002. eCollection 2016 Sep. PMID: 27366785; PMCID: PMC4919726.
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Ring the BELL and tie the KNOX: roles for TALEs in gynoecium development.

Frontiers in plant science

Arnaud N, Pautot V.
PMID: 24688486
Front Plant Sci. 2014 Mar 20;5:93. doi: 10.3389/fpls.2014.00093. eCollection 2014.

Carpels are leaf-like structures that bear ovules, and thus play a crucial role in the plant life cycle. In angiosperms, carpels are the last organs produced by the floral meristem and they differentiate a specialized meristematic tissue from which...

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Arnaud N, Pautot V. Ring the BELL and tie the KNOX: roles for TALEs in gynoecium development. Front Plant Sci. 2014;5:93doi: 10.3389/fpls.2014.00093.
Arnaud, N., & Pautot, V. (2014). Ring the BELL and tie the KNOX: roles for TALEs in gynoecium development. Frontiers in plant science, 593. https://doi.org/10.3389/fpls.2014.00093
Arnaud, Nicolas, and Pautot, Véronique. "Ring the BELL and tie the KNOX: roles for TALEs in gynoecium development." Frontiers in plant science vol. 5 (2014): 93. doi: https://doi.org/10.3389/fpls.2014.00093
Arnaud N, Pautot V. Ring the BELL and tie the KNOX: roles for TALEs in gynoecium development. Front Plant Sci. 2014 Mar 20;5:93. doi: 10.3389/fpls.2014.00093. eCollection 2014. PMID: 24688486; PMCID: PMC3960571.
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Single-chain fusions of two unrelated homeodomain proteins trigger pathogenicity in Ustilago maydis.

Proceedings of the National Academy of Sciences of the United States of America

Romeis T, Kämper J, Kahmann R.
PMID: 11038599
Proc Natl Acad Sci U S A. 1997 Feb 18;94(4):1230-4. doi: 10.1073/pnas.94.4.1230.

Pathogenic and sexual development of the fungus Ustilago maydis, the causal agent of corn smut disease, is regulated by heterodimerization of two unrelated homeodomain proteins bE and bW, both encoded by the multi-allelic b mating-type locus. This complex can...

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Romeis T, Kämper J, Kahmann R. Single-chain fusions of two unrelated homeodomain proteins trigger pathogenicity in Ustilago maydis. Proc Natl Acad Sci U S A. 1997;94(4):1230-4doi: 10.1073/pnas.94.4.1230.
Romeis, T., Kämper, J., & Kahmann, R. (1997). Single-chain fusions of two unrelated homeodomain proteins trigger pathogenicity in Ustilago maydis. Proceedings of the National Academy of Sciences of the United States of America, 94(4), 1230-4. https://doi.org/10.1073/pnas.94.4.1230
Romeis, T, et al. "Single-chain fusions of two unrelated homeodomain proteins trigger pathogenicity in Ustilago maydis." Proceedings of the National Academy of Sciences of the United States of America vol. 94,4 (1997): 1230-4. doi: https://doi.org/10.1073/pnas.94.4.1230
Romeis T, Kämper J, Kahmann R. Single-chain fusions of two unrelated homeodomain proteins trigger pathogenicity in Ustilago maydis. Proc Natl Acad Sci U S A. 1997 Feb 18;94(4):1230-4. doi: 10.1073/pnas.94.4.1230. PMID: 11038599; PMCID: PMC19773.
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The Homeodomain Resource: a comprehensive collection of sequence, structure, interaction, genomic and functional information on the homeodomain protein family.

Database : the journal of biological databases and curation

Moreland RT, Ryan JF, Pan C, Baxevanis AD.
PMID: 20157477
Database (Oxford). 2009;2009:bap004. doi: 10.1093/database/bap004. Epub 2009 Apr 17.

The Homeodomain Resource is a curated collection of sequence, structure, interaction, genomic and functional information on the homeodomain family. The current version builds upon previous versions by the addition of new, complete sets of homeodomain sequences from fully sequenced...

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Moreland RT, Ryan JF, Pan C, et al. The Homeodomain Resource: a comprehensive collection of sequence, structure, interaction, genomic and functional information on the homeodomain protein family. Database (Oxford). 2009;2009:bap004doi: 10.1093/database/bap004.
Moreland, R. T., Ryan, J. F., Pan, C., & Baxevanis, A. D. (2009). The Homeodomain Resource: a comprehensive collection of sequence, structure, interaction, genomic and functional information on the homeodomain protein family. Database : the journal of biological databases and curation, 2009bap004. https://doi.org/10.1093/database/bap004
Moreland, R Travis, et al. "The Homeodomain Resource: a comprehensive collection of sequence, structure, interaction, genomic and functional information on the homeodomain protein family." Database : the journal of biological databases and curation vol. 2009 (2009): bap004. doi: https://doi.org/10.1093/database/bap004
Moreland RT, Ryan JF, Pan C, Baxevanis AD. The Homeodomain Resource: a comprehensive collection of sequence, structure, interaction, genomic and functional information on the homeodomain protein family. Database (Oxford). 2009;2009:bap004. doi: 10.1093/database/bap004. Epub 2009 Apr 17. PMID: 20157477; PMCID: PMC2790301.
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Androgen Receptor Regulates Transcription of the ZEB1 Transcription Factor.

International journal of endocrinology

Anose BM, Sanders MM.
PMID: 22190929
Int J Endocrinol. 2011;2011:903918. doi: 10.1155/2011/903918. Epub 2011 Dec 10.

The zinc finger E-box binding protein 1 (ZEB1) transcription factor belongs to a two-member family of zinc-finger homeodomain proteins involved in physiological and pathological events mostly relating to cell migration and epithelial to mesenchymal transitions (EMTs). ZEB1 (also known...

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Anose BM, Sanders MM. Androgen Receptor Regulates Transcription of the ZEB1 Transcription Factor. Int J Endocrinol. 2011;2011:903918doi: 10.1155/2011/903918.
Anose, B. M., & Sanders, M. M. (2011). Androgen Receptor Regulates Transcription of the ZEB1 Transcription Factor. International journal of endocrinology, 2011903918. https://doi.org/10.1155/2011/903918
Anose, Bynthia M, and Sanders, Michel M. "Androgen Receptor Regulates Transcription of the ZEB1 Transcription Factor." International journal of endocrinology vol. 2011 (2011): 903918. doi: https://doi.org/10.1155/2011/903918
Anose BM, Sanders MM. Androgen Receptor Regulates Transcription of the ZEB1 Transcription Factor. Int J Endocrinol. 2011;2011:903918. doi: 10.1155/2011/903918. Epub 2011 Dec 10. PMID: 22190929; PMCID: PMC3235469.
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Synergistic roles of homeodomain proteins UNC-62 homothorax and MLS-2 HMX/NKX in the specification of olfactory neurons in Caenorhabditis elegans.

Genetics

Hsieh YW, Xiong R, Chuang CF.
PMID: 34849889
Genetics. 2021 Oct 02;219(2). doi: 10.1093/genetics/iyab133.

General identity of the Caenorhabditis elegans AWC olfactory neuron pair is specified by the OTX/OTD transcription factor CEH-36 and the HMG-box transcription factor SOX-2, followed by asymmetrical differentiation of the pair into two distinct subtypes, default AWCOFF and induced...

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Hsieh YW, Xiong R, Chuang CF. Synergistic roles of homeodomain proteins UNC-62 homothorax and MLS-2 HMX/NKX in the specification of olfactory neurons in Caenorhabditis elegans. Genetics. 2021;219(2)doi: 10.1093/genetics/iyab133.
Hsieh, Y. W., Xiong, R., & Chuang, C. F. (2021). Synergistic roles of homeodomain proteins UNC-62 homothorax and MLS-2 HMX/NKX in the specification of olfactory neurons in Caenorhabditis elegans. Genetics, 219(2), . https://doi.org/10.1093/genetics/iyab133
Hsieh, Yi-Wen, et al. "Synergistic roles of homeodomain proteins UNC-62 homothorax and MLS-2 HMX/NKX in the specification of olfactory neurons in Caenorhabditis elegans." Genetics vol. 219,2 (2021). doi: https://doi.org/10.1093/genetics/iyab133
Hsieh YW, Xiong R, Chuang CF. Synergistic roles of homeodomain proteins UNC-62 homothorax and MLS-2 HMX/NKX in the specification of olfactory neurons in Caenorhabditis elegans. Genetics. 2021 Oct 02;219(2). doi: 10.1093/genetics/iyab133. PMID: 34849889; PMCID: PMC8633082.
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Different SP1 binding dynamics at individual genomic loci in human cells.

Proceedings of the National Academy of Sciences of the United States of America

Hasegawa Y, Struhl K.
PMID: 34764224
Proc Natl Acad Sci U S A. 2021 Nov 16;118(46). doi: 10.1073/pnas.2113579118.

Using a tamoxifen-inducible time-course ChIP-sequencing (ChIP-seq) approach, we show that the ubiquitous transcription factor SP1 has different binding dynamics at its target sites in the human genome. SP1 very rapidly reaches maximal binding levels at some sites, but binding...

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Hasegawa Y, Struhl K. Different SP1 binding dynamics at individual genomic loci in human cells. Proc Natl Acad Sci U S A. 2021;118(46)doi: 10.1073/pnas.2113579118.
Hasegawa, Y., & Struhl, K. (2021). Different SP1 binding dynamics at individual genomic loci in human cells. Proceedings of the National Academy of Sciences of the United States of America, 118(46), . https://doi.org/10.1073/pnas.2113579118
Hasegawa, Yuko, and Struhl, Kevin. "Different SP1 binding dynamics at individual genomic loci in human cells." Proceedings of the National Academy of Sciences of the United States of America vol. 118,46 (2021). doi: https://doi.org/10.1073/pnas.2113579118
Hasegawa Y, Struhl K. Different SP1 binding dynamics at individual genomic loci in human cells. Proc Natl Acad Sci U S A. 2021 Nov 16;118(46). doi: 10.1073/pnas.2113579118. PMID: 34764224; PMCID: PMC8609546.
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Proximity labeling identifies a repertoire of site-specific R-loop modulators.

Nature communications

Yan Q, Wulfridge P, Doherty J, Fernandez-Luna JL, Real PJ, Tang HY, Sarma K.
PMID: 35013239
Nat Commun. 2022 Jan 10;13(1):53. doi: 10.1038/s41467-021-27722-6.

R-loops are three-stranded nucleic acid structures that accumulate on chromatin in neurological diseases and cancers and contribute to genome instability. Using a proximity-dependent labeling system, we identified distinct classes of proteins that regulate R-loops in vivo through different mechanisms....

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Yan Q, Wulfridge P, Doherty J, et al. Proximity labeling identifies a repertoire of site-specific R-loop modulators. Nat Commun. 2022;13(1):53doi: 10.1038/s41467-021-27722-6.
Yan, Q., Wulfridge, P., Doherty, J., Fernandez-Luna, J. L., Real, P. J., Tang, H. Y., & Sarma, K. (2022). Proximity labeling identifies a repertoire of site-specific R-loop modulators. Nature communications, 13(1), 53. https://doi.org/10.1038/s41467-021-27722-6
Yan, Qingqing, et al. "Proximity labeling identifies a repertoire of site-specific R-loop modulators." Nature communications vol. 13,1 (2022): 53. doi: https://doi.org/10.1038/s41467-021-27722-6
Yan Q, Wulfridge P, Doherty J, Fernandez-Luna JL, Real PJ, Tang HY, Sarma K. Proximity labeling identifies a repertoire of site-specific R-loop modulators. Nat Commun. 2022 Jan 10;13(1):53. doi: 10.1038/s41467-021-27722-6. PMID: 35013239.
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Identification of BELL Transcription Factors Involved in Nodule Initiation and Development in the Legumes .

Plants (Basel, Switzerland)

Dolgikh AV, Rudaya ES, Dolgikh EA.
PMID: 33419376
Plants (Basel). 2020 Dec 20;9(12). doi: 10.3390/plants9121808.

Single three-amino acid loop extension (TALE) homeodomain proteins, including the KNOTTED-like (KNOX) and BEL-like (BELL) families in plants, usually work as heterodimeric transcription factor complexes to regulate different developmental processes, often via effects on phytohormonal pathways. Nitrogen-fixing nodule formation...

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Dolgikh AV, Rudaya ES, Dolgikh EA. Identification of BELL Transcription Factors Involved in Nodule Initiation and Development in the Legumes . Plants (Basel). 2020;9(12)doi: 10.3390/plants9121808.
Dolgikh, A. V., Rudaya, E. S., & Dolgikh, E. A. (2020). Identification of BELL Transcription Factors Involved in Nodule Initiation and Development in the Legumes . Plants (Basel, Switzerland), 9(12), . https://doi.org/10.3390/plants9121808
Dolgikh, Alexandra V, et al. "Identification of BELL Transcription Factors Involved in Nodule Initiation and Development in the Legumes ." Plants (Basel, Switzerland) vol. 9,12 (2020). doi: https://doi.org/10.3390/plants9121808
Dolgikh AV, Rudaya ES, Dolgikh EA. Identification of BELL Transcription Factors Involved in Nodule Initiation and Development in the Legumes . Plants (Basel). 2020 Dec 20;9(12). doi: 10.3390/plants9121808. PMID: 33419376; PMCID: PMC7766112.
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Proximity labeling identifies a repertoire of site-specific R-loop modulators.

Nature communications

Yan Q, Wulfridge P, Doherty J, Fernandez-Luna JL, Real PJ, Tang HY, Sarma K.
PMID: 35013239
Nat Commun. 2022 Jan 10;13(1):53. doi: 10.1038/s41467-021-27722-6.

R-loops are three-stranded nucleic acid structures that accumulate on chromatin in neurological diseases and cancers and contribute to genome instability. Using a proximity-dependent labeling system, we identified distinct classes of proteins that regulate R-loops in vivo through different mechanisms....

Cite
Yan Q, Wulfridge P, Doherty J, et al. Proximity labeling identifies a repertoire of site-specific R-loop modulators. Nat Commun. 2022;13(1):53doi: 10.1038/s41467-021-27722-6.
Yan, Q., Wulfridge, P., Doherty, J., Fernandez-Luna, J. L., Real, P. J., Tang, H. Y., & Sarma, K. (2022). Proximity labeling identifies a repertoire of site-specific R-loop modulators. Nature communications, 13(1), 53. https://doi.org/10.1038/s41467-021-27722-6
Yan, Qingqing, et al. "Proximity labeling identifies a repertoire of site-specific R-loop modulators." Nature communications vol. 13,1 (2022): 53. doi: https://doi.org/10.1038/s41467-021-27722-6
Yan Q, Wulfridge P, Doherty J, Fernandez-Luna JL, Real PJ, Tang HY, Sarma K. Proximity labeling identifies a repertoire of site-specific R-loop modulators. Nat Commun. 2022 Jan 10;13(1):53. doi: 10.1038/s41467-021-27722-6. PMID: 35013239.
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Regulation of Silk Genes by Hox and Homeodomain Proteins in the Terminal Differentiated Silk Gland of the Silkworm Bombyx mori.

Journal of developmental biology

Takiya S, Tsubota T, Kimoto M.
PMID: 29615585
J Dev Biol. 2016 May 25;4(2). doi: 10.3390/jdb4020019.

The silk gland of the silkworm

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Takiya S, Tsubota T, Kimoto M. Regulation of Silk Genes by Hox and Homeodomain Proteins in the Terminal Differentiated Silk Gland of the Silkworm Bombyx mori. J Dev Biol. 2016;4(2)doi: 10.3390/jdb4020019.
Takiya, S., Tsubota, T., & Kimoto, M. (2016). Regulation of Silk Genes by Hox and Homeodomain Proteins in the Terminal Differentiated Silk Gland of the Silkworm Bombyx mori. Journal of developmental biology, 4(2), . https://doi.org/10.3390/jdb4020019
Takiya, Shigeharu, et al. "Regulation of Silk Genes by Hox and Homeodomain Proteins in the Terminal Differentiated Silk Gland of the Silkworm Bombyx mori." Journal of developmental biology vol. 4,2 (2016). doi: https://doi.org/10.3390/jdb4020019
Takiya S, Tsubota T, Kimoto M. Regulation of Silk Genes by Hox and Homeodomain Proteins in the Terminal Differentiated Silk Gland of the Silkworm Bombyx mori. J Dev Biol. 2016 May 25;4(2). doi: 10.3390/jdb4020019. PMID: 29615585; PMCID: PMC5831788.
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Gene regulation: able assistants for homeodomain proteins.

Current biology : CB

Manak JR, Scott MP.
PMID: 15335761
Curr Biol. 1993 May 01;3(5):318-20. doi: 10.1016/0960-9822(93)90191-p.

No abstract available.

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Manak JR, Scott MP. Gene regulation: able assistants for homeodomain proteins. Curr Biol. 1993;3(5):318-20doi: 10.1016/0960-9822(93)90191-p.
Manak, J. R., & Scott, M. P. (1993). Gene regulation: able assistants for homeodomain proteins. Current biology : CB, 3(5), 318-20. https://doi.org/10.1016/0960-9822(93)90191-p
Manak, J R, and Scott, M P. "Gene regulation: able assistants for homeodomain proteins." Current biology : CB vol. 3,5 (1993): 318-20. doi: https://doi.org/10.1016/0960-9822(93)90191-p
Manak JR, Scott MP. Gene regulation: able assistants for homeodomain proteins. Curr Biol. 1993 May 01;3(5):318-20. doi: 10.1016/0960-9822(93)90191-p. PMID: 15335761.
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Showing 1 to 12 of 36 entries