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Molecular Prognostic and Predictive Markers in Colorectal Cancer: Current Status.

Current colorectal cancer reports

Lee JK, Chan AT.
PMID: 21572547
Curr Colorectal Cancer Rep. 2011 Jun 01;7(2):136-144. doi: 10.1007/s11888-011-0091-4.

In parallel with our growing understanding of the molecular pathways underlying colorectal neoplasia, significant advances have been made in the treatment of colorectal cancer (CRC). For the past few decades, 5-fluorouracil-based therapy has been the cornerstone of adjuvant therapy....

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Lee JK, Chan AT. Molecular Prognostic and Predictive Markers in Colorectal Cancer: Current Status. Curr Colorectal Cancer Rep. 2011;7(2):136-144doi: 10.1007/s11888-011-0091-4.
Lee, J. K., & Chan, A. T. (2011). Molecular Prognostic and Predictive Markers in Colorectal Cancer: Current Status. Current colorectal cancer reports, 7(2), 136-144. https://doi.org/10.1007/s11888-011-0091-4
Lee, Jeffrey K, and Chan, Andrew T. "Molecular Prognostic and Predictive Markers in Colorectal Cancer: Current Status." Current colorectal cancer reports vol. 7,2 (2011): 136-144. doi: https://doi.org/10.1007/s11888-011-0091-4
Lee JK, Chan AT. Molecular Prognostic and Predictive Markers in Colorectal Cancer: Current Status. Curr Colorectal Cancer Rep. 2011 Jun 01;7(2):136-144. doi: 10.1007/s11888-011-0091-4. PMID: 21572547; PMCID: PMC3093112.
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Exploratory Genome-Wide Interaction Analysis of Nonsteroidal Anti-inflammatory Drugs and Predicted Gene Expression on Colorectal Cancer Risk.

Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology

Wang X, Su YR, Petersen PS, Bien S, Schmit SL, Drew DA, Albanes D, Berndt SI, Brenner H, Campbell PT, Casey G, Chang-Claude J, Gallinger SJ, Gruber SB, Haile RW, Harrison TA, Hoffmeister M, Jacobs EJ, Jenkins MA, Joshi AD, Li L, Lin Y, Lindor NM, Marchand LL, Martin V, Milne R, Maclnnis R, Moreno V, Nan H, Newcomb PA, Potter JD, Rennert G, Rennert H, Slattery ML, Thibodeau SN, Weinstein SJ, Woods MO, Chan AT, White E, Hsu L, Peters U.
PMID: 32651213
Cancer Epidemiol Biomarkers Prev. 2020 Sep;29(9):1800-1808. doi: 10.1158/1055-9965.EPI-19-1018. Epub 2020 Jul 10.

BACKGROUND: Regular use of nonsteroidal anti-inflammatory drugs (NSAID) is associated with lower risk of colorectal cancer. Genome-wide interaction analysis on single variants (G × E) has identified several SNPs that may interact with NSAIDs to confer colorectal cancer risk,...

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Wang X, Su YR, Petersen PS, et al. Exploratory Genome-Wide Interaction Analysis of Nonsteroidal Anti-inflammatory Drugs and Predicted Gene Expression on Colorectal Cancer Risk. Cancer Epidemiol Biomarkers Prev. 2020;29(9):1800-1808doi: 10.1158/1055-9965.EPI-19-1018.
Wang, X., Su, Y. R., Petersen, P. S., Bien, S., Schmit, S. L., Drew, D. A., Albanes, D., Berndt, S. I., Brenner, H., Campbell, P. T., Casey, G., Chang-Claude, J., Gallinger, S. J., Gruber, S. B., Haile, R. W., Harrison, T. A., Hoffmeister, M., Jacobs, E. J., Jenkins, M. A., Joshi, A. D., Li, L., Lin, Y., Lindor, N. M., Marchand, L. L., Martin, V., Milne, R., Maclnnis, R., Moreno, V., Nan, H., Newcomb, P. A., Potter, J. D., Rennert, G., Rennert, H., Slattery, M. L., Thibodeau, S. N., Weinstein, S. J., Woods, M. O., Chan, A. T., White, E., Hsu, L., & Peters, U. (2020). Exploratory Genome-Wide Interaction Analysis of Nonsteroidal Anti-inflammatory Drugs and Predicted Gene Expression on Colorectal Cancer Risk. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology, 29(9), 1800-1808. https://doi.org/10.1158/1055-9965.EPI-19-1018
Wang, Xiaoliang, et al. "Exploratory Genome-Wide Interaction Analysis of Nonsteroidal Anti-inflammatory Drugs and Predicted Gene Expression on Colorectal Cancer Risk." Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology vol. 29,9 (2020): 1800-1808. doi: https://doi.org/10.1158/1055-9965.EPI-19-1018
Wang X, Su YR, Petersen PS, Bien S, Schmit SL, Drew DA, Albanes D, Berndt SI, Brenner H, Campbell PT, Casey G, Chang-Claude J, Gallinger SJ, Gruber SB, Haile RW, Harrison TA, Hoffmeister M, Jacobs EJ, Jenkins MA, Joshi AD, Li L, Lin Y, Lindor NM, Marchand LL, Martin V, Milne R, Maclnnis R, Moreno V, Nan H, Newcomb PA, Potter JD, Rennert G, Rennert H, Slattery ML, Thibodeau SN, Weinstein SJ, Woods MO, Chan AT, White E, Hsu L, Peters U. Exploratory Genome-Wide Interaction Analysis of Nonsteroidal Anti-inflammatory Drugs and Predicted Gene Expression on Colorectal Cancer Risk. Cancer Epidemiol Biomarkers Prev. 2020 Sep;29(9):1800-1808. doi: 10.1158/1055-9965.EPI-19-1018. Epub 2020 Jul 10. PMID: 32651213; PMCID: PMC7556991.
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Association of .

Clinical cancer research : an official journal of the American Association for Cancer Research

Borowsky J, Haruki K, Lau MC, Dias Costa A, Väyrynen JP, Ugai T, Arima K, da Silva A, Felt KD, Zhao M, Gurjao C, Twombly TS, Fujiyoshi K, Väyrynen SA, Hamada T, Mima K, Bullman S, Harrison TA, Phipps AI, Peters U, Ng K, Meyerhardt JA, Song M, Giovannucci EL, Wu K, Zhang X, Freeman GJ, Huttenhower C, Garrett WS, Chan AT, Leggett BA, Whitehall VLJ, Walker N, Brown I, Bettington M, Nishihara R, Fuchs CS, Lennerz JK, Giannakis M, Nowak JA, Ogino S.
PMID: 33632927
Clin Cancer Res. 2021 May 15;27(10):2816-2826. doi: 10.1158/1078-0432.CCR-20-4009. Epub 2021 Feb 25.

PURPOSE: While evidence indicates that EXPERIMENTAL DESIGN: We measured RESULTS: The amount of CONCLUSIONS: The amount of tissue

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Borowsky J, Haruki K, Lau MC, et al. Association of . Clin Cancer Res. 2021;27(10):2816-2826doi: 10.1158/1078-0432.CCR-20-4009.
Borowsky, J., Haruki, K., Lau, M. C., Dias Costa, A., Väyrynen, J. P., Ugai, T., Arima, K., da Silva, A., Felt, K. D., Zhao, M., Gurjao, C., Twombly, T. S., Fujiyoshi, K., Väyrynen, S. A., Hamada, T., Mima, K., Bullman, S., Harrison, T. A., Phipps, A. I., Peters, U., Ng, K., Meyerhardt, J. A., Song, M., Giovannucci, E. L., Wu, K., Zhang, X., Freeman, G. J., Huttenhower, C., Garrett, W. S., Chan, A. T., Leggett, B. A., Whitehall, V. L. J., Walker, N., Brown, I., Bettington, M., Nishihara, R., Fuchs, C. S., Lennerz, J. K., Giannakis, M., Nowak, J. A., & Ogino, S. (2021). Association of . Clinical cancer research : an official journal of the American Association for Cancer Research, 27(10), 2816-2826. https://doi.org/10.1158/1078-0432.CCR-20-4009
Borowsky, Jennifer, et al. "Association of ." Clinical cancer research : an official journal of the American Association for Cancer Research vol. 27,10 (2021): 2816-2826. doi: https://doi.org/10.1158/1078-0432.CCR-20-4009
Borowsky J, Haruki K, Lau MC, Dias Costa A, Väyrynen JP, Ugai T, Arima K, da Silva A, Felt KD, Zhao M, Gurjao C, Twombly TS, Fujiyoshi K, Väyrynen SA, Hamada T, Mima K, Bullman S, Harrison TA, Phipps AI, Peters U, Ng K, Meyerhardt JA, Song M, Giovannucci EL, Wu K, Zhang X, Freeman GJ, Huttenhower C, Garrett WS, Chan AT, Leggett BA, Whitehall VLJ, Walker N, Brown I, Bettington M, Nishihara R, Fuchs CS, Lennerz JK, Giannakis M, Nowak JA, Ogino S. Association of . Clin Cancer Res. 2021 May 15;27(10):2816-2826. doi: 10.1158/1078-0432.CCR-20-4009. Epub 2021 Feb 25. PMID: 33632927; PMCID: PMC8127352.
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Preexisting Type 2 Diabetes and Survival among Patients with Colorectal Cancer.

Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology

Yuan C, Zhang X, Babic A, Morales-Oyarvide V, Zhang Y, Smith-Warner SA, Wu K, Wang M, Wolpin BM, Meyerhardt JA, Chan AT, Hu FB, Fuchs CS, Ogino S, Giovannucci EL, Ng K.
PMID: 33531435
Cancer Epidemiol Biomarkers Prev. 2021 Apr;30(4):757-764. doi: 10.1158/1055-9965.EPI-20-1083. Epub 2021 Feb 02.

BACKGROUND: Type 2 diabetes increases risk of developing colorectal cancer, but the association of preexisting diabetes with colorectal cancer survival remains unclear.METHODS: We analyzed survival by diabetes status at cancer diagnosis among 4,038 patients with colorectal cancer from two...

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Yuan C, Zhang X, Babic A, et al. Preexisting Type 2 Diabetes and Survival among Patients with Colorectal Cancer. Cancer Epidemiol Biomarkers Prev. 2021;30(4):757-764doi: 10.1158/1055-9965.EPI-20-1083.
Yuan, C., Zhang, X., Babic, A., Morales-Oyarvide, V., Zhang, Y., Smith-Warner, S. A., Wu, K., Wang, M., Wolpin, B. M., Meyerhardt, J. A., Chan, A. T., Hu, F. B., Fuchs, C. S., Ogino, S., Giovannucci, E. L., & Ng, K. (2021). Preexisting Type 2 Diabetes and Survival among Patients with Colorectal Cancer. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology, 30(4), 757-764. https://doi.org/10.1158/1055-9965.EPI-20-1083
Yuan, Chen, et al. "Preexisting Type 2 Diabetes and Survival among Patients with Colorectal Cancer." Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology vol. 30,4 (2021): 757-764. doi: https://doi.org/10.1158/1055-9965.EPI-20-1083
Yuan C, Zhang X, Babic A, Morales-Oyarvide V, Zhang Y, Smith-Warner SA, Wu K, Wang M, Wolpin BM, Meyerhardt JA, Chan AT, Hu FB, Fuchs CS, Ogino S, Giovannucci EL, Ng K. Preexisting Type 2 Diabetes and Survival among Patients with Colorectal Cancer. Cancer Epidemiol Biomarkers Prev. 2021 Apr;30(4):757-764. doi: 10.1158/1055-9965.EPI-20-1083. Epub 2021 Feb 02. PMID: 33531435; PMCID: PMC8026573.
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Unrestrained eating behavior and risk of mortality: A prospective cohort study.

Clinical nutrition (Edinburgh, Scotland)

Zhang Y, Song M, Yuan C, Chan AT, Schernhammer ES, Wolpin BM, Stampfer MJ, Meyerhardt JA, Fuchs CS, Roberts SB, Rimm EB, Willett WC, Hu FB, Giovannucci EL, Ng K.
PMID: 34653818
Clin Nutr. 2021 Nov;40(11):5419-5429. doi: 10.1016/j.clnu.2021.09.014. Epub 2021 Sep 17.

BACKGROUND & AIMS: Unrestrained eating behavior has been thought to be a proxy for diet frequency, timing, and caloric intake. We investigated the association of unrestrained eating with mortality risk in the Nurses' Health Study prospectively.METHODS: During follow-up (1994-2016),...

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Zhang Y, Song M, Yuan C, et al. Unrestrained eating behavior and risk of mortality: A prospective cohort study. Clin Nutr. 2021;40(11):5419-5429doi: 10.1016/j.clnu.2021.09.014.
Zhang, Y., Song, M., Yuan, C., Chan, A. T., Schernhammer, E. S., Wolpin, B. M., Stampfer, M. J., Meyerhardt, J. A., Fuchs, C. S., Roberts, S. B., Rimm, E. B., Willett, W. C., Hu, F. B., Giovannucci, E. L., & Ng, K. (2021). Unrestrained eating behavior and risk of mortality: A prospective cohort study. Clinical nutrition (Edinburgh, Scotland), 40(11), 5419-5429. https://doi.org/10.1016/j.clnu.2021.09.014
Zhang, Yin, et al. "Unrestrained eating behavior and risk of mortality: A prospective cohort study." Clinical nutrition (Edinburgh, Scotland) vol. 40,11 (2021): 5419-5429. doi: https://doi.org/10.1016/j.clnu.2021.09.014
Zhang Y, Song M, Yuan C, Chan AT, Schernhammer ES, Wolpin BM, Stampfer MJ, Meyerhardt JA, Fuchs CS, Roberts SB, Rimm EB, Willett WC, Hu FB, Giovannucci EL, Ng K. Unrestrained eating behavior and risk of mortality: A prospective cohort study. Clin Nutr. 2021 Nov;40(11):5419-5429. doi: 10.1016/j.clnu.2021.09.014. Epub 2021 Sep 17. PMID: 34653818; PMCID: PMC8571025.
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Fusobacterium nucleatum in Colorectal Carcinoma Tissue According to Tumor Location.

Clinical and translational gastroenterology

Mima K, Cao Y, Chan AT, Qian ZR, Nowak JA, Masugi Y, Shi Y, Song M, da Silva A, Gu M, Li W, Hamada T, Kosumi K, Hanyuda A, Liu L, Kostic AD, Giannakis M, Bullman S, Brennan CA, Milner DA, Baba H, Garraway LA, Meyerhardt JA, Garrett WS, Huttenhower C, Meyerson M, Giovannucci EL, Fuchs CS, Nishihara R, Ogino S.
PMID: 27811909
Clin Transl Gastroenterol. 2016 Nov 03;7(11):e200. doi: 10.1038/ctg.2016.53.

OBJECTIVES: Evidence suggests a possible role of Fusobacterium nucleatum in colorectal carcinogenesis, especially in right-sided proximal colorectum. Considering a change in bowel contents and microbiome from proximal to distal colorectal segments, we hypothesized that the proportion of colorectal carcinoma...

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Mima K, Cao Y, Chan AT, et al. Fusobacterium nucleatum in Colorectal Carcinoma Tissue According to Tumor Location. Clin Transl Gastroenterol. 2016;7(11):e200doi: 10.1038/ctg.2016.53.
Mima, K., Cao, Y., Chan, A. T., Qian, Z. R., Nowak, J. A., Masugi, Y., Shi, Y., Song, M., da Silva, A., Gu, M., Li, W., Hamada, T., Kosumi, K., Hanyuda, A., Liu, L., Kostic, A. D., Giannakis, M., Bullman, S., Brennan, C. A., Milner, D. A., Baba, H., Garraway, L. A., Meyerhardt, J. A., Garrett, W. S., Huttenhower, C., Meyerson, M., Giovannucci, E. L., Fuchs, C. S., Nishihara, R., & Ogino, S. (2016). Fusobacterium nucleatum in Colorectal Carcinoma Tissue According to Tumor Location. Clinical and translational gastroenterology, 7(11), e200. https://doi.org/10.1038/ctg.2016.53
Mima, Kosuke, et al. "Fusobacterium nucleatum in Colorectal Carcinoma Tissue According to Tumor Location." Clinical and translational gastroenterology vol. 7,11 (2016): e200. doi: https://doi.org/10.1038/ctg.2016.53
Mima K, Cao Y, Chan AT, Qian ZR, Nowak JA, Masugi Y, Shi Y, Song M, da Silva A, Gu M, Li W, Hamada T, Kosumi K, Hanyuda A, Liu L, Kostic AD, Giannakis M, Bullman S, Brennan CA, Milner DA, Baba H, Garraway LA, Meyerhardt JA, Garrett WS, Huttenhower C, Meyerson M, Giovannucci EL, Fuchs CS, Nishihara R, Ogino S. Fusobacterium nucleatum in Colorectal Carcinoma Tissue According to Tumor Location. Clin Transl Gastroenterol. 2016 Nov 03;7(11):e200. doi: 10.1038/ctg.2016.53. PMID: 27811909; PMCID: PMC5543402.
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Integration of pharmacology, molecular pathology, and population data science to support precision gastrointestinal oncology.

NPJ precision oncology

Ogino S, Jhun I, Mata DA, Soong TR, Hamada T, Liu L, Nishihara R, Giannakis M, Cao Y, Manson JE, Nowak JA, Chan AT.
PMID: 29552640
NPJ Precis Oncol. 2017;1. doi: 10.1038/s41698-017-0042-x. Epub 2017 Dec 06.

Precision medicine has a goal of customizing disease prevention and treatment strategies. Under the precision medicine paradigm, each patient has unique pathologic processes resulting from cellular genomic, epigenomic, proteomic, and metabolomic alterations, which are influenced by pharmacological, environmental, microbial,...

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Ogino S, Jhun I, Mata DA, et al. Integration of pharmacology, molecular pathology, and population data science to support precision gastrointestinal oncology. NPJ Precis Oncol. 2017;1doi: 10.1038/s41698-017-0042-x.
Ogino, S., Jhun, I., Mata, D. A., Soong, T. R., Hamada, T., Liu, L., Nishihara, R., Giannakis, M., Cao, Y., Manson, J. E., Nowak, J. A., & Chan, A. T. (2017). Integration of pharmacology, molecular pathology, and population data science to support precision gastrointestinal oncology. NPJ precision oncology, 1. https://doi.org/10.1038/s41698-017-0042-x
Ogino, Shuji, et al. "Integration of pharmacology, molecular pathology, and population data science to support precision gastrointestinal oncology." NPJ precision oncology vol. 1 (2017). doi: https://doi.org/10.1038/s41698-017-0042-x
Ogino S, Jhun I, Mata DA, Soong TR, Hamada T, Liu L, Nishihara R, Giannakis M, Cao Y, Manson JE, Nowak JA, Chan AT. Integration of pharmacology, molecular pathology, and population data science to support precision gastrointestinal oncology. NPJ Precis Oncol. 2017;1. doi: 10.1038/s41698-017-0042-x. Epub 2017 Dec 06. PMID: 29552640; PMCID: PMC5856171.
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Low-Carbohydrate Diet Score and Macronutrient Intake in Relation to Survival After Colorectal Cancer Diagnosis.

JNCI cancer spectrum

Song M, Wu K, Meyerhardt JA, Yilmaz O, Wang M, Ogino S, Fuchs CS, Giovannucci EL, Chan AT.
PMID: 30734025
JNCI Cancer Spectr. 2018 Nov;2(4):pky077. doi: 10.1093/jncics/pky077. Epub 2019 Jan 28.

BACKGROUND: A low-carbohydrate diet may improve cancer survival, but relevant clinical evidence remains limited.METHODS: We followed 1542 stages I to III colorectal cancer (CRC) patients who completed a validated food frequency questionnaire between 6 months and 4 years after...

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Song M, Wu K, Meyerhardt JA, et al. Low-Carbohydrate Diet Score and Macronutrient Intake in Relation to Survival After Colorectal Cancer Diagnosis. JNCI Cancer Spectr. 2019;2(4):pky077doi: 10.1093/jncics/pky077.
Song, M., Wu, K., Meyerhardt, J. A., Yilmaz, O., Wang, M., Ogino, S., Fuchs, C. S., Giovannucci, E. L., & Chan, A. T. (2018). Low-Carbohydrate Diet Score and Macronutrient Intake in Relation to Survival After Colorectal Cancer Diagnosis. JNCI cancer spectrum, 2(4), pky077. https://doi.org/10.1093/jncics/pky077
Song, Mingyang, et al. "Low-Carbohydrate Diet Score and Macronutrient Intake in Relation to Survival After Colorectal Cancer Diagnosis." JNCI cancer spectrum vol. 2,4 (2018): pky077. doi: https://doi.org/10.1093/jncics/pky077
Song M, Wu K, Meyerhardt JA, Yilmaz O, Wang M, Ogino S, Fuchs CS, Giovannucci EL, Chan AT. Low-Carbohydrate Diet Score and Macronutrient Intake in Relation to Survival After Colorectal Cancer Diagnosis. JNCI Cancer Spectr. 2018 Nov;2(4):pky077. doi: 10.1093/jncics/pky077. Epub 2019 Jan 28. PMID: 30734025; PMCID: PMC6350503.
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Molecular pathological epidemiology of epigenetics: emerging integrative science to analyze environment, host, and disease.

Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc

Ogino S, Lochhead P, Chan AT, Nishihara R, Cho E, Wolpin BM, Meyerhardt JA, Meissner A, Schernhammer ES, Fuchs CS, Giovannucci E.
PMID: 23307060
Mod Pathol. 2013 Apr;26(4):465-84. doi: 10.1038/modpathol.2012.214. Epub 2013 Jan 11.

Epigenetics acts as an interface between environmental/exogenous factors, cellular responses, and pathological processes. Aberrant epigenetic signatures are a hallmark of complex multifactorial diseases (including neoplasms and malignancies such as leukemias, lymphomas, sarcomas, and breast, lung, prostate, liver, and colorectal...

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Ogino S, Lochhead P, Chan AT, et al. Molecular pathological epidemiology of epigenetics: emerging integrative science to analyze environment, host, and disease. Mod Pathol. 2013;26(4):465-84doi: 10.1038/modpathol.2012.214.
Ogino, S., Lochhead, P., Chan, A. T., Nishihara, R., Cho, E., Wolpin, B. M., Meyerhardt, J. A., Meissner, A., Schernhammer, E. S., Fuchs, C. S., & Giovannucci, E. (2013). Molecular pathological epidemiology of epigenetics: emerging integrative science to analyze environment, host, and disease. Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc, 26(4), 465-84. https://doi.org/10.1038/modpathol.2012.214
Ogino, Shuji, et al. "Molecular pathological epidemiology of epigenetics: emerging integrative science to analyze environment, host, and disease." Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc vol. 26,4 (2013): 465-84. doi: https://doi.org/10.1038/modpathol.2012.214
Ogino S, Lochhead P, Chan AT, Nishihara R, Cho E, Wolpin BM, Meyerhardt JA, Meissner A, Schernhammer ES, Fuchs CS, Giovannucci E. Molecular pathological epidemiology of epigenetics: emerging integrative science to analyze environment, host, and disease. Mod Pathol. 2013 Apr;26(4):465-84. doi: 10.1038/modpathol.2012.214. Epub 2013 Jan 11. PMID: 23307060; PMCID: PMC3637979.
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Genomic Correlates of Immune-Cell Infiltrates in Colorectal Carcinoma.

Cell reports

Giannakis M, Mu XJ, Shukla SA, Qian ZR, Cohen O, Nishihara R, Bahl S, Cao Y, Amin-Mansour A, Yamauchi M, Sukawa Y, Stewart C, Rosenberg M, Mima K, Inamura K, Nosho K, Nowak JA, Lawrence MS, Giovannucci EL, Chan AT, Ng K, Meyerhardt JA, Van Allen EM, Getz G, Gabriel SB, Lander ES, Wu CJ, Fuchs CS, Ogino S, Garraway LA.
PMID: 27149842
Cell Rep. 2016 Apr 26;15(4):857-865. doi: 10.1016/j.celrep.2016.03.075. Epub 2016 Apr 14.

Large-scale genomic characterization of tumors from prospective cohort studies may yield new insights into cancer pathogenesis. We performed whole-exome sequencing of 619 incident colorectal cancers (CRCs) and integrated the results with tumor immunity, pathology, and survival data. We identified...

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Giannakis M, Mu XJ, Shukla SA, et al. Genomic Correlates of Immune-Cell Infiltrates in Colorectal Carcinoma. Cell Rep. 2016;15(4):857-865doi: 10.1016/j.celrep.2016.03.075.
Giannakis, M., Mu, X. J., Shukla, S. A., Qian, Z. R., Cohen, O., Nishihara, R., Bahl, S., Cao, Y., Amin-Mansour, A., Yamauchi, M., Sukawa, Y., Stewart, C., Rosenberg, M., Mima, K., Inamura, K., Nosho, K., Nowak, J. A., Lawrence, M. S., Giovannucci, E. L., Chan, A. T., Ng, K., Meyerhardt, J. A., Van Allen, E. M., Getz, G., Gabriel, S. B., Lander, E. S., Wu, C. J., Fuchs, C. S., Ogino, S., & Garraway, L. A. (2016). Genomic Correlates of Immune-Cell Infiltrates in Colorectal Carcinoma. Cell reports, 15(4), 857-865. https://doi.org/10.1016/j.celrep.2016.03.075
Giannakis, Marios, et al. "Genomic Correlates of Immune-Cell Infiltrates in Colorectal Carcinoma." Cell reports vol. 15,4 (2016): 857-865. doi: https://doi.org/10.1016/j.celrep.2016.03.075
Giannakis M, Mu XJ, Shukla SA, Qian ZR, Cohen O, Nishihara R, Bahl S, Cao Y, Amin-Mansour A, Yamauchi M, Sukawa Y, Stewart C, Rosenberg M, Mima K, Inamura K, Nosho K, Nowak JA, Lawrence MS, Giovannucci EL, Chan AT, Ng K, Meyerhardt JA, Van Allen EM, Getz G, Gabriel SB, Lander ES, Wu CJ, Fuchs CS, Ogino S, Garraway LA. Genomic Correlates of Immune-Cell Infiltrates in Colorectal Carcinoma. Cell Rep. 2016 Apr 26;15(4):857-865. doi: 10.1016/j.celrep.2016.03.075. Epub 2016 Apr 14. PMID: 27149842; PMCID: PMC4850357.
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Prognostic significance of myeloid immune cells and their spatial distribution in the colorectal cancer microenvironment.

Journal for immunotherapy of cancer

Väyrynen JP, Haruki K, Väyrynen SA, Lau MC, Dias Costa A, Borowsky J, Zhao M, Ugai T, Kishikawa J, Akimoto N, Zhong R, Shi S, Chang TW, Fujiyoshi K, Arima K, Twombly TS, Da Silva A, Song M, Wu K, Zhang X, Chan AT, Nishihara R, Fuchs CS, Meyerhardt JA, Giannakis M, Ogino S, Nowak JA.
PMID: 33931472
J Immunother Cancer. 2021 Apr;9(4). doi: 10.1136/jitc-2020-002297.

BACKGROUND: Myeloid cells represent an abundant yet heterogeneous cell population in the colorectal cancer microenvironment, and their roles remain poorly understood.METHODS: We used multiplexed immunofluorescence combined with digital image analysis to identify CD14RESULTS: Higher intraepithelial (CONCLUSIONS: Myeloid cell populations...

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Väyrynen JP, Haruki K, Väyrynen SA, et al. Prognostic significance of myeloid immune cells and their spatial distribution in the colorectal cancer microenvironment. J Immunother Cancer. 2021;9(4)doi: 10.1136/jitc-2020-002297.
Väyrynen, J. P., Haruki, K., Väyrynen, S. A., Lau, M. C., Dias Costa, A., Borowsky, J., Zhao, M., Ugai, T., Kishikawa, J., Akimoto, N., Zhong, R., Shi, S., Chang, T. W., Fujiyoshi, K., Arima, K., Twombly, T. S., Da Silva, A., Song, M., Wu, K., Zhang, X., Chan, A. T., Nishihara, R., Fuchs, C. S., Meyerhardt, J. A., Giannakis, M., Ogino, S., & Nowak, J. A. (2021). Prognostic significance of myeloid immune cells and their spatial distribution in the colorectal cancer microenvironment. Journal for immunotherapy of cancer, 9(4), . https://doi.org/10.1136/jitc-2020-002297
Väyrynen, Juha P, et al. "Prognostic significance of myeloid immune cells and their spatial distribution in the colorectal cancer microenvironment." Journal for immunotherapy of cancer vol. 9,4 (2021). doi: https://doi.org/10.1136/jitc-2020-002297
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Changes in Lifestyle Factors After Endoscopic Screening: A Prospective Study in the United States.

Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association

Knudsen MD, Wang L, Wang K, Wu K, Ogino S, Chan AT, Giovannucci E, Song M.
PMID: 34256146
Clin Gastroenterol Hepatol. 2021 Jul 10; doi: 10.1016/j.cgh.2021.07.014. Epub 2021 Jul 10.

BACKGROUND: Endoscopic screening and adherence to a healthy lifestyle are major avenues for colorectal cancer (CRC) prevention. We investigated changes in lifestyles after endoscopic screening.METHODS: We drew data from 76,303 pairs of time- and age-matched individuals who had and...

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Knudsen MD, Wang L, Wang K, et al. Changes in Lifestyle Factors After Endoscopic Screening: A Prospective Study in the United States. Clin Gastroenterol Hepatol. 2021;doi: 10.1016/j.cgh.2021.07.014.
Knudsen, M. D., Wang, L., Wang, K., Wu, K., Ogino, S., Chan, A. T., Giovannucci, E., & Song, M. (2021). Changes in Lifestyle Factors After Endoscopic Screening: A Prospective Study in the United States. Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association, . https://doi.org/10.1016/j.cgh.2021.07.014
Knudsen, Markus Dines, et al. "Changes in Lifestyle Factors After Endoscopic Screening: A Prospective Study in the United States." Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association vol. (2021). doi: https://doi.org/10.1016/j.cgh.2021.07.014
Knudsen MD, Wang L, Wang K, Wu K, Ogino S, Chan AT, Giovannucci E, Song M. Changes in Lifestyle Factors After Endoscopic Screening: A Prospective Study in the United States. Clin Gastroenterol Hepatol. 2021 Jul 10; doi: 10.1016/j.cgh.2021.07.014. Epub 2021 Jul 10. PMID: 34256146; PMCID: PMC8743303.
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