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THE EVOLUTION OF DIAPAUSE IN THE KILLIFISH FAMILY RIVULIDAE (ATHERINOMORPHA, CYPRINODONTIFORMES): A MOLECULAR PHYLOGENETIC AND BIOGEOGRAPHIC PERSPECTIVE.

Evolution; international journal of organic evolution

Hrbek T, Larson A.
PMID: 28565541
Evolution. 1999 Aug;53(4):1200-1216. doi: 10.1111/j.1558-5646.1999.tb04533.x.

Phylogenetic relationships within the family Rivulidae (order Cyprinodontiformes) are investigated using 1972 aligned base pairs of mitochondrial DNA (mtDNA) for samples representing 66 species. Genes analyzed include those encoding the 12S ribosomal RNA; transfer RNAs for valine, glutamine, methionine,...

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Hrbek T, Larson A. THE EVOLUTION OF DIAPAUSE IN THE KILLIFISH FAMILY RIVULIDAE (ATHERINOMORPHA, CYPRINODONTIFORMES): A MOLECULAR PHYLOGENETIC AND BIOGEOGRAPHIC PERSPECTIVE. Evolution. 1999;53(4):1200-1216doi: 10.1111/j.1558-5646.1999.tb04533.x.
Hrbek, T., & Larson, A. (1999). THE EVOLUTION OF DIAPAUSE IN THE KILLIFISH FAMILY RIVULIDAE (ATHERINOMORPHA, CYPRINODONTIFORMES): A MOLECULAR PHYLOGENETIC AND BIOGEOGRAPHIC PERSPECTIVE. Evolution; international journal of organic evolution, 53(4), 1200-1216. https://doi.org/10.1111/j.1558-5646.1999.tb04533.x
Hrbek, Tomas, and Larson, Allan. "THE EVOLUTION OF DIAPAUSE IN THE KILLIFISH FAMILY RIVULIDAE (ATHERINOMORPHA, CYPRINODONTIFORMES): A MOLECULAR PHYLOGENETIC AND BIOGEOGRAPHIC PERSPECTIVE." Evolution; international journal of organic evolution vol. 53,4 (1999): 1200-1216. doi: https://doi.org/10.1111/j.1558-5646.1999.tb04533.x
Hrbek T, Larson A. THE EVOLUTION OF DIAPAUSE IN THE KILLIFISH FAMILY RIVULIDAE (ATHERINOMORPHA, CYPRINODONTIFORMES): A MOLECULAR PHYLOGENETIC AND BIOGEOGRAPHIC PERSPECTIVE. Evolution. 1999 Aug;53(4):1200-1216. doi: 10.1111/j.1558-5646.1999.tb04533.x. PMID: 28565541.
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Comparative Genomics of Trypanosomatid Pathogens using Codon Usage Bias.

Bioinformation

Rashmi M, Swati D.
PMID: 24307769
Bioinformation. 2013 Nov 11;9(18):912-8. doi: 10.6026/97320630009912. eCollection 2013.

UNLABELLED: It is well known that an amino acid can be encoded by more than one codon, called synonymous codons. The preferential use of one particular codon for coding an amino acid is referred to as codon usage bias...

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Rashmi M, Swati D. Comparative Genomics of Trypanosomatid Pathogens using Codon Usage Bias. Bioinformation. 2013;9(18):912-8doi: 10.6026/97320630009912.
Rashmi, M., & Swati, D. (2013). Comparative Genomics of Trypanosomatid Pathogens using Codon Usage Bias. Bioinformation, 9(18), 912-8. https://doi.org/10.6026/97320630009912
Rashmi, Mayank, and Swati, D. "Comparative Genomics of Trypanosomatid Pathogens using Codon Usage Bias." Bioinformation vol. 9,18 (2013): 912-8. doi: https://doi.org/10.6026/97320630009912
Rashmi M, Swati D. Comparative Genomics of Trypanosomatid Pathogens using Codon Usage Bias. Bioinformation. 2013 Nov 11;9(18):912-8. doi: 10.6026/97320630009912. eCollection 2013. PMID: 24307769; PMCID: PMC3842577.
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Extracellular RNA transfer from non-malignant human cholangiocytes can promote cholangiocarcinoma growth.

FEBS open bio

Ota Y, Takahashi K, Otake S, Tamaki Y, Okada M, Yan I, Aso K, Fujii S, Patel T, Haneda M.
PMID: 34510808
FEBS Open Bio. 2021 Dec;11(12):3276-3292. doi: 10.1002/2211-5463.13294. Epub 2021 Sep 22.

Extracellular vesicles (EV) within the cellular secretome are emerging as modulators of pathological processes involved in tumor growth through their ability to transfer donor-derived RNA into recipient cells. While the effects of tumor and stromal cell EVs within the...

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Ota Y, Takahashi K, Otake S, et al. Extracellular RNA transfer from non-malignant human cholangiocytes can promote cholangiocarcinoma growth. FEBS Open Bio. 2021;11(12):3276-3292doi: 10.1002/2211-5463.13294.
Ota, Y., Takahashi, K., Otake, S., Tamaki, Y., Okada, M., Yan, I., Aso, K., Fujii, S., Patel, T., & Haneda, M. (2021). Extracellular RNA transfer from non-malignant human cholangiocytes can promote cholangiocarcinoma growth. FEBS open bio, 11(12), 3276-3292. https://doi.org/10.1002/2211-5463.13294
Ota, Yu, et al. "Extracellular RNA transfer from non-malignant human cholangiocytes can promote cholangiocarcinoma growth." FEBS open bio vol. 11,12 (2021): 3276-3292. doi: https://doi.org/10.1002/2211-5463.13294
Ota Y, Takahashi K, Otake S, Tamaki Y, Okada M, Yan I, Aso K, Fujii S, Patel T, Haneda M. Extracellular RNA transfer from non-malignant human cholangiocytes can promote cholangiocarcinoma growth. FEBS Open Bio. 2021 Dec;11(12):3276-3292. doi: 10.1002/2211-5463.13294. Epub 2021 Sep 22. PMID: 34510808; PMCID: PMC8634862.
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Small RNA fingerprinting of Alzheimer's disease frontal cortex extracellular vesicles and their comparison with peripheral extracellular vesicles.

Journal of extracellular vesicles

Cheng L, Vella LJ, Barnham KJ, McLean C, Masters CL, Hill AF.
PMID: 32922692
J Extracell Vesicles. 2020 Jun 04;9(1):1766822. doi: 10.1080/20013078.2020.1766822.

Alzheimer's disease is a progressive neurodegenerative disorder, with the strongest disease-associated changes observed at clinical or end-stage disease. Transcriptomic deregulation of miRNA expression can spread via "horizontal" RNA transfer through extracellular vesicles (EVs) to act in conjunction with proteins,...

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Cheng L, Vella LJ, Barnham KJ, et al. Small RNA fingerprinting of Alzheimer's disease frontal cortex extracellular vesicles and their comparison with peripheral extracellular vesicles. J Extracell Vesicles. 2020;9(1):1766822doi: 10.1080/20013078.2020.1766822.
Cheng, L., Vella, L. J., Barnham, K. J., McLean, C., Masters, C. L., & Hill, A. F. (2020). Small RNA fingerprinting of Alzheimer's disease frontal cortex extracellular vesicles and their comparison with peripheral extracellular vesicles. Journal of extracellular vesicles, 9(1), 1766822. https://doi.org/10.1080/20013078.2020.1766822
Cheng, Lesley, et al. "Small RNA fingerprinting of Alzheimer's disease frontal cortex extracellular vesicles and their comparison with peripheral extracellular vesicles." Journal of extracellular vesicles vol. 9,1 (2020): 1766822. doi: https://doi.org/10.1080/20013078.2020.1766822
Cheng L, Vella LJ, Barnham KJ, McLean C, Masters CL, Hill AF. Small RNA fingerprinting of Alzheimer's disease frontal cortex extracellular vesicles and their comparison with peripheral extracellular vesicles. J Extracell Vesicles. 2020 Jun 04;9(1):1766822. doi: 10.1080/20013078.2020.1766822. PMID: 32922692; PMCID: PMC7448944.
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[Research Advance of the Roles of N6-methyladenosine in the Regulation of Hematopoiesis--Review].

Zhongguo shi yan xue ye xue za zhi

Wang NN, Li YP, Cheng T, Cheng H.
PMID: 34893144
Zhongguo Shi Yan Xue Ye Xue Za Zhi. 2021 Dec;29(6):1972-1976. doi: 10.19746/j.cnki.issn.1009-2137.2021.06.049.

There are more than 150 types of chemical modifications in RNA, mainly methylation, which are widely distributed in all kinds of RNA, including messenger RNA, transfer RNA, ribosomal RNA, non-coding small RNA and long non-coding RNA. In recent years,...

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Wang NN, Li YP, Cheng T, et al. [Research Advance of the Roles of N6-methyladenosine in the Regulation of Hematopoiesis--Review]. Zhongguo Shi Yan Xue Ye Xue Za Zhi. 2021;29(6):1972-1976doi: 10.19746/j.cnki.issn.1009-2137.2021.06.049.
Wang, N. N., Li, Y. P., Cheng, T., & Cheng, H. (2021). [Research Advance of the Roles of N6-methyladenosine in the Regulation of Hematopoiesis--Review]. Zhongguo shi yan xue ye xue za zhi, 29(6), 1972-1976. https://doi.org/10.19746/j.cnki.issn.1009-2137.2021.06.049
Wang, Ni-Ni, et al. "[Research Advance of the Roles of N6-methyladenosine in the Regulation of Hematopoiesis--Review]." Zhongguo shi yan xue ye xue za zhi vol. 29,6 (2021): 1972-1976. doi: https://doi.org/10.19746/j.cnki.issn.1009-2137.2021.06.049
Wang NN, Li YP, Cheng T, Cheng H. [Research Advance of the Roles of N6-methyladenosine in the Regulation of Hematopoiesis--Review]. Zhongguo Shi Yan Xue Ye Xue Za Zhi. 2021 Dec;29(6):1972-1976. doi: 10.19746/j.cnki.issn.1009-2137.2021.06.049. Chinese. PMID: 34893144.
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Regulation of the U3-, U8-, and U13snoRNA Expression by the DEAD Box Proteins Ddx5/Ddx17 with Consequences for Cell Proliferation and Survival.

Non-coding RNA

Ismael H, Altmeyer S, Stahl H.
PMID: 29657268
Noncoding RNA. 2016 Sep 30;2(4). doi: 10.3390/ncrna2040011.

Small nucleolar RNAs (snoRNAs) in cooperation with their associated proteins (snoRNPs) contribute to the maturation of ribosomal RNA, transfer RNA, and other transcripts. Most snoRNPs mediate chemical base modifications of their RNA substrates, and a few others, like those...

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Ismael H, Altmeyer S, Stahl H. Regulation of the U3-, U8-, and U13snoRNA Expression by the DEAD Box Proteins Ddx5/Ddx17 with Consequences for Cell Proliferation and Survival. Noncoding RNA. 2016;2(4)doi: 10.3390/ncrna2040011.
Ismael, H., Altmeyer, S., & Stahl, H. (2016). Regulation of the U3-, U8-, and U13snoRNA Expression by the DEAD Box Proteins Ddx5/Ddx17 with Consequences for Cell Proliferation and Survival. Non-coding RNA, 2(4), . https://doi.org/10.3390/ncrna2040011
Ismael, Hala, et al. "Regulation of the U3-, U8-, and U13snoRNA Expression by the DEAD Box Proteins Ddx5/Ddx17 with Consequences for Cell Proliferation and Survival." Non-coding RNA vol. 2,4 (2016). doi: https://doi.org/10.3390/ncrna2040011
Ismael H, Altmeyer S, Stahl H. Regulation of the U3-, U8-, and U13snoRNA Expression by the DEAD Box Proteins Ddx5/Ddx17 with Consequences for Cell Proliferation and Survival. Noncoding RNA. 2016 Sep 30;2(4). doi: 10.3390/ncrna2040011. PMID: 29657268; PMCID: PMC5831926.
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The effects of abscisic Acid on growth and nucleic Acid synthesis in excised embryonic bean axes.

Plant physiology

Walton DC, Soofi GS, Sondheimer E.
PMID: 16657275
Plant Physiol. 1970 Jan;45(1):37-40. doi: 10.1104/pp.45.1.37.

Abscisic acid (ABA) is an effective inhibitor of cell elongation in excised embryonic bean axes whether added prior to or after the initiation of cell elongation. Zeatin partially reverses this growth inhibition. ABA inhibits (32)P incorporation into ribosomal RNA,...

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Walton DC, Soofi GS, Sondheimer E. The effects of abscisic Acid on growth and nucleic Acid synthesis in excised embryonic bean axes. Plant Physiol. 1970;45(1):37-40doi: 10.1104/pp.45.1.37.
Walton, D. C., Soofi, G. S., & Sondheimer, E. (1970). The effects of abscisic Acid on growth and nucleic Acid synthesis in excised embryonic bean axes. Plant physiology, 45(1), 37-40. https://doi.org/10.1104/pp.45.1.37
Walton, D C, et al. "The effects of abscisic Acid on growth and nucleic Acid synthesis in excised embryonic bean axes." Plant physiology vol. 45,1 (1970): 37-40. doi: https://doi.org/10.1104/pp.45.1.37
Walton DC, Soofi GS, Sondheimer E. The effects of abscisic Acid on growth and nucleic Acid synthesis in excised embryonic bean axes. Plant Physiol. 1970 Jan;45(1):37-40. doi: 10.1104/pp.45.1.37. PMID: 16657275; PMCID: PMC396350.
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Exosomes: Fit to deliver small RNA.

Communicative & integrative biology

Zomer A, Vendrig T, Hopmans ES, van Eijndhoven M, Middeldorp JM, Pegtel DM.
PMID: 21057637
Commun Integr Biol. 2010 Sep;3(5):447-50. doi: 10.4161/cib.3.5.12339.

Exosomes are specialized membranous nano-sized vesicles derived from endocytic compartments that are released by many cell types. Microvesicles are distinctive from exosomes in that they are produced by shedding of the plasmamembrane and usually larger in size (>1 µm)....

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Zomer A, Vendrig T, Hopmans ES, et al. Exosomes: Fit to deliver small RNA. Commun Integr Biol. 2010;3(5):447-50doi: 10.4161/cib.3.5.12339.
Zomer, A., Vendrig, T., Hopmans, E. S., van Eijndhoven, M., Middeldorp, J. M., & Pegtel, D. M. (2010). Exosomes: Fit to deliver small RNA. Communicative & integrative biology, 3(5), 447-50. https://doi.org/10.4161/cib.3.5.12339
Zomer, Anoek, et al. "Exosomes: Fit to deliver small RNA." Communicative & integrative biology vol. 3,5 (2010): 447-50. doi: https://doi.org/10.4161/cib.3.5.12339
Zomer A, Vendrig T, Hopmans ES, van Eijndhoven M, Middeldorp JM, Pegtel DM. Exosomes: Fit to deliver small RNA. Commun Integr Biol. 2010 Sep;3(5):447-50. doi: 10.4161/cib.3.5.12339. PMID: 21057637; PMCID: PMC2974077.
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Protein-based vehicles for biomimetic RNAi delivery.

Journal of biological engineering

Pottash AE, Kuffner C, Noonan-Shueh M, Jay SM.
PMID: 30891095
J Biol Eng. 2019 Feb 26;13:19. doi: 10.1186/s13036-018-0130-7. eCollection 2019.

Broad translational success of RNA interference (RNAi) technology depends on the development of effective delivery approaches. To that end, researchers have developed a variety of strategies, including chemical modification of RNA, viral and non-viral transfection approaches, and incorporation with...

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Pottash AE, Kuffner C, Noonan-Shueh M, et al. Protein-based vehicles for biomimetic RNAi delivery. J Biol Eng. 2019;13:19doi: 10.1186/s13036-018-0130-7.
Pottash, A. E., Kuffner, C., Noonan-Shueh, M., & Jay, S. M. (2019). Protein-based vehicles for biomimetic RNAi delivery. Journal of biological engineering, 1319. https://doi.org/10.1186/s13036-018-0130-7
Pottash, Alex Eli, et al. "Protein-based vehicles for biomimetic RNAi delivery." Journal of biological engineering vol. 13 (2019): 19. doi: https://doi.org/10.1186/s13036-018-0130-7
Pottash AE, Kuffner C, Noonan-Shueh M, Jay SM. Protein-based vehicles for biomimetic RNAi delivery. J Biol Eng. 2019 Feb 26;13:19. doi: 10.1186/s13036-018-0130-7. eCollection 2019. PMID: 30891095; PMCID: PMC6390323.
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Uptake of platelets by cancer cells and recycling of the platelet protein CD42a.

Journal of thrombosis and haemostasis : JTH

Martins Castanheira N, Spanhofer AK, Wiener S, Bobe S, Schillers H.
PMID: 34592045
J Thromb Haemost. 2022 Jan;20(1):170-181. doi: 10.1111/jth.15543. Epub 2021 Oct 16.

BACKGROUND: It is well accepted that the bidirectional crosstalk between platelets and cancer cells promotes tumorigenesis and metastasis. In an early step, cancer cells trigger platelet granule and extracellular vesicle release that is needed to facilitate cancer cell survival...

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Martins Castanheira N, Spanhofer AK, Wiener S, et al. Uptake of platelets by cancer cells and recycling of the platelet protein CD42a. J Thromb Haemost. 2021;20(1):170-181doi: 10.1111/jth.15543.
Martins Castanheira, N., Spanhofer, A. K., Wiener, S., Bobe, S., & Schillers, H. (2022). Uptake of platelets by cancer cells and recycling of the platelet protein CD42a. Journal of thrombosis and haemostasis : JTH, 20(1), 170-181. https://doi.org/10.1111/jth.15543
Martins Castanheira, Nadine, et al. "Uptake of platelets by cancer cells and recycling of the platelet protein CD42a." Journal of thrombosis and haemostasis : JTH vol. 20,1 (2022): 170-181. doi: https://doi.org/10.1111/jth.15543
Martins Castanheira N, Spanhofer AK, Wiener S, Bobe S, Schillers H. Uptake of platelets by cancer cells and recycling of the platelet protein CD42a. J Thromb Haemost. 2022 Jan;20(1):170-181. doi: 10.1111/jth.15543. Epub 2021 Oct 16. PMID: 34592045.
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RNA Polymerase III Subunit Mutations in Genetic Diseases.

Frontiers in molecular biosciences

Lata E, Choquet K, Sagliocco F, Brais B, Bernard G, Teichmann M.
PMID: 34395528
Front Mol Biosci. 2021 Jul 30;8:696438. doi: 10.3389/fmolb.2021.696438. eCollection 2021.

RNA polymerase (Pol) III transcribes small untranslated RNAs such as 5S ribosomal RNA, transfer RNAs, and U6 small nuclear RNA. Because of the functions of these RNAs, Pol III transcription is best known for its essential contribution to RNA...

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Lata E, Choquet K, Sagliocco F, et al. RNA Polymerase III Subunit Mutations in Genetic Diseases. Front Mol Biosci. 2021;8:696438doi: 10.3389/fmolb.2021.696438.
Lata, E., Choquet, K., Sagliocco, F., Brais, B., Bernard, G., & Teichmann, M. (2021). RNA Polymerase III Subunit Mutations in Genetic Diseases. Frontiers in molecular biosciences, 8696438. https://doi.org/10.3389/fmolb.2021.696438
Lata, Elisabeth, et al. "RNA Polymerase III Subunit Mutations in Genetic Diseases." Frontiers in molecular biosciences vol. 8 (2021): 696438. doi: https://doi.org/10.3389/fmolb.2021.696438
Lata E, Choquet K, Sagliocco F, Brais B, Bernard G, Teichmann M. RNA Polymerase III Subunit Mutations in Genetic Diseases. Front Mol Biosci. 2021 Jul 30;8:696438. doi: 10.3389/fmolb.2021.696438. eCollection 2021. PMID: 34395528; PMCID: PMC8362101.
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Nucleotide sequence of F(0)-ATPase proteolipid (subunit 9) gene of maize mitochondria.

Proceedings of the National Academy of Sciences of the United States of America

Dewey RE, Schuster AM, Levings CS, Timothy DH.
PMID: 16593542
Proc Natl Acad Sci U S A. 1985 Feb;82(4):1015-9. doi: 10.1073/pnas.82.4.1015.

The F(0)-ATPase proteolipid, also referred to as subunit 9 or the dicyclohexylcarbodiimide-binding protein, is encoded by a mitochondrial gene in maize that we have designated atp 9. The clone containing atp 9 was selected for investigation from a mitochondrial...

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Dewey RE, Schuster AM, Levings CS, et al. Nucleotide sequence of F(0)-ATPase proteolipid (subunit 9) gene of maize mitochondria. Proc Natl Acad Sci U S A. 1985;82(4):1015-9doi: 10.1073/pnas.82.4.1015.
Dewey, R. E., Schuster, A. M., Levings, C. S., & Timothy, D. H. (1985). Nucleotide sequence of F(0)-ATPase proteolipid (subunit 9) gene of maize mitochondria. Proceedings of the National Academy of Sciences of the United States of America, 82(4), 1015-9. https://doi.org/10.1073/pnas.82.4.1015
Dewey, R E, et al. "Nucleotide sequence of F(0)-ATPase proteolipid (subunit 9) gene of maize mitochondria." Proceedings of the National Academy of Sciences of the United States of America vol. 82,4 (1985): 1015-9. doi: https://doi.org/10.1073/pnas.82.4.1015
Dewey RE, Schuster AM, Levings CS, Timothy DH. Nucleotide sequence of F(0)-ATPase proteolipid (subunit 9) gene of maize mitochondria. Proc Natl Acad Sci U S A. 1985 Feb;82(4):1015-9. doi: 10.1073/pnas.82.4.1015. PMID: 16593542; PMCID: PMC397184.
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Showing 1 to 12 of 28 entries