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SNPTransformer: a lightweight toolkit for genome-wide association studies.

Genomics, proteomics & bioinformatics

Dong C.
PMID: 21382596
Genomics Proteomics Bioinformatics. 2010 Dec;8(4):268-73. doi: 10.1016/S1672-0229(10)60029-0.

High-throughput genotyping chips have produced huge datasets for genome-wide association studies (GWAS) that have contributed greatly to discovering susceptibility genes for complex diseases. There are two strategies for performing data analysis for GWAS. One strategy is to use open-source...

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Dong C. SNPTransformer: a lightweight toolkit for genome-wide association studies. Genomics Proteomics Bioinformatics. 2010;8(4):268-73doi: 10.1016/S1672-0229(10)60029-0.
Dong, C. (2010). SNPTransformer: a lightweight toolkit for genome-wide association studies. Genomics, proteomics & bioinformatics, 8(4), 268-73. https://doi.org/10.1016/S1672-0229(10)60029-0
Dong, Changzheng. "SNPTransformer: a lightweight toolkit for genome-wide association studies." Genomics, proteomics & bioinformatics vol. 8,4 (2010): 268-73. doi: https://doi.org/10.1016/S1672-0229(10)60029-0
Dong C. SNPTransformer: a lightweight toolkit for genome-wide association studies. Genomics Proteomics Bioinformatics. 2010 Dec;8(4):268-73. doi: 10.1016/S1672-0229(10)60029-0. PMID: 21382596; PMCID: PMC5054149.
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Recent genomic advances in schizophrenia.

Clinical genetics

Doherty JL, O'Donovan MC, Owen MJ.
PMID: 21895634
Clin Genet. 2012 Feb;81(2):103-9. doi: 10.1111/j.1399-0004.2011.01773.x. Epub 2011 Oct 05.

Recent studies have supported the hypothesis based upon expectations from population genetics that the high heritability of schizophrenia reflects a combination of relatively common alleles of small effect and rare alleles some with relatively large effects. Genome-wide association studies...

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Doherty JL, O'Donovan MC, Owen MJ. Recent genomic advances in schizophrenia. Clin Genet. 2011;81(2):103-9doi: 10.1111/j.1399-0004.2011.01773.x.
Doherty, J. L., O'Donovan, M. C., & Owen, M. J. (2012). Recent genomic advances in schizophrenia. Clinical genetics, 81(2), 103-9. https://doi.org/10.1111/j.1399-0004.2011.01773.x
Doherty, J L, et al. "Recent genomic advances in schizophrenia." Clinical genetics vol. 81,2 (2012): 103-9. doi: https://doi.org/10.1111/j.1399-0004.2011.01773.x
Doherty JL, O'Donovan MC, Owen MJ. Recent genomic advances in schizophrenia. Clin Genet. 2012 Feb;81(2):103-9. doi: 10.1111/j.1399-0004.2011.01773.x. Epub 2011 Oct 05. PMID: 21895634.
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FAPI: Fast and accurate P-value Imputation for genome-wide association study.

European journal of human genetics : EJHG

Kwan JS, Li MX, Deng JE, Sham PC.
PMID: 26306642
Eur J Hum Genet. 2016 May;24(5):761-6. doi: 10.1038/ejhg.2015.190. Epub 2015 Aug 26.

Imputing individual-level genotypes (or genotype imputation) is now a standard procedure in genome-wide association studies (GWAS) to examine disease associations at untyped common genetic variants. Meta-analysis of publicly available GWAS summary statistics can allow more disease-associated loci to be...

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Kwan JS, Li MX, Deng JE, et al. FAPI: Fast and accurate P-value Imputation for genome-wide association study. Eur J Hum Genet. 2015;24(5):761-6doi: 10.1038/ejhg.2015.190.
Kwan, J. S., Li, M. X., Deng, J. E., & Sham, P. C. (2016). FAPI: Fast and accurate P-value Imputation for genome-wide association study. European journal of human genetics : EJHG, 24(5), 761-6. https://doi.org/10.1038/ejhg.2015.190
Kwan, Johnny S H, et al. "FAPI: Fast and accurate P-value Imputation for genome-wide association study." European journal of human genetics : EJHG vol. 24,5 (2016): 761-6. doi: https://doi.org/10.1038/ejhg.2015.190
Kwan JS, Li MX, Deng JE, Sham PC. FAPI: Fast and accurate P-value Imputation for genome-wide association study. Eur J Hum Genet. 2016 May;24(5):761-6. doi: 10.1038/ejhg.2015.190. Epub 2015 Aug 26. PMID: 26306642; PMCID: PMC4930094.
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From Locus Association to Mechanism of Gene Causality: The Devil Is in the Details.

Arteriosclerosis, thrombosis, and vascular biology

Miller CL, Pjanic M, Quertermous T.
PMID: 26399919
Arterioscler Thromb Vasc Biol. 2015 Oct;35(10):2079-2080. doi: 10.1161/ATVBAHA.115.306366.

No abstract available.

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Miller CL, Pjanic M, Quertermous T. From Locus Association to Mechanism of Gene Causality: The Devil Is in the Details. Arterioscler Thromb Vasc Biol. 2015;35(10):2079-2080doi: 10.1161/ATVBAHA.115.306366.
Miller, C. L., Pjanic, M., & Quertermous, T. (2015). From Locus Association to Mechanism of Gene Causality: The Devil Is in the Details. Arteriosclerosis, thrombosis, and vascular biology, 35(10), 2079-2080. https://doi.org/10.1161/ATVBAHA.115.306366
Miller, Clint L, et al. "From Locus Association to Mechanism of Gene Causality: The Devil Is in the Details." Arteriosclerosis, thrombosis, and vascular biology vol. 35,10 (2015): 2079-2080. doi: https://doi.org/10.1161/ATVBAHA.115.306366
Miller CL, Pjanic M, Quertermous T. From Locus Association to Mechanism of Gene Causality: The Devil Is in the Details. Arterioscler Thromb Vasc Biol. 2015 Oct;35(10):2079-2080. doi: 10.1161/ATVBAHA.115.306366. PMID: 26399919; PMCID: PMC4594207.
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Genetic polymorphisms of pharmacogenomic VIP variants in Li nationality of southern China.

Environmental toxicology and pharmacology

Ding Y, He P, He N, Li Q, Sun J, Yao J, Yi S, Xu H, Wu D, Wang X, Jin T.
PMID: 26901752
Environ Toxicol Pharmacol. 2016 Mar;42:237-42. doi: 10.1016/j.etap.2016.02.003. Epub 2016 Feb 20.

OBJECTIVES: The present study aimed to screen members of the Li nationality in southern China for genotype frequencies of VIP variants and to determine differences between the Li ethnicity and global human population samples in HapMap.METHODS: In this study,...

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Ding Y, He P, He N, et al. Genetic polymorphisms of pharmacogenomic VIP variants in Li nationality of southern China. Environ Toxicol Pharmacol. 2016;42:237-42doi: 10.1016/j.etap.2016.02.003.
Ding, Y., He, P., He, N., Li, Q., Sun, J., Yao, J., Yi, S., Xu, H., Wu, D., Wang, X., & Jin, T. (2016). Genetic polymorphisms of pharmacogenomic VIP variants in Li nationality of southern China. Environmental toxicology and pharmacology, 42237-42. https://doi.org/10.1016/j.etap.2016.02.003
Ding, Yipeng, et al. "Genetic polymorphisms of pharmacogenomic VIP variants in Li nationality of southern China." Environmental toxicology and pharmacology vol. 42 (2016): 237-42. doi: https://doi.org/10.1016/j.etap.2016.02.003
Ding Y, He P, He N, Li Q, Sun J, Yao J, Yi S, Xu H, Wu D, Wang X, Jin T. Genetic polymorphisms of pharmacogenomic VIP variants in Li nationality of southern China. Environ Toxicol Pharmacol. 2016 Mar;42:237-42. doi: 10.1016/j.etap.2016.02.003. Epub 2016 Feb 20. PMID: 26901752.
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Genomic prediction of coronary heart disease.

European heart journal

Abraham G, Havulinna AS, Bhalala OG, Byars SG, De Livera AM, Yetukuri L, Tikkanen E, Perola M, Schunkert H, Sijbrands EJ, Palotie A, Samani NJ, Salomaa V, Ripatti S, Inouye M.
PMID: 27655226
Eur Heart J. 2016 Nov 14;37(43):3267-3278. doi: 10.1093/eurheartj/ehw450. Epub 2016 Sep 21.

AIMS: Genetics plays an important role in coronary heart disease (CHD) but the clinical utility of genomic risk scores (GRSs) relative to clinical risk scores, such as the Framingham Risk Score (FRS), is unclear. Our aim was to construct...

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Abraham G, Havulinna AS, Bhalala OG, et al. Genomic prediction of coronary heart disease. Eur Heart J. 2016;37(43):3267-3278doi: 10.1093/eurheartj/ehw450.
Abraham, G., Havulinna, A. S., Bhalala, O. G., Byars, S. G., De Livera, A. M., Yetukuri, L., Tikkanen, E., Perola, M., Schunkert, H., Sijbrands, E. J., Palotie, A., Samani, N. J., Salomaa, V., Ripatti, S., & Inouye, M. (2016). Genomic prediction of coronary heart disease. European heart journal, 37(43), 3267-3278. https://doi.org/10.1093/eurheartj/ehw450
Abraham, Gad, et al. "Genomic prediction of coronary heart disease." European heart journal vol. 37,43 (2016): 3267-3278. doi: https://doi.org/10.1093/eurheartj/ehw450
Abraham G, Havulinna AS, Bhalala OG, Byars SG, De Livera AM, Yetukuri L, Tikkanen E, Perola M, Schunkert H, Sijbrands EJ, Palotie A, Samani NJ, Salomaa V, Ripatti S, Inouye M. Genomic prediction of coronary heart disease. Eur Heart J. 2016 Nov 14;37(43):3267-3278. doi: 10.1093/eurheartj/ehw450. Epub 2016 Sep 21. PMID: 27655226; PMCID: PMC5146693.
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Family or SNPs: what counts for hereditary risk of coronary artery disease?.

European heart journal

Schunkert H.
PMID: 26475834
Eur Heart J. 2016 Feb 07;37(6):568-71. doi: 10.1093/eurheartj/ehv545. Epub 2015 Oct 15.

No abstract available.

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Schunkert H. Family or SNPs: what counts for hereditary risk of coronary artery disease?. Eur Heart J. 2015;37(6):568-71doi: 10.1093/eurheartj/ehv545.
Schunkert, H. (2016). Family or SNPs: what counts for hereditary risk of coronary artery disease?. European heart journal, 37(6), 568-71. https://doi.org/10.1093/eurheartj/ehv545
Schunkert, Heribert. "Family or SNPs: what counts for hereditary risk of coronary artery disease?." European heart journal vol. 37,6 (2016): 568-71. doi: https://doi.org/10.1093/eurheartj/ehv545
Schunkert H. Family or SNPs: what counts for hereditary risk of coronary artery disease?. Eur Heart J. 2016 Feb 07;37(6):568-71. doi: 10.1093/eurheartj/ehv545. Epub 2015 Oct 15. PMID: 26475834.
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Single nucleotide polymorphisms on DNA methylation microarrays: precautions against confounding.

Epigenomics

Barrow TM, Byun HM.
PMID: 25531251
Epigenomics. 2014;6(6):577-9. doi: 10.2217/epi.14.55.

No abstract available.

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Barrow TM, Byun HM. Single nucleotide polymorphisms on DNA methylation microarrays: precautions against confounding. Epigenomics. 2014;6(6):577-9doi: 10.2217/epi.14.55.
Barrow, T. M., & Byun, H. M. (2014). Single nucleotide polymorphisms on DNA methylation microarrays: precautions against confounding. Epigenomics, 6(6), 577-9. https://doi.org/10.2217/epi.14.55
Barrow, Timothy M, and Byun, Hyang-Min. "Single nucleotide polymorphisms on DNA methylation microarrays: precautions against confounding." Epigenomics vol. 6,6 (2014): 577-9. doi: https://doi.org/10.2217/epi.14.55
Barrow TM, Byun HM. Single nucleotide polymorphisms on DNA methylation microarrays: precautions against confounding. Epigenomics. 2014;6(6):577-9. doi: 10.2217/epi.14.55. PMID: 25531251.
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[Progress of colorectal cancer by study the association of genome-wide].

Zhonghua liu xing bing xue za zhi = Zhonghua liuxingbingxue zazhi

Wu YJ, Yi HG.
PMID: 24378003
Zhonghua Liu Xing Bing Xue Za Zhi. 2013 Oct;34(10):1035-9.

No abstract available.

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Wu YJ, Yi HG. [Progress of colorectal cancer by study the association of genome-wide]. Zhonghua Liu Xing Bing Xue Za Zhi. 2013;34(10):1035-9
Wu, Y. J., & Yi, H. G. (2013). [Progress of colorectal cancer by study the association of genome-wide]. Zhonghua liu xing bing xue za zhi = Zhonghua liuxingbingxue zazhi, 34(10), 1035-9.
Wu, Ye-jiao, and Yi, Hong-gang. "[Progress of colorectal cancer by study the association of genome-wide]." Zhonghua liu xing bing xue za zhi = Zhonghua liuxingbingxue zazhi vol. 34,10 (2013): 1035-9.
Wu YJ, Yi HG. [Progress of colorectal cancer by study the association of genome-wide]. Zhonghua Liu Xing Bing Xue Za Zhi. 2013 Oct;34(10):1035-9. Chinese. PMID: 24378003.
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[Fine mapping of complex disease susceptibility loci].

Yi chuan = Hereditas

Song Q, Zhang H, Ma Y, Zhou G.
PMID: 24846913
Yi Chuan. 2014 Jan;36(1):2-10. doi: 10.3724/sp.j.1005.2014.00002.

Genome-wide association studies (GWAS) using single nucleotide polymorphism (SNP) markers have identified more than 3800 susceptibility loci for more than 660 diseases or traits. However, the most significantly associated variants or causative variants in these loci and their biological...

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Song Q, Zhang H, Ma Y, et al. [Fine mapping of complex disease susceptibility loci]. Yi Chuan. 2014;36(1):2-10doi: 10.3724/sp.j.1005.2014.00002.
Song, Q., Zhang, H., Ma, Y., & Zhou, G. (2014). [Fine mapping of complex disease susceptibility loci]. Yi chuan = Hereditas, 36(1), 2-10. https://doi.org/10.3724/sp.j.1005.2014.00002
Song, Qingfeng, et al. "[Fine mapping of complex disease susceptibility loci]." Yi chuan = Hereditas vol. 36,1 (2014): 2-10. doi: https://doi.org/10.3724/sp.j.1005.2014.00002
Song Q, Zhang H, Ma Y, Zhou G. [Fine mapping of complex disease susceptibility loci]. Yi Chuan. 2014 Jan;36(1):2-10. doi: 10.3724/sp.j.1005.2014.00002. Chinese. PMID: 24846913.
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Human Y-chromosome SNP characterization by multiplex amplified product-length polymorphism analysis.

Electrophoresis

Medina LS, Muzzio M, Schwab M, Costantino ML, Barreto G, Bailliet G.
PMID: 24846779
Electrophoresis. 2014 Sep;35(17):2524-7. doi: 10.1002/elps.201400020. Epub 2014 Jul 14.

We designed an allele-specific amplification protocol to optimize Y-chromosome SNP typing, which is an unavoidable step for defining the phylogenetic status of paternal lineages. It allows the simultaneous highly specific definition of up to six mutations in a single...

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Medina LS, Muzzio M, Schwab M, et al. Human Y-chromosome SNP characterization by multiplex amplified product-length polymorphism analysis. Electrophoresis. 2014;35(17):2524-7doi: 10.1002/elps.201400020.
Medina, L. S., Muzzio, M., Schwab, M., Costantino, M. L., Barreto, G., & Bailliet, G. (2014). Human Y-chromosome SNP characterization by multiplex amplified product-length polymorphism analysis. Electrophoresis, 35(17), 2524-7. https://doi.org/10.1002/elps.201400020
Medina, Laura Smeldy Jurado, et al. "Human Y-chromosome SNP characterization by multiplex amplified product-length polymorphism analysis." Electrophoresis vol. 35,17 (2014): 2524-7. doi: https://doi.org/10.1002/elps.201400020
Medina LS, Muzzio M, Schwab M, Costantino ML, Barreto G, Bailliet G. Human Y-chromosome SNP characterization by multiplex amplified product-length polymorphism analysis. Electrophoresis. 2014 Sep;35(17):2524-7. doi: 10.1002/elps.201400020. Epub 2014 Jul 14. PMID: 24846779.
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Integrative information theoretic network analysis for genome-wide association study of aspirin exacerbated respiratory disease in Korean population.

BMC medical genomics

Wang S, Jeong HH, Kim D, Wee K, Park HS, Kim SH, Sohn KA.
PMID: 28589859
BMC Med Genomics. 2017 May 24;10:31. doi: 10.1186/s12920-017-0266-1.

BACKGROUND: Aspirin Exacerbated Respiratory Disease (AERD) is a chronic medical condition that encompasses asthma, nasal polyposis, and hypersensitivity to aspirin and other non-steroidal anti-inflammatory drugs. Several previous studies have shown that part of the genetic effects of the disease...

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Wang S, Jeong HH, Kim D, et al. Integrative information theoretic network analysis for genome-wide association study of aspirin exacerbated respiratory disease in Korean population. BMC Med Genomics. 2017;10:31doi: 10.1186/s12920-017-0266-1.
Wang, S., Jeong, H. H., Kim, D., Wee, K., Park, H. S., Kim, S. H., & Sohn, K. A. (2017). Integrative information theoretic network analysis for genome-wide association study of aspirin exacerbated respiratory disease in Korean population. BMC medical genomics, 1031. https://doi.org/10.1186/s12920-017-0266-1
Wang, Sehee, et al. "Integrative information theoretic network analysis for genome-wide association study of aspirin exacerbated respiratory disease in Korean population." BMC medical genomics vol. 10 (2017): 31. doi: https://doi.org/10.1186/s12920-017-0266-1
Wang S, Jeong HH, Kim D, Wee K, Park HS, Kim SH, Sohn KA. Integrative information theoretic network analysis for genome-wide association study of aspirin exacerbated respiratory disease in Korean population. BMC Med Genomics. 2017 May 24;10:31. doi: 10.1186/s12920-017-0266-1. PMID: 28589859; PMCID: PMC5461529.
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Showing 1 to 12 of 388 entries