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NNT mediates redox-dependent pigmentation via a UVB- and MITF-independent mechanism.

Cell

Allouche J, Rachmin I, Adhikari K, Pardo LM, Lee JH, McConnell AM, Kato S, Fan S, Kawakami A, Suita Y, Wakamatsu K, Igras V, Zhang J, Navarro PP, Lugo CM, Noonan HR, Christie KA, Itin K, Mujahid N, Lo JA, Won CH, Evans CL, Weng QY, Wang H, Osseiran S, Lovas A, Németh I, Cozzio A, Navarini AA, Hsiao JJ, Nguyen N, Kemény LV, Iliopoulos O, Berking C, Ruzicka T, Gonzalez-José R, Bortolini MC, Canizales-Quinteros S, Acuna-Alonso V, Gallo C, Poletti G, Bedoya G, Rothhammer F, Ito S, Schiaffino MV, Chao LH, Kleinstiver BP, Tishkoff S, Zon LI, Nijsten T, Ruiz-Linares A, Fisher DE, Roider E.
PMID: 34233163
Cell. 2021 Aug 05;184(16):4268-4283.e20. doi: 10.1016/j.cell.2021.06.022. Epub 2021 Jul 06.

Ultraviolet (UV) light and incompletely understood genetic and epigenetic variations determine skin color. Here we describe an UV- and microphthalmia-associated transcription factor (MITF)-independent mechanism of skin pigmentation. Targeting the mitochondrial redox-regulating enzyme nicotinamide nucleotide transhydrogenase (NNT) resulted in cellular...

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Allouche J, Rachmin I, Adhikari K, et al. NNT mediates redox-dependent pigmentation via a UVB- and MITF-independent mechanism. Cell. 2021;184(16):4268-4283.e20doi: 10.1016/j.cell.2021.06.022.
Allouche, J., Rachmin, I., Adhikari, K., Pardo, L. M., Lee, J. H., McConnell, A. M., Kato, S., Fan, S., Kawakami, A., Suita, Y., Wakamatsu, K., Igras, V., Zhang, J., Navarro, P. P., Lugo, C. M., Noonan, H. R., Christie, K. A., Itin, K., Mujahid, N., Lo, J. A., Won, C. H., Evans, C. L., Weng, Q. Y., Wang, H., Osseiran, S., Lovas, A., Németh, I., Cozzio, A., Navarini, A. A., Hsiao, J. J., Nguyen, N., Kemény, L. V., Iliopoulos, O., Berking, C., Ruzicka, T., Gonzalez-José, R., Bortolini, M. C., Canizales-Quinteros, S., Acuna-Alonso, V., Gallo, C., Poletti, G., Bedoya, G., Rothhammer, F., Ito, S., Schiaffino, M. V., Chao, L. H., Kleinstiver, B. P., Tishkoff, S., Zon, L. I., Nijsten, T., Ruiz-Linares, A., Fisher, D. E., & Roider, E. (2021). NNT mediates redox-dependent pigmentation via a UVB- and MITF-independent mechanism. Cell, 184(16), 4268-4283.e20. https://doi.org/10.1016/j.cell.2021.06.022
Allouche, Jennifer, et al. "NNT mediates redox-dependent pigmentation via a UVB- and MITF-independent mechanism." Cell vol. 184,16 (2021): 4268-4283.e20. doi: https://doi.org/10.1016/j.cell.2021.06.022
Allouche J, Rachmin I, Adhikari K, Pardo LM, Lee JH, McConnell AM, Kato S, Fan S, Kawakami A, Suita Y, Wakamatsu K, Igras V, Zhang J, Navarro PP, Lugo CM, Noonan HR, Christie KA, Itin K, Mujahid N, Lo JA, Won CH, Evans CL, Weng QY, Wang H, Osseiran S, Lovas A, Németh I, Cozzio A, Navarini AA, Hsiao JJ, Nguyen N, Kemény LV, Iliopoulos O, Berking C, Ruzicka T, Gonzalez-José R, Bortolini MC, Canizales-Quinteros S, Acuna-Alonso V, Gallo C, Poletti G, Bedoya G, Rothhammer F, Ito S, Schiaffino MV, Chao LH, Kleinstiver BP, Tishkoff S, Zon LI, Nijsten T, Ruiz-Linares A, Fisher DE, Roider E. NNT mediates redox-dependent pigmentation via a UVB- and MITF-independent mechanism. Cell. 2021 Aug 05;184(16):4268-4283.e20. doi: 10.1016/j.cell.2021.06.022. Epub 2021 Jul 06. PMID: 34233163; PMCID: PMC8349839.
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Erratum: A protein-truncating R179X variant in RNF186 confers protection against ulcerative colitis.

Nature communications

Rivas MA, Graham D, Sulem P, Stevens C, Desch AN, Goyette P, Gudbjartsson D, Jonsdottir I, Thorsteinsdottir U, Degenhardt F, Mucha S, Kurki MI, Li D, D'Amato M, Annese V, Vermeire S, Weersma RK, Halfvarson J, Paavola-Sakki P, Lappalainen M, Lek M, Cummings B, Tukiainen T, Haritunians T, Halme L, Koskinen LL, Ananthakrishnan AN, Luo Y, Heap GA, Visschedijk MC, MacArthur DG, Neale BM, Ahmad T, Anderson CA, Brant SR, Duerr RH, Silverberg MS, Cho JH, Palotie A, Saavalainen P, Kontula K, Färkkilä M, McGovern DP, Franke A, Stefansson K, Rioux JD, Xavier RJ, Daly MJ.
PMID: 27619887
Nat Commun. 2016 Sep 13;7:12869. doi: 10.1038/ncomms12869.

No abstract available.

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Rivas MA, Graham D, Sulem P, et al. Erratum: A protein-truncating R179X variant in RNF186 confers protection against ulcerative colitis. Nat Commun. 2016;7:12869doi: 10.1038/ncomms12869.
Rivas, M. A., Graham, D., Sulem, P., Stevens, C., Desch, A. N., Goyette, P., Gudbjartsson, D., Jonsdottir, I., Thorsteinsdottir, U., Degenhardt, F., Mucha, S., Kurki, M. I., Li, D., D'Amato, M., Annese, V., Vermeire, S., Weersma, R. K., Halfvarson, J., Paavola-Sakki, P., Lappalainen, M., Lek, M., Cummings, B., Tukiainen, T., Haritunians, T., Halme, L., Koskinen, L. L., Ananthakrishnan, A. N., Luo, Y., Heap, G. A., Visschedijk, M. C., MacArthur, D. G., Neale, B. M., Ahmad, T., Anderson, C. A., Brant, S. R., Duerr, R. H., Silverberg, M. S., Cho, J. H., Palotie, A., Saavalainen, P., Kontula, K., Färkkilä, M., McGovern, D. P., Franke, A., Stefansson, K., Rioux, J. D., Xavier, R. J., & Daly, M. J. (2016). Erratum: A protein-truncating R179X variant in RNF186 confers protection against ulcerative colitis. Nature communications, 712869. https://doi.org/10.1038/ncomms12869
Rivas, Manuel A, et al. "Erratum: A protein-truncating R179X variant in RNF186 confers protection against ulcerative colitis." Nature communications vol. 7 (2016): 12869. doi: https://doi.org/10.1038/ncomms12869
Rivas MA, Graham D, Sulem P, Stevens C, Desch AN, Goyette P, Gudbjartsson D, Jonsdottir I, Thorsteinsdottir U, Degenhardt F, Mucha S, Kurki MI, Li D, D'Amato M, Annese V, Vermeire S, Weersma RK, Halfvarson J, Paavola-Sakki P, Lappalainen M, Lek M, Cummings B, Tukiainen T, Haritunians T, Halme L, Koskinen LL, Ananthakrishnan AN, Luo Y, Heap GA, Visschedijk MC, MacArthur DG, Neale BM, Ahmad T, Anderson CA, Brant SR, Duerr RH, Silverberg MS, Cho JH, Palotie A, Saavalainen P, Kontula K, Färkkilä M, McGovern DP, Franke A, Stefansson K, Rioux JD, Xavier RJ, Daly MJ. Erratum: A protein-truncating R179X variant in RNF186 confers protection against ulcerative colitis. Nat Commun. 2016 Sep 13;7:12869. doi: 10.1038/ncomms12869. PMID: 27619887; PMCID: PMC5027274.
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Glucocorticoid-Induced TNF Receptor Family-Related Protein Ligand is Requisite for Optimal Functioning of Regulatory CD4(+) T Cells.

Frontiers in immunology

Liao G, O'Keeffe MS, Wang G, van Driel B, de Waal Malefyt R, Reinecker HC, Herzog RW, Terhorst C.
PMID: 24550919
Front Immunol. 2014 Feb 03;5:35. doi: 10.3389/fimmu.2014.00035. eCollection 2014.

Glucocorticoid-induced tumor necrosis factor receptor family-related protein (TNFRSF18, CD357) is constitutively expressed on regulatory T cells (Tregs) and is inducible on effector T cells. In this report, we examine the role of glucocorticoid-induced TNF receptor family-related protein ligand (GITR-L),...

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Liao G, O'Keeffe MS, Wang G, et al. Glucocorticoid-Induced TNF Receptor Family-Related Protein Ligand is Requisite for Optimal Functioning of Regulatory CD4(+) T Cells. Front Immunol. 2014;5:35doi: 10.3389/fimmu.2014.00035.
Liao, G., O'Keeffe, M. S., Wang, G., van Driel, B., de Waal Malefyt, R., Reinecker, H. C., Herzog, R. W., & Terhorst, C. (2014). Glucocorticoid-Induced TNF Receptor Family-Related Protein Ligand is Requisite for Optimal Functioning of Regulatory CD4(+) T Cells. Frontiers in immunology, 535. https://doi.org/10.3389/fimmu.2014.00035
Liao, Gongxian, et al. "Glucocorticoid-Induced TNF Receptor Family-Related Protein Ligand is Requisite for Optimal Functioning of Regulatory CD4(+) T Cells." Frontiers in immunology vol. 5 (2014): 35. doi: https://doi.org/10.3389/fimmu.2014.00035
Liao G, O'Keeffe MS, Wang G, van Driel B, de Waal Malefyt R, Reinecker HC, Herzog RW, Terhorst C. Glucocorticoid-Induced TNF Receptor Family-Related Protein Ligand is Requisite for Optimal Functioning of Regulatory CD4(+) T Cells. Front Immunol. 2014 Feb 03;5:35. doi: 10.3389/fimmu.2014.00035. eCollection 2014. PMID: 24550919; PMCID: PMC3909995.
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HELZ2 Is an IFN Effector Mediating Suppression of Dengue Virus.

Frontiers in microbiology

Fusco DN, Pratt H, Kandilas S, Cheon SS, Lin W, Cronkite DA, Basavappa M, Jeffrey KL, Anselmo A, Sadreyev R, Yapp C, Shi X, O'Sullivan JF, Gerszten RE, Tomaru T, Yoshino S, Satoh T, Chung RT.
PMID: 28265266
Front Microbiol. 2017 Feb 20;8:240. doi: 10.3389/fmicb.2017.00240. eCollection 2017.

Flaviviral infections including dengue virus are an increasing clinical problem worldwide. Dengue infection triggers host production of the type 1 IFN, IFN alpha, one of the strongest and broadest acting antivirals known. However, dengue virus subverts host IFN signaling...

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Fusco DN, Pratt H, Kandilas S, et al. HELZ2 Is an IFN Effector Mediating Suppression of Dengue Virus. Front Microbiol. 2017;8:240doi: 10.3389/fmicb.2017.00240.
Fusco, D. N., Pratt, H., Kandilas, S., Cheon, S. S., Lin, W., Cronkite, D. A., Basavappa, M., Jeffrey, K. L., Anselmo, A., Sadreyev, R., Yapp, C., Shi, X., O'Sullivan, J. F., Gerszten, R. E., Tomaru, T., Yoshino, S., Satoh, T., & Chung, R. T. (2017). HELZ2 Is an IFN Effector Mediating Suppression of Dengue Virus. Frontiers in microbiology, 8240. https://doi.org/10.3389/fmicb.2017.00240
Fusco, Dahlene N, et al. "HELZ2 Is an IFN Effector Mediating Suppression of Dengue Virus." Frontiers in microbiology vol. 8 (2017): 240. doi: https://doi.org/10.3389/fmicb.2017.00240
Fusco DN, Pratt H, Kandilas S, Cheon SS, Lin W, Cronkite DA, Basavappa M, Jeffrey KL, Anselmo A, Sadreyev R, Yapp C, Shi X, O'Sullivan JF, Gerszten RE, Tomaru T, Yoshino S, Satoh T, Chung RT. HELZ2 Is an IFN Effector Mediating Suppression of Dengue Virus. Front Microbiol. 2017 Feb 20;8:240. doi: 10.3389/fmicb.2017.00240. eCollection 2017. PMID: 28265266; PMCID: PMC5316548.
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Uncoupling of the profibrotic and hemostatic effects of thrombin in lung fibrosis.

JCI insight

Shea BS, Probst CK, Brazee PL, Rotile NJ, Blasi F, Weinreb PH, Black KE, Sosnovik DE, Van Cott EM, Violette SM, Caravan P, Tager AM.
PMID: 28469072
JCI Insight. 2017 May 04;2(9). doi: 10.1172/jci.insight.86608. eCollection 2017 May 04.

Fibrotic lung disease, most notably idiopathic pulmonary fibrosis (IPF), is thought to result from aberrant wound-healing responses to repetitive lung injury. Increased vascular permeability is a cardinal response to tissue injury, but whether it is mechanistically linked to lung...

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Shea BS, Probst CK, Brazee PL, et al. Uncoupling of the profibrotic and hemostatic effects of thrombin in lung fibrosis. JCI Insight. 2017;2(9)doi: 10.1172/jci.insight.86608.
Shea, B. S., Probst, C. K., Brazee, P. L., Rotile, N. J., Blasi, F., Weinreb, P. H., Black, K. E., Sosnovik, D. E., Van Cott, E. M., Violette, S. M., Caravan, P., & Tager, A. M. (2017). Uncoupling of the profibrotic and hemostatic effects of thrombin in lung fibrosis. JCI insight, 2(9), . https://doi.org/10.1172/jci.insight.86608
Shea, Barry S, et al. "Uncoupling of the profibrotic and hemostatic effects of thrombin in lung fibrosis." JCI insight vol. 2,9 (2017). doi: https://doi.org/10.1172/jci.insight.86608
Shea BS, Probst CK, Brazee PL, Rotile NJ, Blasi F, Weinreb PH, Black KE, Sosnovik DE, Van Cott EM, Violette SM, Caravan P, Tager AM. Uncoupling of the profibrotic and hemostatic effects of thrombin in lung fibrosis. JCI Insight. 2017 May 04;2(9). doi: 10.1172/jci.insight.86608. eCollection 2017 May 04. PMID: 28469072; PMCID: PMC5414562.
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The Role of Autophagy-Related Proteins in Candida albicans Infections.

Pathogens (Basel, Switzerland)

Tam JM, Mansour MK, Acharya M, Sokolovska A, Timmons AK, Lacy-Hulbert A, Vyas JM.
PMID: 27043636
Pathogens. 2016 Mar 29;5(2). doi: 10.3390/pathogens5020034.

Autophagy plays an important role in maintaining cell homeostasis by providing nutrients during periods of starvation and removing damaged organelles from the cytoplasm. A marker in the autophagic process is the reversible conjugation of LC3, a membrane scaffolding protein,...

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Tam JM, Mansour MK, Acharya M, et al. The Role of Autophagy-Related Proteins in Candida albicans Infections. Pathogens. 2016;5(2)doi: 10.3390/pathogens5020034.
Tam, J. M., Mansour, M. K., Acharya, M., Sokolovska, A., Timmons, A. K., Lacy-Hulbert, A., & Vyas, J. M. (2016). The Role of Autophagy-Related Proteins in Candida albicans Infections. Pathogens (Basel, Switzerland), 5(2), . https://doi.org/10.3390/pathogens5020034
Tam, Jenny M, et al. "The Role of Autophagy-Related Proteins in Candida albicans Infections." Pathogens (Basel, Switzerland) vol. 5,2 (2016). doi: https://doi.org/10.3390/pathogens5020034
Tam JM, Mansour MK, Acharya M, Sokolovska A, Timmons AK, Lacy-Hulbert A, Vyas JM. The Role of Autophagy-Related Proteins in Candida albicans Infections. Pathogens. 2016 Mar 29;5(2). doi: 10.3390/pathogens5020034. PMID: 27043636; PMCID: PMC4931385.
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Attaching-and-Effacing Pathogens Exploit Junction Regulatory Activities of N-WASP and SNX9 to Disrupt the Intestinal Barrier.

Cellular and molecular gastroenterology and hepatology

Garber JJ, Mallick EM, Scanlon KM, Turner JR, Donnenberg MS, Leong JM, Snapper SB.
PMID: 29675452
Cell Mol Gastroenterol Hepatol. 2017 Dec 15;5(3):273-288. doi: 10.1016/j.jcmgh.2017.11.015. eCollection 2018 Mar.

BACKGROUND & AIMS: Neural Wiskott-Aldrich Syndrome protein (N-WASP) is a key regulator of the actin cytoskeleton in epithelial tissues and is poised to mediate cytoskeletal-dependent aspects of apical junction complex (AJC) homeostasis. Attaching-and-effacing (AE) pathogens disrupt this homeostasis through...

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Garber JJ, Mallick EM, Scanlon KM, et al. Attaching-and-Effacing Pathogens Exploit Junction Regulatory Activities of N-WASP and SNX9 to Disrupt the Intestinal Barrier. Cell Mol Gastroenterol Hepatol. 2017;5(3):273-288doi: 10.1016/j.jcmgh.2017.11.015.
Garber, J. J., Mallick, E. M., Scanlon, K. M., Turner, J. R., Donnenberg, M. S., Leong, J. M., & Snapper, S. B. (2018). Attaching-and-Effacing Pathogens Exploit Junction Regulatory Activities of N-WASP and SNX9 to Disrupt the Intestinal Barrier. Cellular and molecular gastroenterology and hepatology, 5(3), 273-288. https://doi.org/10.1016/j.jcmgh.2017.11.015
Garber, John J, et al. "Attaching-and-Effacing Pathogens Exploit Junction Regulatory Activities of N-WASP and SNX9 to Disrupt the Intestinal Barrier." Cellular and molecular gastroenterology and hepatology vol. 5,3 (2018): 273-288. doi: https://doi.org/10.1016/j.jcmgh.2017.11.015
Garber JJ, Mallick EM, Scanlon KM, Turner JR, Donnenberg MS, Leong JM, Snapper SB. Attaching-and-Effacing Pathogens Exploit Junction Regulatory Activities of N-WASP and SNX9 to Disrupt the Intestinal Barrier. Cell Mol Gastroenterol Hepatol. 2017 Dec 15;5(3):273-288. doi: 10.1016/j.jcmgh.2017.11.015. eCollection 2018 Mar. PMID: 29675452; PMCID: PMC5904039.
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Yield of Random Biopsies During Colonoscopies in Inflammatory Bowel Disease Patients Undergoing Dysplasia Surveillance.

Inflammatory bowel diseases

Hu AB, Burke KE, Kochar B, Ananthakrishnan AN.
PMID: 32812048
Inflamm Bowel Dis. 2021 May 17;27(6):779-786. doi: 10.1093/ibd/izaa205.

BACKGROUND: The development of chromoendoscopy (CE) and high definition endoscopy (HDE) has improved detection of subtle colonic dysplasia in patients with inflammatory bowel diseases (IBDs). The role of random biopsies for dysplasia surveillance is unclear.METHODS: We reviewed patients with...

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Hu AB, Burke KE, Kochar B, et al. Yield of Random Biopsies During Colonoscopies in Inflammatory Bowel Disease Patients Undergoing Dysplasia Surveillance. Inflamm Bowel Dis. 2021;27(6):779-786doi: 10.1093/ibd/izaa205.
Hu, A. B., Burke, K. E., Kochar, B., & Ananthakrishnan, A. N. (2021). Yield of Random Biopsies During Colonoscopies in Inflammatory Bowel Disease Patients Undergoing Dysplasia Surveillance. Inflammatory bowel diseases, 27(6), 779-786. https://doi.org/10.1093/ibd/izaa205
Hu, Anne B, et al. "Yield of Random Biopsies During Colonoscopies in Inflammatory Bowel Disease Patients Undergoing Dysplasia Surveillance." Inflammatory bowel diseases vol. 27,6 (2021): 779-786. doi: https://doi.org/10.1093/ibd/izaa205
Hu AB, Burke KE, Kochar B, Ananthakrishnan AN. Yield of Random Biopsies During Colonoscopies in Inflammatory Bowel Disease Patients Undergoing Dysplasia Surveillance. Inflamm Bowel Dis. 2021 May 17;27(6):779-786. doi: 10.1093/ibd/izaa205. PMID: 32812048; PMCID: PMC8128394.
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A Chemical Biology View of Bioactive Small Molecules and a Binder-Based Approach to Connect Biology to Precision Medicines.

Israel journal of chemistry

Schreiber SL.
PMID: 31123369
Isr J Chem. 2019 Feb;59(1):52-59. doi: 10.1002/ijch.201800113. Epub 2018 Oct 30.

No abstract available.

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Schreiber SL. A Chemical Biology View of Bioactive Small Molecules and a Binder-Based Approach to Connect Biology to Precision Medicines. Isr J Chem. 2018;59(1):52-59doi: 10.1002/ijch.201800113.
Schreiber, S. L. (2019). A Chemical Biology View of Bioactive Small Molecules and a Binder-Based Approach to Connect Biology to Precision Medicines. Israel journal of chemistry, 59(1), 52-59. https://doi.org/10.1002/ijch.201800113
Schreiber, Stuart L. "A Chemical Biology View of Bioactive Small Molecules and a Binder-Based Approach to Connect Biology to Precision Medicines." Israel journal of chemistry vol. 59,1 (2019): 52-59. doi: https://doi.org/10.1002/ijch.201800113
Schreiber SL. A Chemical Biology View of Bioactive Small Molecules and a Binder-Based Approach to Connect Biology to Precision Medicines. Isr J Chem. 2019 Feb;59(1):52-59. doi: 10.1002/ijch.201800113. Epub 2018 Oct 30. PMID: 31123369; PMCID: PMC6528670.
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TIME (Tumor Immunity in the MicroEnvironment) classification based on tumor .

Oncoimmunology

Hamada T, Soong TR, Masugi Y, Kosumi K, Nowak JA, da Silva A, Mu XJ, Twombly TS, Koh H, Yang J, Song M, Liu L, Gu M, Shi Y, Nosho K, Morikawa T, Inamura K, Shukla SA, Wu CJ, Garraway LA, Zhang X, Wu K, Meyerhardt JA, Chan AT, Glickman JN, Rodig SJ, Freeman GJ, Fuchs CS, Nishihara R, Giannakis M, Ogino S.
PMID: 29900052
Oncoimmunology. 2018 Mar 19;7(7):e1442999. doi: 10.1080/2162402X.2018.1442999. eCollection 2018.

Inhibitors targeting the

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Hamada T, Soong TR, Masugi Y, et al. TIME (Tumor Immunity in the MicroEnvironment) classification based on tumor . Oncoimmunology. 2018;7(7):e1442999doi: 10.1080/2162402X.2018.1442999.
Hamada, T., Soong, T. R., Masugi, Y., Kosumi, K., Nowak, J. A., da Silva, A., Mu, X. J., Twombly, T. S., Koh, H., Yang, J., Song, M., Liu, L., Gu, M., Shi, Y., Nosho, K., Morikawa, T., Inamura, K., Shukla, S. A., Wu, C. J., Garraway, L. A., Zhang, X., Wu, K., Meyerhardt, J. A., Chan, A. T., Glickman, J. N., Rodig, S. J., Freeman, G. J., Fuchs, C. S., Nishihara, R., Giannakis, M., & Ogino, S. (2018). TIME (Tumor Immunity in the MicroEnvironment) classification based on tumor . Oncoimmunology, 7(7), e1442999. https://doi.org/10.1080/2162402X.2018.1442999
Hamada, Tsuyoshi, et al. "TIME (Tumor Immunity in the MicroEnvironment) classification based on tumor ." Oncoimmunology vol. 7,7 (2018): e1442999. doi: https://doi.org/10.1080/2162402X.2018.1442999
Hamada T, Soong TR, Masugi Y, Kosumi K, Nowak JA, da Silva A, Mu XJ, Twombly TS, Koh H, Yang J, Song M, Liu L, Gu M, Shi Y, Nosho K, Morikawa T, Inamura K, Shukla SA, Wu CJ, Garraway LA, Zhang X, Wu K, Meyerhardt JA, Chan AT, Glickman JN, Rodig SJ, Freeman GJ, Fuchs CS, Nishihara R, Giannakis M, Ogino S. TIME (Tumor Immunity in the MicroEnvironment) classification based on tumor . Oncoimmunology. 2018 Mar 19;7(7):e1442999. doi: 10.1080/2162402X.2018.1442999. eCollection 2018. PMID: 29900052; PMCID: PMC5993482.
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American Gut: an Open Platform for Citizen Science Microbiome Research.

mSystems

McDonald D, Hyde E, Debelius JW, Morton JT, Gonzalez A, Ackermann G, Aksenov AA, Behsaz B, Brennan C, Chen Y, DeRight Goldasich L, Dorrestein PC, Dunn RR, Fahimipour AK, Gaffney J, Gilbert JA, Gogul G, Green JL, Hugenholtz P, Humphrey G, Huttenhower C, Jackson MA, Janssen S, Jeste DV, Jiang L, Kelley ST, Knights D, Kosciolek T, Ladau J, Leach J, Marotz C, Meleshko D, Melnik AV, Metcalf JL, Mohimani H, Montassier E, Navas-Molina J, Nguyen TT, Peddada S, Pevzner P, Pollard KS, Rahnavard G, Robbins-Pianka A, Sangwan N, Shorenstein J, Smarr L, Song SJ, Spector T, Swafford AD, Thackray VG, Thompson LR, Tripathi A, Vázquez-Baeza Y, Vrbanac A, Wischmeyer P, Wolfe E, Zhu Q, Knight R.
PMID: 29795809
mSystems. 2018 May 15;3(3). doi: 10.1128/mSystems.00031-18. eCollection 2018.

Although much work has linked the human microbiome to specific phenotypes and lifestyle variables, data from different projects have been challenging to integrate and the extent of microbial and molecular diversity in human stool remains unknown. Using standardized protocols...

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McDonald D, Hyde E, Debelius JW, et al. American Gut: an Open Platform for Citizen Science Microbiome Research. mSystems. 2018;3(3)doi: 10.1128/mSystems.00031-18.
McDonald, D., Hyde, E., Debelius, J. W., Morton, J. T., Gonzalez, A., Ackermann, G., Aksenov, A. A., Behsaz, B., Brennan, C., Chen, Y., DeRight Goldasich, L., Dorrestein, P. C., Dunn, R. R., Fahimipour, A. K., Gaffney, J., Gilbert, J. A., Gogul, G., Green, J. L., Hugenholtz, P., Humphrey, G., Huttenhower, C., Jackson, M. A., Janssen, S., Jeste, D. V., Jiang, L., Kelley, S. T., Knights, D., Kosciolek, T., Ladau, J., Leach, J., Marotz, C., Meleshko, D., Melnik, A. V., Metcalf, J. L., Mohimani, H., Montassier, E., Navas-Molina, J., Nguyen, T. T., Peddada, S., Pevzner, P., Pollard, K. S., Rahnavard, G., Robbins-Pianka, A., Sangwan, N., Shorenstein, J., Smarr, L., Song, S. J., Spector, T., Swafford, A. D., Thackray, V. G., Thompson, L. R., Tripathi, A., Vázquez-Baeza, Y., Vrbanac, A., Wischmeyer, P., Wolfe, E., Zhu, Q., & Knight, R. (2018). American Gut: an Open Platform for Citizen Science Microbiome Research. mSystems, 3(3), . https://doi.org/10.1128/mSystems.00031-18
McDonald, Daniel, et al. "American Gut: an Open Platform for Citizen Science Microbiome Research." mSystems vol. 3,3 (2018). doi: https://doi.org/10.1128/mSystems.00031-18
McDonald D, Hyde E, Debelius JW, Morton JT, Gonzalez A, Ackermann G, Aksenov AA, Behsaz B, Brennan C, Chen Y, DeRight Goldasich L, Dorrestein PC, Dunn RR, Fahimipour AK, Gaffney J, Gilbert JA, Gogul G, Green JL, Hugenholtz P, Humphrey G, Huttenhower C, Jackson MA, Janssen S, Jeste DV, Jiang L, Kelley ST, Knights D, Kosciolek T, Ladau J, Leach J, Marotz C, Meleshko D, Melnik AV, Metcalf JL, Mohimani H, Montassier E, Navas-Molina J, Nguyen TT, Peddada S, Pevzner P, Pollard KS, Rahnavard G, Robbins-Pianka A, Sangwan N, Shorenstein J, Smarr L, Song SJ, Spector T, Swafford AD, Thackray VG, Thompson LR, Tripathi A, Vázquez-Baeza Y, Vrbanac A, Wischmeyer P, Wolfe E, Zhu Q, Knight R. American Gut: an Open Platform for Citizen Science Microbiome Research. mSystems. 2018 May 15;3(3). doi: 10.1128/mSystems.00031-18. eCollection 2018. PMID: 29795809; PMCID: PMC5954204.
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SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes.

Nature medicine

Sungnak W, Huang N, Bécavin C, Berg M, Queen R, Litvinukova M, Talavera-López C, Maatz H, Reichart D, Sampaziotis F, Worlock KB, Yoshida M, Barnes JL.
PMID: 32327758
Nat Med. 2020 May;26(5):681-687. doi: 10.1038/s41591-020-0868-6. Epub 2020 Apr 23.

We investigated SARS-CoV-2 potential tropism by surveying expression of viral entry-associated genes in single-cell RNA-sequencing data from multiple tissues from healthy human donors. We co-detected these transcripts in specific respiratory, corneal and intestinal epithelial cells, potentially explaining the high...

Cite
Sungnak W, Huang N, Bécavin C, et al. SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes. Nat Med. 2020;26(5):681-687doi: 10.1038/s41591-020-0868-6.
Sungnak, W., Huang, N., Bécavin, C., Berg, M., Queen, R., Litvinukova, M., Talavera-López, C., Maatz, H., Reichart, D., Sampaziotis, F., Worlock, K. B., Yoshida, M., Barnes, J. L. (2020). SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes. Nature medicine, 26(5), 681-687. https://doi.org/10.1038/s41591-020-0868-6
Sungnak, Waradon, et al. "SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes." Nature medicine vol. 26,5 (2020): 681-687. doi: https://doi.org/10.1038/s41591-020-0868-6
Sungnak W, Huang N, Bécavin C, Berg M, Queen R, Litvinukova M, Talavera-López C, Maatz H, Reichart D, Sampaziotis F, Worlock KB, Yoshida M, Barnes JL. SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes. Nat Med. 2020 May;26(5):681-687. doi: 10.1038/s41591-020-0868-6. Epub 2020 Apr 23. PMID: 32327758; PMCID: PMC8637938.
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