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Progression of 'OMICS' methodologies for understanding the pathogenicity of Corynebacterium pseudotuberculosis: the Brazilian experience.

Computational and structural biotechnology journal

Dorella FA, Gala-Garcia A, Pinto AC, Sarrouh B, Antunes CA, Ribeiro D, Aburjaile FF, Fiaux KK, Guimarães LC, Seyffert N, El-Aouar RA, Silva R, Hassan SS, Castro TL, Marques WS, Ramos R, Carneiro A, de Sá P, Miyoshi A, Azevedo V, Silva A.
PMID: 24688721
Comput Struct Biotechnol J. 2013 Oct 13;6:e201303013. doi: 10.5936/csbj.201303013. eCollection 2013.

Since the first successful attempt at sequencing the Corynebacterium pseudotuberculosis genome, large amounts of genomic, transcriptomic and proteomic data have been generated. C. pseudotuberculosis is an interesting bacterium due to its great zoonotic potential and because it causes considerable...

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Dorella FA, Gala-Garcia A, Pinto AC, et al. Progression of 'OMICS' methodologies for understanding the pathogenicity of Corynebacterium pseudotuberculosis: the Brazilian experience. Comput Struct Biotechnol J. 2013;6:e201303013doi: 10.5936/csbj.201303013.
Dorella, F. A., Gala-Garcia, A., Pinto, A. C., Sarrouh, B., Antunes, C. A., Ribeiro, D., Aburjaile, F. F., Fiaux, K. K., Guimarães, L. C., Seyffert, N., El-Aouar, R. A., Silva, R., Hassan, S. S., Castro, T. L., Marques, W. S., Ramos, R., Carneiro, A., de Sá, P., Miyoshi, A., Azevedo, V., & Silva, A. (2013). Progression of 'OMICS' methodologies for understanding the pathogenicity of Corynebacterium pseudotuberculosis: the Brazilian experience. Computational and structural biotechnology journal, 6e201303013. https://doi.org/10.5936/csbj.201303013
Dorella, Fernanda A, et al. "Progression of 'OMICS' methodologies for understanding the pathogenicity of Corynebacterium pseudotuberculosis: the Brazilian experience." Computational and structural biotechnology journal vol. 6 (2013): e201303013. doi: https://doi.org/10.5936/csbj.201303013
Dorella FA, Gala-Garcia A, Pinto AC, Sarrouh B, Antunes CA, Ribeiro D, Aburjaile FF, Fiaux KK, Guimarães LC, Seyffert N, El-Aouar RA, Silva R, Hassan SS, Castro TL, Marques WS, Ramos R, Carneiro A, de Sá P, Miyoshi A, Azevedo V, Silva A. Progression of 'OMICS' methodologies for understanding the pathogenicity of Corynebacterium pseudotuberculosis: the Brazilian experience. Comput Struct Biotechnol J. 2013 Oct 13;6:e201303013. doi: 10.5936/csbj.201303013. eCollection 2013. PMID: 24688721; PMCID: PMC3962224.
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Operational definitions of asthma in recent epidemiological studies are inconsistent.

Clinical and translational allergy

Sá-Sousa A, Jacinto T, Azevedo LF, Morais-Almeida M, Robalo-Cordeiro C, Bugalho-Almeida A, Bousquet J, Fonseca JA.
PMID: 25136441
Clin Transl Allergy. 2014 Aug 04;4:24. doi: 10.1186/2045-7022-4-24. eCollection 2014.

OBJECTIVE: The best combination of questions to define asthma in epidemiological asthma studies is not known. We summarized the operational definitions of asthma used in prevalence studies and empirically assess how asthma prevalence estimates vary depending on the definition...

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Sá-Sousa A, Jacinto T, Azevedo LF, et al. Operational definitions of asthma in recent epidemiological studies are inconsistent. Clin Transl Allergy. 2014;4:24doi: 10.1186/2045-7022-4-24.
Sá-Sousa, A., Jacinto, T., Azevedo, L. F., Morais-Almeida, M., Robalo-Cordeiro, C., Bugalho-Almeida, A., Bousquet, J., & Fonseca, J. A. (2014). Operational definitions of asthma in recent epidemiological studies are inconsistent. Clinical and translational allergy, 424. https://doi.org/10.1186/2045-7022-4-24
Sá-Sousa, Ana, et al. "Operational definitions of asthma in recent epidemiological studies are inconsistent." Clinical and translational allergy vol. 4 (2014): 24. doi: https://doi.org/10.1186/2045-7022-4-24
Sá-Sousa A, Jacinto T, Azevedo LF, Morais-Almeida M, Robalo-Cordeiro C, Bugalho-Almeida A, Bousquet J, Fonseca JA. Operational definitions of asthma in recent epidemiological studies are inconsistent. Clin Transl Allergy. 2014 Aug 04;4:24. doi: 10.1186/2045-7022-4-24. eCollection 2014. PMID: 25136441; PMCID: PMC4136946.
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Apolipoprotein E Allelic Frequency Altered in Women with Early-onset Breast Cancer.

Breast cancer : basic and clinical research

Porrata-Doria T, Matta JL, Acevedo SF.
PMID: 20697532
Breast Cancer (Auckl). 2010 May 24;4:43-8.

Among women, the most prevalent type of cancer is breast cancer, affecting 1 out of every 8 women in the United States; in Puerto Rico, 70 out of every 100,000 will develop some type of breast cancer. Therefore, a...

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Porrata-Doria T, Matta JL, Acevedo SF. Apolipoprotein E Allelic Frequency Altered in Women with Early-onset Breast Cancer. Breast Cancer (Auckl). 2010;4:43-8
Porrata-Doria, T., Matta, J. L., & Acevedo, S. F. (2010). Apolipoprotein E Allelic Frequency Altered in Women with Early-onset Breast Cancer. Breast cancer : basic and clinical research, 443-8.
Porrata-Doria, Tirtsa, et al. "Apolipoprotein E Allelic Frequency Altered in Women with Early-onset Breast Cancer." Breast cancer : basic and clinical research vol. 4 (2010): 43-8.
Porrata-Doria T, Matta JL, Acevedo SF. Apolipoprotein E Allelic Frequency Altered in Women with Early-onset Breast Cancer. Breast Cancer (Auckl). 2010 May 24;4:43-8. PMID: 20697532; PMCID: PMC2914274.
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Control of Allergic Rhinitis and Asthma Test (CARAT) can be used to assess individual patients over time.

Clinical and translational allergy

Fonseca JA, Nogueira-Silva L, Morais-Almeida M, Sa-Sousa A, Azevedo LF, Ferreira J, Branco-Ferreira M, Rodrigues-Alves R, Bugalho-Almeida A, Bousquet J.
PMID: 22935298
Clin Transl Allergy. 2012 Aug 30;2(1):16. doi: 10.1186/2045-7022-2-16.

BACKGROUND: The Control of Allergic Rhinitis and Asthma Test (CARAT10) has been proposed as the first tool to implement the Allergic Rhinitis and its Impact on Asthma initiative guidelines in clinical practice. To serve this purpose, it must have...

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Fonseca JA, Nogueira-Silva L, Morais-Almeida M, et al. Control of Allergic Rhinitis and Asthma Test (CARAT) can be used to assess individual patients over time. Clin Transl Allergy. 2012;2(1):16doi: 10.1186/2045-7022-2-16.
Fonseca, J. A., Nogueira-Silva, L., Morais-Almeida, M., Sa-Sousa, A., Azevedo, L. F., Ferreira, J., Branco-Ferreira, M., Rodrigues-Alves, R., Bugalho-Almeida, A., & Bousquet, J. (2012). Control of Allergic Rhinitis and Asthma Test (CARAT) can be used to assess individual patients over time. Clinical and translational allergy, 2(1), 16. https://doi.org/10.1186/2045-7022-2-16
Fonseca, Joao A, et al. "Control of Allergic Rhinitis and Asthma Test (CARAT) can be used to assess individual patients over time." Clinical and translational allergy vol. 2,1 (2012): 16. doi: https://doi.org/10.1186/2045-7022-2-16
Fonseca JA, Nogueira-Silva L, Morais-Almeida M, Sa-Sousa A, Azevedo LF, Ferreira J, Branco-Ferreira M, Rodrigues-Alves R, Bugalho-Almeida A, Bousquet J. Control of Allergic Rhinitis and Asthma Test (CARAT) can be used to assess individual patients over time. Clin Transl Allergy. 2012 Aug 30;2(1):16. doi: 10.1186/2045-7022-2-16. PMID: 22935298; PMCID: PMC3520832.
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Necrotizing sialometaplasia of palate: a case report.

Case reports in pathology

Garcia NG, Oliveira DT, Faustino SE, Azevedo AL.
PMID: 22957289
Case Rep Pathol. 2012;2012:679325. doi: 10.1155/2012/679325. Epub 2012 Aug 22.

Background. Necrotizing sialometaplasia (NS) is an uncommon benign reactive necrotizing inflammatory process involving minor salivary gland that often mimics malignancy both clinically and histopathologically. Case Report. We report the case of a healthy 26-year-old man with a painless swelling...

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Garcia NG, Oliveira DT, Faustino SE, et al. Necrotizing sialometaplasia of palate: a case report. Case Rep Pathol. 2012;2012:679325doi: 10.1155/2012/679325.
Garcia, N. G., Oliveira, D. T., Faustino, S. E., & Azevedo, A. L. (2012). Necrotizing sialometaplasia of palate: a case report. Case reports in pathology, 2012679325. https://doi.org/10.1155/2012/679325
Garcia, N G, et al. "Necrotizing sialometaplasia of palate: a case report." Case reports in pathology vol. 2012 (2012): 679325. doi: https://doi.org/10.1155/2012/679325
Garcia NG, Oliveira DT, Faustino SE, Azevedo AL. Necrotizing sialometaplasia of palate: a case report. Case Rep Pathol. 2012;2012:679325. doi: 10.1155/2012/679325. Epub 2012 Aug 22. PMID: 22957289; PMCID: PMC3432339.
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A Multicentric T-Cell Lymphoma with a Plasmacytoid Morphology in a Dog.

Veterinary sciences

Bally A, Acevedo KF, Pargass I, Gyan L, Rajh S, Suepaul R.
PMID: 29361706
Vet Sci. 2018 Jan 20;5(1). doi: 10.3390/vetsci5010010.

An 8-year-old male (neutered) Labrador with a history of erythematous skin lesions and exercise intolerance for a prolonged period was suddenly found dead. Necropsy findings revealed an infiltrative, focally extensive mass which occupied 25% of the cardiac interventricular septum....

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Bally A, Acevedo KF, Pargass I, et al. A Multicentric T-Cell Lymphoma with a Plasmacytoid Morphology in a Dog. Vet Sci. 2018;5(1)doi: 10.3390/vetsci5010010.
Bally, A., Acevedo, K. F., Pargass, I., Gyan, L., Rajh, S., & Suepaul, R. (2018). A Multicentric T-Cell Lymphoma with a Plasmacytoid Morphology in a Dog. Veterinary sciences, 5(1), . https://doi.org/10.3390/vetsci5010010
Bally, Alissa, et al. "A Multicentric T-Cell Lymphoma with a Plasmacytoid Morphology in a Dog." Veterinary sciences vol. 5,1 (2018). doi: https://doi.org/10.3390/vetsci5010010
Bally A, Acevedo KF, Pargass I, Gyan L, Rajh S, Suepaul R. A Multicentric T-Cell Lymphoma with a Plasmacytoid Morphology in a Dog. Vet Sci. 2018 Jan 20;5(1). doi: 10.3390/vetsci5010010. PMID: 29361706; PMCID: PMC5876584.
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The biosimilars journey: current status and ongoing challenges.

Drugs in context

Kos IA, Azevedo VF, Neto DE, Kowalski SC.
PMID: 30302115
Drugs Context. 2018 Oct 01;7:212543. doi: 10.7573/dic.212543. eCollection 2018.

Biosimilar products are already approved and marketed in several countries. The Food and Drug Administration has approved ten different biosimilars, and the European Medicines Agency has approved 40. Even though this scenario has provided important experience with biosimilar products,...

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Kos IA, Azevedo VF, Neto DE, et al. The biosimilars journey: current status and ongoing challenges. Drugs Context. 2018;7:212543doi: 10.7573/dic.212543.
Kos, I. A., Azevedo, V. F., Neto, D. E., & Kowalski, S. C. (2018). The biosimilars journey: current status and ongoing challenges. Drugs in context, 7212543. https://doi.org/10.7573/dic.212543
Kos, Igor Age, et al. "The biosimilars journey: current status and ongoing challenges." Drugs in context vol. 7 (2018): 212543. doi: https://doi.org/10.7573/dic.212543
Kos IA, Azevedo VF, Neto DE, Kowalski SC. The biosimilars journey: current status and ongoing challenges. Drugs Context. 2018 Oct 01;7:212543. doi: 10.7573/dic.212543. eCollection 2018. PMID: 30302115; PMCID: PMC6172013.
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Whey Protein Isolate-Supplemented Beverage, Fermented by .

Frontiers in microbiology

Cordeiro BF, Oliveira ER, da Silva SH, Savassi BM, Acurcio LB, Lemos L, Alves JL, Carvalho Assis H, Vieira AT, Faria AMC, Ferreira E, Le Loir Y, Jan G, Goulart LR, Azevedo V, Carvalho RDO, do Carmo FLR.
PMID: 30258413
Front Microbiol. 2018 Sep 12;9:2035. doi: 10.3389/fmicb.2018.02035. eCollection 2018.

Mucositis is a clinically important gastrointestinal inflammatory infirmity, generated by antineoplastic drugs cytotoxic effects. The inflammatory process caused by this disease frequently leads to derangements in the alimentary tract and great malaise for the patient. Novel strategies are necessary...

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Cordeiro BF, Oliveira ER, da Silva SH, et al. Whey Protein Isolate-Supplemented Beverage, Fermented by . Front Microbiol. 2018;9:2035doi: 10.3389/fmicb.2018.02035.
Cordeiro, B. F., Oliveira, E. R., da Silva, S. H., Savassi, B. M., Acurcio, L. B., Lemos, L., Alves, J. L., Carvalho Assis, H., Vieira, A. T., Faria, A. M. C., Ferreira, E., Le Loir, Y., Jan, G., Goulart, L. R., Azevedo, V., Carvalho, R. D. O., & do Carmo, F. L. R. (2018). Whey Protein Isolate-Supplemented Beverage, Fermented by . Frontiers in microbiology, 92035. https://doi.org/10.3389/fmicb.2018.02035
Cordeiro, Bárbara F, et al. "Whey Protein Isolate-Supplemented Beverage, Fermented by ." Frontiers in microbiology vol. 9 (2018): 2035. doi: https://doi.org/10.3389/fmicb.2018.02035
Cordeiro BF, Oliveira ER, da Silva SH, Savassi BM, Acurcio LB, Lemos L, Alves JL, Carvalho Assis H, Vieira AT, Faria AMC, Ferreira E, Le Loir Y, Jan G, Goulart LR, Azevedo V, Carvalho RDO, do Carmo FLR. Whey Protein Isolate-Supplemented Beverage, Fermented by . Front Microbiol. 2018 Sep 12;9:2035. doi: 10.3389/fmicb.2018.02035. eCollection 2018. PMID: 30258413; PMCID: PMC6143704.
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Mutation of the Surface Layer Protein SlpB Has Pleiotropic Effects in the Probiotic .

Frontiers in microbiology

do Carmo FLR, Silva WM, Tavares GC, Ibraim IC, Cordeiro BF, Oliveira ER, Rabah H, Cauty C, da Silva SH, Canário Viana MV, Caetano ACB, Dos Santos RG, de Oliveira Carvalho RD, Jardin J, Pereira FL, Folador EL, Le Loir Y, Figueiredo HCP, Jan G, Azevedo V.
PMID: 30174657
Front Microbiol. 2018 Aug 17;9:1807. doi: 10.3389/fmicb.2018.01807. eCollection 2018.

No abstract available.

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do Carmo FLR, Silva WM, Tavares GC, et al. Mutation of the Surface Layer Protein SlpB Has Pleiotropic Effects in the Probiotic . Front Microbiol. 2018;9:1807doi: 10.3389/fmicb.2018.01807.
do Carmo, F. L. R., Silva, W. M., Tavares, G. C., Ibraim, I. C., Cordeiro, B. F., Oliveira, E. R., Rabah, H., Cauty, C., da Silva, S. H., Canário Viana, M. V., Caetano, A. C. B., Dos Santos, R. G., de Oliveira Carvalho, R. D., Jardin, J., Pereira, F. L., Folador, E. L., Le Loir, Y., Figueiredo, H. C. P., Jan, G., & Azevedo, V. (2018). Mutation of the Surface Layer Protein SlpB Has Pleiotropic Effects in the Probiotic . Frontiers in microbiology, 91807. https://doi.org/10.3389/fmicb.2018.01807
do Carmo, Fillipe L R, et al. "Mutation of the Surface Layer Protein SlpB Has Pleiotropic Effects in the Probiotic ." Frontiers in microbiology vol. 9 (2018): 1807. doi: https://doi.org/10.3389/fmicb.2018.01807
do Carmo FLR, Silva WM, Tavares GC, Ibraim IC, Cordeiro BF, Oliveira ER, Rabah H, Cauty C, da Silva SH, Canário Viana MV, Caetano ACB, Dos Santos RG, de Oliveira Carvalho RD, Jardin J, Pereira FL, Folador EL, Le Loir Y, Figueiredo HCP, Jan G, Azevedo V. Mutation of the Surface Layer Protein SlpB Has Pleiotropic Effects in the Probiotic . Front Microbiol. 2018 Aug 17;9:1807. doi: 10.3389/fmicb.2018.01807. eCollection 2018. PMID: 30174657; PMCID: PMC6107788.
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Concomitant myeloproliferative and lymphoproliferative neoplasms, distinct progenitors: A case report and review of the literature.

Molecular and clinical oncology

Mousinho F, Santos PSE, Azevedo AP, Pereira JM, Lemos R, Matos S, Viana JF, Lima F.
PMID: 30155258
Mol Clin Oncol. 2018 Sep;9(3):347-349. doi: 10.3892/mco.2018.1682. Epub 2018 Jul 19.

Patients with a Philadelphia chromosome-negative myeloproliferative neoplasm may develop a lymphoproliferative disorder; however, the clinical and molecular determinants and the chronological onset of the two events remain unknown. We herein report the case of a 64-year-old man with concomitant...

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Mousinho F, Santos PSE, Azevedo AP, et al. Concomitant myeloproliferative and lymphoproliferative neoplasms, distinct progenitors: A case report and review of the literature. Mol Clin Oncol. 2018;9(3):347-349doi: 10.3892/mco.2018.1682.
Mousinho, F., Santos, P. S. E., Azevedo, A. P., Pereira, J. M., Lemos, R., Matos, S., Viana, J. F., & Lima, F. (2018). Concomitant myeloproliferative and lymphoproliferative neoplasms, distinct progenitors: A case report and review of the literature. Molecular and clinical oncology, 9(3), 347-349. https://doi.org/10.3892/mco.2018.1682
Mousinho, Filipa, et al. "Concomitant myeloproliferative and lymphoproliferative neoplasms, distinct progenitors: A case report and review of the literature." Molecular and clinical oncology vol. 9,3 (2018): 347-349. doi: https://doi.org/10.3892/mco.2018.1682
Mousinho F, Santos PSE, Azevedo AP, Pereira JM, Lemos R, Matos S, Viana JF, Lima F. Concomitant myeloproliferative and lymphoproliferative neoplasms, distinct progenitors: A case report and review of the literature. Mol Clin Oncol. 2018 Sep;9(3):347-349. doi: 10.3892/mco.2018.1682. Epub 2018 Jul 19. PMID: 30155258; PMCID: PMC6109675.
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Whole-Genome Sequence of Francisella noatunensis subsp. orientalis Strain FNO01 Isolated from Diseased Nile Tilapia in Brazil.

Genome announcements

Figueiredo HC, Leal CA, Pereira FL, Soares SC, Gonçalves LA, Dorella FA, Carvalho AF, Azevedo VA.
PMID: 26798105
Genome Announc. 2016 Jan 21;4(1). doi: 10.1128/genomeA.01603-15.

This paper describes the complete genome sequence of Francisella noatunensis subsp. orientalis strain FNO01, which was isolated during the first outbreak of francisellosis in cultured Nile tilapia in Brazil. The genome is composed of a circular chromosome with 1,859,830...

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Figueiredo HC, Leal CA, Pereira FL, et al. Whole-Genome Sequence of Francisella noatunensis subsp. orientalis Strain FNO01 Isolated from Diseased Nile Tilapia in Brazil. Genome Announc. 2016;4(1)doi: 10.1128/genomeA.01603-15.
Figueiredo, H. C., Leal, C. A., Pereira, F. L., Soares, S. C., Gonçalves, L. A., Dorella, F. A., Carvalho, A. F., & Azevedo, V. A. (2016). Whole-Genome Sequence of Francisella noatunensis subsp. orientalis Strain FNO01 Isolated from Diseased Nile Tilapia in Brazil. Genome announcements, 4(1), . https://doi.org/10.1128/genomeA.01603-15
Figueiredo, H C P, et al. "Whole-Genome Sequence of Francisella noatunensis subsp. orientalis Strain FNO01 Isolated from Diseased Nile Tilapia in Brazil." Genome announcements vol. 4,1 (2016). doi: https://doi.org/10.1128/genomeA.01603-15
Figueiredo HC, Leal CA, Pereira FL, Soares SC, Gonçalves LA, Dorella FA, Carvalho AF, Azevedo VA. Whole-Genome Sequence of Francisella noatunensis subsp. orientalis Strain FNO01 Isolated from Diseased Nile Tilapia in Brazil. Genome Announc. 2016 Jan 21;4(1). doi: 10.1128/genomeA.01603-15. PMID: 26798105; PMCID: PMC4722272.
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The effect of the infection within the individual host on its propagation in the population.

Infectious Disease Modelling

Azevedo F, Amaku M, Coutinho FAB, Lopez LF, Massad E.
PMID: 30839922
Infect Dis Model. 2018 Nov 20;3:345-361. doi: 10.1016/j.idm.2018.11.002. eCollection 2018.

We consider nested or multiscale models to study the effect of the temporal evolution of the disease within the host in the population dynamics of the disease, for one and two infectious agents. We assumed a coupling between the...

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Azevedo F, Amaku M, Coutinho FAB, et al. The effect of the infection within the individual host on its propagation in the population. Infect Dis Model. 2018;3:345-361doi: 10.1016/j.idm.2018.11.002.
Azevedo, F., Amaku, M., Coutinho, F. A. B., Lopez, L. F., & Massad, E. (2018). The effect of the infection within the individual host on its propagation in the population. Infectious Disease Modelling, 3345-361. https://doi.org/10.1016/j.idm.2018.11.002
Azevedo, Franciane, et al. "The effect of the infection within the individual host on its propagation in the population." Infectious Disease Modelling vol. 3 (2018): 345-361. doi: https://doi.org/10.1016/j.idm.2018.11.002
Azevedo F, Amaku M, Coutinho FAB, Lopez LF, Massad E. The effect of the infection within the individual host on its propagation in the population. Infect Dis Model. 2018 Nov 20;3:345-361. doi: 10.1016/j.idm.2018.11.002. eCollection 2018. PMID: 30839922; PMCID: PMC6326235.
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