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Adjoint method provides phase response functions for delay-induced oscillations.

Physical review letters

Kotani K, Yamaguchi I, Ogawa Y, Jimbo Y, Nakao H, Ermentrout GB.
PMID: 23006090
Phys Rev Lett. 2012 Jul 27;109(4):044101. doi: 10.1103/PhysRevLett.109.044101. Epub 2012 Jul 24.

Limit-cycle oscillations induced by time delay are widely observed in various systems, but a systematic phase-reduction theory for them has yet to be developed. Here we present a practical theoretical framework to calculate the phase response function Z(θ), a...

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Kotani K, Yamaguchi I, Ogawa Y, et al. Adjoint method provides phase response functions for delay-induced oscillations. Phys Rev Lett. 2012;109(4):044101doi: 10.1103/PhysRevLett.109.044101.
Kotani, K., Yamaguchi, I., Ogawa, Y., Jimbo, Y., Nakao, H., & Ermentrout, G. B. (2012). Adjoint method provides phase response functions for delay-induced oscillations. Physical review letters, 109(4), 044101. https://doi.org/10.1103/PhysRevLett.109.044101
Kotani, Kiyoshi, et al. "Adjoint method provides phase response functions for delay-induced oscillations." Physical review letters vol. 109,4 (2012): 044101. doi: https://doi.org/10.1103/PhysRevLett.109.044101
Kotani K, Yamaguchi I, Ogawa Y, Jimbo Y, Nakao H, Ermentrout GB. Adjoint method provides phase response functions for delay-induced oscillations. Phys Rev Lett. 2012 Jul 27;109(4):044101. doi: 10.1103/PhysRevLett.109.044101. Epub 2012 Jul 24. PMID: 23006090.
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Complete Genome Sequence of Pseudomonas aeruginosa Strain 8380, Isolated from the Human Gut.

Genome announcements

Ichise YK, Kosuge T, Uwate M, Nakae T, Maseda H.
PMID: 25999558
Genome Announc. 2015 May 21;3(3). doi: 10.1128/genomeA.00520-15.

Pseudomonas aeruginosa shows multidrug resistance, which is mainly attributable to its expression of xenobiotic efflux pumps. However, it is unclear how silent pumps are expressed in clinical isolates. Here, we sequenced the complete genome of P. aeruginosa strain 8380,...

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Ichise YK, Kosuge T, Uwate M, et al. Complete Genome Sequence of Pseudomonas aeruginosa Strain 8380, Isolated from the Human Gut. Genome Announc. 2015;3(3)doi: 10.1128/genomeA.00520-15.
Ichise, Y. K., Kosuge, T., Uwate, M., Nakae, T., & Maseda, H. (2015). Complete Genome Sequence of Pseudomonas aeruginosa Strain 8380, Isolated from the Human Gut. Genome announcements, 3(3), . https://doi.org/10.1128/genomeA.00520-15
Ichise, Yu-Ki, et al. "Complete Genome Sequence of Pseudomonas aeruginosa Strain 8380, Isolated from the Human Gut." Genome announcements vol. 3,3 (2015). doi: https://doi.org/10.1128/genomeA.00520-15
Ichise YK, Kosuge T, Uwate M, Nakae T, Maseda H. Complete Genome Sequence of Pseudomonas aeruginosa Strain 8380, Isolated from the Human Gut. Genome Announc. 2015 May 21;3(3). doi: 10.1128/genomeA.00520-15. PMID: 25999558; PMCID: PMC4440972.
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Cytomegalovirus Colitis, Cytomegalovirus Hepatitis and Systemic Cytomegalovirus Infection: Common Features and Differences.

Inflammatory intestinal diseases

Nakase H, Herfarth H.
PMID: 27243020
Inflamm Intest Dis. 2016 Apr;1(1):15-23. doi: 10.1159/000443198. Epub 2016 Jan 23.

Cytomegalovirus (CMV) is a ubiquitous human herpes virus, which, after often asymptomatic primary infection, establishes a lifelong latent infection that can periodically be reactivated in both immunocompetent and immunosuppressed carriers. Whereas the diagnostic approach in case of a suspicion...

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Nakase H, Herfarth H. Cytomegalovirus Colitis, Cytomegalovirus Hepatitis and Systemic Cytomegalovirus Infection: Common Features and Differences. Inflamm Intest Dis. 2016;1(1):15-23doi: 10.1159/000443198.
Nakase, H., & Herfarth, H. (2016). Cytomegalovirus Colitis, Cytomegalovirus Hepatitis and Systemic Cytomegalovirus Infection: Common Features and Differences. Inflammatory intestinal diseases, 1(1), 15-23. https://doi.org/10.1159/000443198
Nakase, Hiroshi, and Herfarth, Hans. "Cytomegalovirus Colitis, Cytomegalovirus Hepatitis and Systemic Cytomegalovirus Infection: Common Features and Differences." Inflammatory intestinal diseases vol. 1,1 (2016): 15-23. doi: https://doi.org/10.1159/000443198
Nakase H, Herfarth H. Cytomegalovirus Colitis, Cytomegalovirus Hepatitis and Systemic Cytomegalovirus Infection: Common Features and Differences. Inflamm Intest Dis. 2016 Apr;1(1):15-23. doi: 10.1159/000443198. Epub 2016 Jan 23. PMID: 27243020; PMCID: PMC4883584.
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Targeting cytomegalovirus during ulcerative colitis flare-ups.

Expert review of gastroenterology & hepatology

Nakase H, Onodera K.
PMID: 27211020
Expert Rev Gastroenterol Hepatol. 2016 Oct;10(10):1119-1125. doi: 10.1080/17474124.2016.1192461. Epub 2016 Jun 02.

INTRODUCTION: Human cytomegalovirus (CMV) is a common cause of opportunistic infection leading to severe and fatal disease in immune-compromised individuals. In inflammatory bowel disease patients, particularly those with ulcerative colitis (UC), CMV is often reactivated because these patients are...

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Nakase H, Onodera K. Targeting cytomegalovirus during ulcerative colitis flare-ups. Expert Rev Gastroenterol Hepatol. 2016;10(10):1119-1125doi: 10.1080/17474124.2016.1192461.
Nakase, H., & Onodera, K. (2016). Targeting cytomegalovirus during ulcerative colitis flare-ups. Expert review of gastroenterology & hepatology, 10(10), 1119-1125. https://doi.org/10.1080/17474124.2016.1192461
Nakase, Hiroshi, and Onodera, Kei. "Targeting cytomegalovirus during ulcerative colitis flare-ups." Expert review of gastroenterology & hepatology vol. 10,10 (2016): 1119-1125. doi: https://doi.org/10.1080/17474124.2016.1192461
Nakase H, Onodera K. Targeting cytomegalovirus during ulcerative colitis flare-ups. Expert Rev Gastroenterol Hepatol. 2016 Oct;10(10):1119-1125. doi: 10.1080/17474124.2016.1192461. Epub 2016 Jun 02. PMID: 27211020.
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Aliphatic Hydroxylation by a Bis(µ-oxo)dicopper(III) Complex.

Angewandte Chemie (International ed. in English)

Itoh S, Taki M, Nakao H, Holland PL, Tolman WB, Que Jr, Fukuzumi S.
PMID: 10649424
Angew Chem Int Ed Engl. 2000 Jan;39(2):398-400. doi: 10.1002/(sici)1521-3773(20000117)39:2<398::aid-anie398>3.0.co;2-2.

By using molecular oxygen bis(µ-oxo)dicopper(III) complexes can be produced from Cu(I) complexes with ligand L(X) (L(X)=p-substituted N-ethyl-N-[2-(2-pyridyl)ethyl]-2-phenylethylamine; X=OMe, Me, H, Cl, NO(2)) in which the benzylic position of the ligand is activated and hydroxylated by the Cu(2)O(2) core (see...

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Itoh S, Taki M, Nakao H, et al. Aliphatic Hydroxylation by a Bis(µ-oxo)dicopper(III) Complex. Angew Chem Int Ed Engl. 2000;39(2):398-400doi: 10.1002/(sici)1521-3773(20000117)39:2<398::aid-anie398>3.0.co;2-2.
Itoh, S., Taki, M., Nakao, H., Holland, P. L., Tolman, W. B., Que Jr, & Fukuzumi, S. (2000). Aliphatic Hydroxylation by a Bis(µ-oxo)dicopper(III) Complex. Angewandte Chemie (International ed. in English), 39(2), 398-400. https://doi.org/10.1002/(sici)1521-3773(20000117)39:2<398::aid-anie398>3.0.co;2-2
Itoh, et al. "Aliphatic Hydroxylation by a Bis(µ-oxo)dicopper(III) Complex." Angewandte Chemie (International ed. in English) vol. 39,2 (2000): 398-400. doi: https://doi.org/10.1002/(sici)1521-3773(20000117)39:2<398::aid-anie398>3.0.co;2-2
Itoh S, Taki M, Nakao H, Holland PL, Tolman WB, Que Jr, Fukuzumi S. Aliphatic Hydroxylation by a Bis(µ-oxo)dicopper(III) Complex. Angew Chem Int Ed Engl. 2000 Jan;39(2):398-400. doi: 10.1002/(sici)1521-3773(20000117)39:2<398::aid-anie398>3.0.co;2-2. PMID: 10649424.
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Thermodynamics and effective temperatures in sheared granular matter and emulsions.

The European physical journal. E, Soft matter

Makse H.
PMID: 15010918
Eur Phys J E Soft Matter. 2002 Nov;9(3):265-9. doi: 10.1140/epje/i2002-10089-9.

Recent theories postulate that the non-equilibrium behavior of systems experiencing jamming or structural arrest could be described by equilibrium thermodynamic concepts. If a thermodynamic framework can describe the behavior of systems far from equilibrium, then an effective temperature with...

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Makse H. Thermodynamics and effective temperatures in sheared granular matter and emulsions. Eur Phys J E Soft Matter. 2002;9(3):265-9doi: 10.1140/epje/i2002-10089-9.
Makse, H. (2002). Thermodynamics and effective temperatures in sheared granular matter and emulsions. The European physical journal. E, Soft matter, 9(3), 265-9. https://doi.org/10.1140/epje/i2002-10089-9
Makse, H. "Thermodynamics and effective temperatures in sheared granular matter and emulsions." The European physical journal. E, Soft matter vol. 9,3 (2002): 265-9. doi: https://doi.org/10.1140/epje/i2002-10089-9
Makse H. Thermodynamics and effective temperatures in sheared granular matter and emulsions. Eur Phys J E Soft Matter. 2002 Nov;9(3):265-9. doi: 10.1140/epje/i2002-10089-9. PMID: 15010918.
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[Clinical observations on 460 cases of cesarean section].

Journal of the Japanese Obstetrical & Gynecological Society

YASUI S, KUSUMOTO S, OZAWA S, TAKAHASHI T, SHIMODAIRA K, ITO N, NAKAE M, SHIMANAKA S, SHIMIZU S, UEMATSU O.
PMID: 14002519
J Jpn Obstet Gynecol Soc. 1962 Aug;14:913-20.

No abstract available.

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YASUI S, KUSUMOTO S, OZAWA S, et al. [Clinical observations on 460 cases of cesarean section]. J Jpn Obstet Gynecol Soc. 1962;14:913-20
YASUI, S., KUSUMOTO, S., OZAWA, S., TAKAHASHI, T., SHIMODAIRA, K., ITO, N., NAKAE, M., SHIMANAKA, S., SHIMIZU, S., & UEMATSU, O. (1962). [Clinical observations on 460 cases of cesarean section]. Journal of the Japanese Obstetrical & Gynecological Society, 14913-20.
YASUI, S, et al. "[Clinical observations on 460 cases of cesarean section]." Journal of the Japanese Obstetrical & Gynecological Society vol. 14 (1962): 913-20.
YASUI S, KUSUMOTO S, OZAWA S, TAKAHASHI T, SHIMODAIRA K, ITO N, NAKAE M, SHIMANAKA S, SHIMIZU S, UEMATSU O. [Clinical observations on 460 cases of cesarean section]. J Jpn Obstet Gynecol Soc. 1962 Aug;14:913-20. Japanese. PMID: 14002519.
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Sideband-resolved spectroscopy on the 4 2S(1/2)-3 2D(5/2) transition in single calcium ions by use of fundamental waves of diode lasers.

Optics letters

Toyoda K, Naka H, Kitamura H, Sawamura H, Urabe S.
PMID: 15209268
Opt Lett. 2004 Jun 01;29(11):1270-2. doi: 10.1364/ol.29.001270.

The 4 2S(1/2)-3 2D(5/2) electric quadrupole transition in calcium ions, which is expected to be used in calcium-ion optical frequency standards, is spectroscopically investigated with a laser system that uses only fundamental waves of diode lasers as light sources....

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Toyoda K, Naka H, Kitamura H, et al. Sideband-resolved spectroscopy on the 4 2S(1/2)-3 2D(5/2) transition in single calcium ions by use of fundamental waves of diode lasers. Opt Lett. 2004;29(11):1270-2doi: 10.1364/ol.29.001270.
Toyoda, K., Naka, H., Kitamura, H., Sawamura, H., & Urabe, S. (2004). Sideband-resolved spectroscopy on the 4 2S(1/2)-3 2D(5/2) transition in single calcium ions by use of fundamental waves of diode lasers. Optics letters, 29(11), 1270-2. https://doi.org/10.1364/ol.29.001270
Toyoda, Kenji, et al. "Sideband-resolved spectroscopy on the 4 2S(1/2)-3 2D(5/2) transition in single calcium ions by use of fundamental waves of diode lasers." Optics letters vol. 29,11 (2004): 1270-2. doi: https://doi.org/10.1364/ol.29.001270
Toyoda K, Naka H, Kitamura H, Sawamura H, Urabe S. Sideband-resolved spectroscopy on the 4 2S(1/2)-3 2D(5/2) transition in single calcium ions by use of fundamental waves of diode lasers. Opt Lett. 2004 Jun 01;29(11):1270-2. doi: 10.1364/ol.29.001270. PMID: 15209268.
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Application of the Sakurai-Sugiura projection method to core-excited-state calculation by time-dependent density functional theory.

Journal of computational chemistry

Tsuchimochi T, Kobayashi M, Nakata A, Imamura Y, Nakai H.
PMID: 18432618
J Comput Chem. 2008 Nov 15;29(14):2311-6. doi: 10.1002/jcc.20969.

The Sakurai-Sugiura projection (SS) method was implemented and numerically assessed for diagonalization of the Hamiltonian in time-dependent density functional theory (TDDFT). Since the SS method can be used to specify the range in which the eigenvalues are computed, it...

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Tsuchimochi T, Kobayashi M, Nakata A, et al. Application of the Sakurai-Sugiura projection method to core-excited-state calculation by time-dependent density functional theory. J Comput Chem. 2008;29(14):2311-6doi: 10.1002/jcc.20969.
Tsuchimochi, T., Kobayashi, M., Nakata, A., Imamura, Y., & Nakai, H. (2008). Application of the Sakurai-Sugiura projection method to core-excited-state calculation by time-dependent density functional theory. Journal of computational chemistry, 29(14), 2311-6. https://doi.org/10.1002/jcc.20969
Tsuchimochi, Takashi, et al. "Application of the Sakurai-Sugiura projection method to core-excited-state calculation by time-dependent density functional theory." Journal of computational chemistry vol. 29,14 (2008): 2311-6. doi: https://doi.org/10.1002/jcc.20969
Tsuchimochi T, Kobayashi M, Nakata A, Imamura Y, Nakai H. Application of the Sakurai-Sugiura projection method to core-excited-state calculation by time-dependent density functional theory. J Comput Chem. 2008 Nov 15;29(14):2311-6. doi: 10.1002/jcc.20969. PMID: 18432618.
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Laser soldering with light-intensity patterns reconstructed from computer-generated holograms.

Applied optics

Amako J, Umetsu K, Nakao H.
PMID: 18364853
Appl Opt. 2001 Nov 01;40(31):5643-9. doi: 10.1364/ao.40.005643.

We describe a laser soldering technology with diffractive optics. This technology provides efficient one-step laser illumination for components to be soldered. A phase-only computer-generated hologram set in a variable-focal-length optical configuration generates a diffraction pattern with the dimensions required...

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Amako J, Umetsu K, Nakao H. Laser soldering with light-intensity patterns reconstructed from computer-generated holograms. Appl Opt. 2001;40(31):5643-9doi: 10.1364/ao.40.005643.
Amako, J., Umetsu, K., & Nakao, H. (2001). Laser soldering with light-intensity patterns reconstructed from computer-generated holograms. Applied optics, 40(31), 5643-9. https://doi.org/10.1364/ao.40.005643
Amako, J, et al. "Laser soldering with light-intensity patterns reconstructed from computer-generated holograms." Applied optics vol. 40,31 (2001): 5643-9. doi: https://doi.org/10.1364/ao.40.005643
Amako J, Umetsu K, Nakao H. Laser soldering with light-intensity patterns reconstructed from computer-generated holograms. Appl Opt. 2001 Nov 01;40(31):5643-9. doi: 10.1364/ao.40.005643. PMID: 18364853.
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Diamond beam-position monitor for undulator radiation and tests at the Tristan Super Light Facility.

Journal of synchrotron radiation

Sakae H, Aoyagi H, Oura M, Kimura H, Ohata T, Shiwaku H, Yamamoto S, Sugiyama H, Tanabe K, Kobaski K, Kitamura H.
PMID: 16699231
J Synchrotron Radiat. 1997 Jul 01;4:204-9. doi: 10.1107/S090904959700561X.

A photon beam-position monitor using a diamond foil as a position-sensitive device has been developed for use on insertion-device beamlines of third-generation synchrotron radiation facilities such as SPring-8, and was tested on the undulator beamline of the Tristan Super...

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Sakae H, Aoyagi H, Oura M, et al. Diamond beam-position monitor for undulator radiation and tests at the Tristan Super Light Facility. J Synchrotron Radiat. 1997;4:204-9doi: 10.1107/S090904959700561X.
Sakae, H., Aoyagi, H., Oura, M., Kimura, H., Ohata, T., Shiwaku, H., Yamamoto, S., Sugiyama, H., Tanabe, K., Kobaski, K., & Kitamura, H. (1997). Diamond beam-position monitor for undulator radiation and tests at the Tristan Super Light Facility. Journal of synchrotron radiation, 4204-9. https://doi.org/10.1107/S090904959700561X
Sakae, H, et al. "Diamond beam-position monitor for undulator radiation and tests at the Tristan Super Light Facility." Journal of synchrotron radiation vol. 4 (1997): 204-9. doi: https://doi.org/10.1107/S090904959700561X
Sakae H, Aoyagi H, Oura M, Kimura H, Ohata T, Shiwaku H, Yamamoto S, Sugiyama H, Tanabe K, Kobaski K, Kitamura H. Diamond beam-position monitor for undulator radiation and tests at the Tristan Super Light Facility. J Synchrotron Radiat. 1997 Jul 01;4:204-9. doi: 10.1107/S090904959700561X. PMID: 16699231.
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Time-dependent density functional theory calculations for core-excited states: assessment of standard exchange-correlation functionals and development of a novel hybrid functional.

The Journal of chemical physics

Nakata A, Imamura Y, Otsuka T, Nakai H.
PMID: 16526843
J Chem Phys. 2006 Mar 07;124(9):94105. doi: 10.1063/1.2173987.

A new hybrid functional for accurate descriptions of core and valence excitations, the core-valence Becke's three-parameter exchange (B3)+Lee-Yang-Paar (LYP) correlation functional (CV-B3LYP), is proposed. The construction of the new hybrid functional is based on the assessment that B3LYP performs...

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Nakata A, Imamura Y, Otsuka T, et al. Time-dependent density functional theory calculations for core-excited states: assessment of standard exchange-correlation functionals and development of a novel hybrid functional. J Chem Phys. 2006;124(9):94105doi: 10.1063/1.2173987.
Nakata, A., Imamura, Y., Otsuka, T., & Nakai, H. (2006). Time-dependent density functional theory calculations for core-excited states: assessment of standard exchange-correlation functionals and development of a novel hybrid functional. The Journal of chemical physics, 124(9), 94105. https://doi.org/10.1063/1.2173987
Nakata, Ayako, et al. "Time-dependent density functional theory calculations for core-excited states: assessment of standard exchange-correlation functionals and development of a novel hybrid functional." The Journal of chemical physics vol. 124,9 (2006): 94105. doi: https://doi.org/10.1063/1.2173987
Nakata A, Imamura Y, Otsuka T, Nakai H. Time-dependent density functional theory calculations for core-excited states: assessment of standard exchange-correlation functionals and development of a novel hybrid functional. J Chem Phys. 2006 Mar 07;124(9):94105. doi: 10.1063/1.2173987. PMID: 16526843.
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Showing 25 to 36 of 893 entries