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VacSol: a high throughput in silico pipeline to predict potential therapeutic targets in prokaryotic pathogens using subtractive reverse vaccinology

pipeline programs

Ahmad J, Naz K, Naz A, Rizwan M.
GSID: 5A7vWx-tR_EJ
M Rizwan, A Naz, J Ahmad, K Naz… - BMC …, 2017 - bmcbioinformatics.biomedcentral …

With advances in reverse vaccinology approaches, a progressive improvement has been observed in the prediction of putative vaccine candidates. Reverse vaccinology has …

Formal modeling and analysis of the hexosamine biosynthetic pathway: role of O-linked N-acetylglucosamine transferase in oncogenesis and cancer progression.

PeerJ

Saeed MT, Ahmad J, Kanwal S, Holowatyj AN, Sheikh IA, Zafar Paracha R, Shafi A, Siddiqa A, Bibi Z, Khan M, Ali A.
PMID: 27703839
PeerJ. 2016 Sep 27;4:e2348. doi: 10.7717/peerj.2348. eCollection 2016.

The alteration of glucose metabolism, through increased uptake of glucose and glutamine addiction, is essential to cancer cell growth and invasion. Increased flux of glucose through the Hexosamine Biosynthetic Pathway (HBP) drives increased cellular O-GlcNAcylation (hyper-O-GlcNAcylation) and contributes to...

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Saeed MT, Ahmad J, Kanwal S, et al. Formal modeling and analysis of the hexosamine biosynthetic pathway: role of O-linked N-acetylglucosamine transferase in oncogenesis and cancer progression. PeerJ. 2016;4:e2348doi: 10.7717/peerj.2348.
Saeed, M. T., Ahmad, J., Kanwal, S., Holowatyj, A. N., Sheikh, I. A., Zafar Paracha, R., Shafi, A., Siddiqa, A., Bibi, Z., Khan, M., & Ali, A. (2016). Formal modeling and analysis of the hexosamine biosynthetic pathway: role of O-linked N-acetylglucosamine transferase in oncogenesis and cancer progression. PeerJ, 4e2348. https://doi.org/10.7717/peerj.2348
Saeed, Muhammad Tariq, et al. "Formal modeling and analysis of the hexosamine biosynthetic pathway: role of O-linked N-acetylglucosamine transferase in oncogenesis and cancer progression." PeerJ vol. 4 (2016): e2348. doi: https://doi.org/10.7717/peerj.2348
Saeed MT, Ahmad J, Kanwal S, Holowatyj AN, Sheikh IA, Zafar Paracha R, Shafi A, Siddiqa A, Bibi Z, Khan M, Ali A. Formal modeling and analysis of the hexosamine biosynthetic pathway: role of O-linked N-acetylglucosamine transferase in oncogenesis and cancer progression. PeerJ. 2016 Sep 27;4:e2348. doi: 10.7717/peerj.2348. eCollection 2016. PMID: 27703839; PMCID: PMC5047222.
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Coverage and predictors of routine immunization among 12-23 months old children in disaster affected communities in Pakistan.

International journal of health sciences

Rehman SU, Siddiqui AR, Ahmed J, Fatmi Z, Shah SM, Rahman A, Yousafzai MT.
PMID: 28293154
Int J Health Sci (Qassim). 2017 Jan-Mar;11(1):1-6.

OBJECTIVES: We aimed this study to determine the relationship of various factors related to poor immunization in children in an earthquake affected community.MATERIALS AND METHODS: We conducted this cross-sectional study during 2007-2008 in Muzaffarabad district of Pakistani side of...

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Rehman SU, Siddiqui AR, Ahmed J, et al. Coverage and predictors of routine immunization among 12-23 months old children in disaster affected communities in Pakistan. Int J Health Sci (Qassim). 2017;11(1):1-6
Rehman, S. U., Siddiqui, A. R., Ahmed, J., Fatmi, Z., Shah, S. M., Rahman, A., & Yousafzai, M. T. (2017). Coverage and predictors of routine immunization among 12-23 months old children in disaster affected communities in Pakistan. International journal of health sciences, 11(1), 1-6.
Rehman, Shafiq Ur, et al. "Coverage and predictors of routine immunization among 12-23 months old children in disaster affected communities in Pakistan." International journal of health sciences vol. 11,1 (2017): 1-6.
Rehman SU, Siddiqui AR, Ahmed J, Fatmi Z, Shah SM, Rahman A, Yousafzai MT. Coverage and predictors of routine immunization among 12-23 months old children in disaster affected communities in Pakistan. Int J Health Sci (Qassim). 2017 Jan-Mar;11(1):1-6. PMID: 28293154; PMCID: PMC5327669.
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Spectrum of biliary complications following live donor liver transplantation.

World journal of hepatology

Simoes P, Kesar V, Ahmad J.
PMID: 26207167
World J Hepatol. 2015 Jul 18;7(14):1856-65. doi: 10.4254/wjh.v7.i14.1856.

Liver transplantation is the optimal treatment for many patients with advanced liver disease, including decompensated cirrhosis, hepatocellular carcinoma and acute liver failure. Organ shortage is the main determinant of death on the waiting list and hence living donor liver...

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Simoes P, Kesar V, Ahmad J. Spectrum of biliary complications following live donor liver transplantation. World J Hepatol. 2015;7(14):1856-65doi: 10.4254/wjh.v7.i14.1856.
Simoes, P., Kesar, V., & Ahmad, J. (2015). Spectrum of biliary complications following live donor liver transplantation. World journal of hepatology, 7(14), 1856-65. https://doi.org/10.4254/wjh.v7.i14.1856
Simoes, Priya, et al. "Spectrum of biliary complications following live donor liver transplantation." World journal of hepatology vol. 7,14 (2015): 1856-65. doi: https://doi.org/10.4254/wjh.v7.i14.1856
Simoes P, Kesar V, Ahmad J. Spectrum of biliary complications following live donor liver transplantation. World J Hepatol. 2015 Jul 18;7(14):1856-65. doi: 10.4254/wjh.v7.i14.1856. PMID: 26207167; PMCID: PMC4506943.
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Thymol and carvacrol induce autolysis, stress, growth inhibition and reduce the biofilm formation by Streptococcus mutans.

AMB Express

Khan ST, Khan M, Ahmad J, Wahab R, Abd-Elkader OH, Musarrat J, Alkhathlan HZ, Al-Kedhairy AA.
PMID: 28233286
AMB Express. 2017 Dec;7(1):49. doi: 10.1186/s13568-017-0344-y. Epub 2017 Feb 23.

Organic compounds from plants are an attractive alternative to conventional antimicrobial agents. Therefore, two compounds namely M-1 and M-2 were purified from Origanum vulgare L. and were identified as carvacrol and thymol, respectively. Antimicrobial and antibiofilm activities of these...

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Khan ST, Khan M, Ahmad J, et al. Thymol and carvacrol induce autolysis, stress, growth inhibition and reduce the biofilm formation by Streptococcus mutans. AMB Express. 2017;7(1):49doi: 10.1186/s13568-017-0344-y.
Khan, S. T., Khan, M., Ahmad, J., Wahab, R., Abd-Elkader, O. H., Musarrat, J., Alkhathlan, H. Z., & Al-Kedhairy, A. A. (2017). Thymol and carvacrol induce autolysis, stress, growth inhibition and reduce the biofilm formation by Streptococcus mutans. AMB Express, 7(1), 49. https://doi.org/10.1186/s13568-017-0344-y
Khan, Shams Tabrez, et al. "Thymol and carvacrol induce autolysis, stress, growth inhibition and reduce the biofilm formation by Streptococcus mutans." AMB Express vol. 7,1 (2017): 49. doi: https://doi.org/10.1186/s13568-017-0344-y
Khan ST, Khan M, Ahmad J, Wahab R, Abd-Elkader OH, Musarrat J, Alkhathlan HZ, Al-Kedhairy AA. Thymol and carvacrol induce autolysis, stress, growth inhibition and reduce the biofilm formation by Streptococcus mutans. AMB Express. 2017 Dec;7(1):49. doi: 10.1186/s13568-017-0344-y. Epub 2017 Feb 23. PMID: 28233286; PMCID: PMC5323333.
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Prevalence of hypothyroidism in infertile women and evaluation of response of treatment for hypothyroidism on infertility.

Indian journal of endocrinology and metabolism

Priya DM, Akhtar N, Ahmad J.
PMID: 26180766
Indian J Endocrinol Metab. 2015 Jul-Aug;19(4):504-6. doi: 10.4103/2230-8210.159058.

AIMS AND OBJECTIVES: The aim was to study the prevalence of hypothyroidism in infertile women and evaluation of response of treatment for hypothyroidism on infertility.MATERIALS AND METHODS: A total of 95 infertile women were investigated for thyroid stimulating hormone...

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Priya DM, Akhtar N, Ahmad J. Prevalence of hypothyroidism in infertile women and evaluation of response of treatment for hypothyroidism on infertility. Indian J Endocrinol Metab. 2015;19(4):504-6doi: 10.4103/2230-8210.159058.
Priya, D. M., Akhtar, N., & Ahmad, J. (2015). Prevalence of hypothyroidism in infertile women and evaluation of response of treatment for hypothyroidism on infertility. Indian journal of endocrinology and metabolism, 19(4), 504-6. https://doi.org/10.4103/2230-8210.159058
Priya, D Mohana, et al. "Prevalence of hypothyroidism in infertile women and evaluation of response of treatment for hypothyroidism on infertility." Indian journal of endocrinology and metabolism vol. 19,4 (2015): 504-6. doi: https://doi.org/10.4103/2230-8210.159058
Priya DM, Akhtar N, Ahmad J. Prevalence of hypothyroidism in infertile women and evaluation of response of treatment for hypothyroidism on infertility. Indian J Endocrinol Metab. 2015 Jul-Aug;19(4):504-6. doi: 10.4103/2230-8210.159058. PMID: 26180766; PMCID: PMC4481657.
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Photostability of plasma polymerized γ-terpinene thin films for encapsulation of OPV.

Scientific reports

Bazaka K, Ahmad J, Oelgemöller M, Uddin A, Jacob MV.
PMID: 28358138
Sci Rep. 2017 Mar 30;7:45599. doi: 10.1038/srep45599.

Optically transparent, smooth, defect-free, chemically inert and with good adhesion to a variety of substrates, plasma polymers from plant-derived secondary metabolites have been identified as promising encapsulating materials for organic electronics and photovoltaics. Here, we demonstrate that an encapsulating...

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Bazaka K, Ahmad J, Oelgemöller M, et al. Photostability of plasma polymerized γ-terpinene thin films for encapsulation of OPV. Sci Rep. 2017;7:45599doi: 10.1038/srep45599.
Bazaka, K., Ahmad, J., Oelgemöller, M., Uddin, A., & Jacob, M. V. (2017). Photostability of plasma polymerized γ-terpinene thin films for encapsulation of OPV. Scientific reports, 745599. https://doi.org/10.1038/srep45599
Bazaka, Kateryna, et al. "Photostability of plasma polymerized γ-terpinene thin films for encapsulation of OPV." Scientific reports vol. 7 (2017): 45599. doi: https://doi.org/10.1038/srep45599
Bazaka K, Ahmad J, Oelgemöller M, Uddin A, Jacob MV. Photostability of plasma polymerized γ-terpinene thin films for encapsulation of OPV. Sci Rep. 2017 Mar 30;7:45599. doi: 10.1038/srep45599. PMID: 28358138; PMCID: PMC5372367.
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Migration of an intragastric balloon: A case report.

International journal of surgery case reports

Al Shammari NM, Alshammari AS, Alkandari MA, Abdulsalam AJ.
PMID: 27518432
Int J Surg Case Rep. 2016;27:10-12. doi: 10.1016/j.ijscr.2016.08.006. Epub 2016 Aug 04.

INTRODUCTION: Intragastric balloons are a non-surgical treatment method for obesity.PRESENTATION OF CASE: We report a 28year old Kuwaiti women presented with vomiting and epigastric pain two years following insertion of a intra gastric balloon. The women was diagnosed as...

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Al Shammari NM, Alshammari AS, Alkandari MA, et al. Migration of an intragastric balloon: A case report. Int J Surg Case Rep. 2016;27:10-12doi: 10.1016/j.ijscr.2016.08.006.
Al Shammari, N. M., Alshammari, A. S., Alkandari, M. A., & Abdulsalam, A. J. (2016). Migration of an intragastric balloon: A case report. International journal of surgery case reports, 2710-12. https://doi.org/10.1016/j.ijscr.2016.08.006
Al Shammari, Nael M, et al. "Migration of an intragastric balloon: A case report." International journal of surgery case reports vol. 27 (2016): 10-12. doi: https://doi.org/10.1016/j.ijscr.2016.08.006
Al Shammari NM, Alshammari AS, Alkandari MA, Abdulsalam AJ. Migration of an intragastric balloon: A case report. Int J Surg Case Rep. 2016;27:10-12. doi: 10.1016/j.ijscr.2016.08.006. Epub 2016 Aug 04. PMID: 27518432; PMCID: PMC4983633.
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In situ observation of a hydrogel-glass interface during sliding friction.

Soft matter

Yamamoto T, Kurokawa T, Ahmed J, Kamita G, Yashima S, Furukawa Y, Ota Y, Furukawa H, Gong JP.
PMID: 24962139
Soft Matter. 2014 Aug 14;10(30):5589-96. doi: 10.1039/c4sm00338a.

Direct observation of hydrogel contact with a solid surface in water is indispensable for understanding the friction, lubrication, and adhesion of hydrogels under water. However, this is a difficult task since the refractive index of hydrogels is very close...

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Yamamoto T, Kurokawa T, Ahmed J, et al. In situ observation of a hydrogel-glass interface during sliding friction. Soft Matter. 2014;10(30):5589-96doi: 10.1039/c4sm00338a.
Yamamoto, T., Kurokawa, T., Ahmed, J., Kamita, G., Yashima, S., Furukawa, Y., Ota, Y., Furukawa, H., & Gong, J. P. (2014). In situ observation of a hydrogel-glass interface during sliding friction. Soft matter, 10(30), 5589-96. https://doi.org/10.1039/c4sm00338a
Yamamoto, Tetsurou, et al. "In situ observation of a hydrogel-glass interface during sliding friction." Soft matter vol. 10,30 (2014): 5589-96. doi: https://doi.org/10.1039/c4sm00338a
Yamamoto T, Kurokawa T, Ahmed J, Kamita G, Yashima S, Furukawa Y, Ota Y, Furukawa H, Gong JP. In situ observation of a hydrogel-glass interface during sliding friction. Soft Matter. 2014 Aug 14;10(30):5589-96. doi: 10.1039/c4sm00338a. PMID: 24962139.
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Nanotechnology-based inhalation treatments for lung cancer: state of the art.

Nanotechnology, science and applications

Ahmad J, Akhter S, Rizwanullah M, Amin S, Rahman M, Ahmad MZ, Rizvi MA, Kamal MA, Ahmad FJ.
PMID: 26640374
Nanotechnol Sci Appl. 2015 Nov 19;8:55-66. doi: 10.2147/NSA.S49052. eCollection 2015.

Considering the challenges associated with conventional chemotherapy, targeted and local delivery of chemotherapeutics via nanoparticle (NP) carriers to the lungs is an emerging area of interest. Recent studies and growing clinical application in cancer nanotechnology showed the huge potential...

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Ahmad J, Akhter S, Rizwanullah M, et al. Nanotechnology-based inhalation treatments for lung cancer: state of the art. Nanotechnol Sci Appl. 2015;8:55-66doi: 10.2147/NSA.S49052.
Ahmad, J., Akhter, S., Rizwanullah, M., Amin, S., Rahman, M., Ahmad, M. Z., Rizvi, M. A., Kamal, M. A., & Ahmad, F. J. (2015). Nanotechnology-based inhalation treatments for lung cancer: state of the art. Nanotechnology, science and applications, 855-66. https://doi.org/10.2147/NSA.S49052
Ahmad, Javed, et al. "Nanotechnology-based inhalation treatments for lung cancer: state of the art." Nanotechnology, science and applications vol. 8 (2015): 55-66. doi: https://doi.org/10.2147/NSA.S49052
Ahmad J, Akhter S, Rizwanullah M, Amin S, Rahman M, Ahmad MZ, Rizvi MA, Kamal MA, Ahmad FJ. Nanotechnology-based inhalation treatments for lung cancer: state of the art. Nanotechnol Sci Appl. 2015 Nov 19;8:55-66. doi: 10.2147/NSA.S49052. eCollection 2015. PMID: 26640374; PMCID: PMC4657804.
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Assessment of the First Commercial ELISA Kit for the Diagnosis of Theileria annulata.

Journal of parasitology research

Al-Hosary AA, Ahmed J, Nordengrahn A, Merza M.
PMID: 26640700
J Parasitol Res. 2015;2015:787812. doi: 10.1155/2015/787812. Epub 2015 Nov 10.

The present study assesses the efficacy of SVANOVIR Theileria annulata-Ab, the first commercial ELISA kit for the diagnosis of Theileria annulata infection in cattle based on a recombinant protein known as T. annulata surface protein (TaSp). As a reference...

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Al-Hosary AA, Ahmed J, Nordengrahn A, et al. Assessment of the First Commercial ELISA Kit for the Diagnosis of Theileria annulata. J Parasitol Res. 2015;2015:787812doi: 10.1155/2015/787812.
Al-Hosary, A. A., Ahmed, J., Nordengrahn, A., & Merza, M. (2015). Assessment of the First Commercial ELISA Kit for the Diagnosis of Theileria annulata. Journal of parasitology research, 2015787812. https://doi.org/10.1155/2015/787812
Al-Hosary, Amira A T, et al. "Assessment of the First Commercial ELISA Kit for the Diagnosis of Theileria annulata." Journal of parasitology research vol. 2015 (2015): 787812. doi: https://doi.org/10.1155/2015/787812
Al-Hosary AA, Ahmed J, Nordengrahn A, Merza M. Assessment of the First Commercial ELISA Kit for the Diagnosis of Theileria annulata. J Parasitol Res. 2015;2015:787812. doi: 10.1155/2015/787812. Epub 2015 Nov 10. PMID: 26640700; PMCID: PMC4657071.
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Leprosy.

The Indian medical gazette

Ashmead AS.
PMID: 29002700
Ind Med Gaz. 1896 Oct;31(10):389-390.

No abstract available.

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Ashmead AS. Leprosy. Ind Med Gaz. 1896;31(10):389-390
Ashmead, A. S. (1896). Leprosy. The Indian medical gazette, 31(10), 389-390.
Ashmead, Albert S. "Leprosy." The Indian medical gazette vol. 31,10 (1896): 389-390.
Ashmead AS. Leprosy. Ind Med Gaz. 1896 Oct;31(10):389-390. PMID: 29002700; PMCID: PMC5146243.
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Showing 1 to 12 of 561 entries