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The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest.

Biotechnology for biofuels

Kunze G, Gaillardin C, Czernicka M, Durrens P, Martin T, Böer E, Gabaldón T, Cruz JA, Talla E, Marck C, Goffeau A, Barbe V, Baret P, Baronian K, Beier S, Bleykasten C, Bode R, Casaregola S, Despons L, Fairhead C, Giersberg M, Gierski PP, Hähnel U, Hartmann A, Jankowska D, Jubin C, Jung P, Lafontaine I, Leh-Louis V, Lemaire M, Marcet-Houben M, Mascher M, Morel G, Richard GF, Riechen J, Sacerdot C, Sarkar A, Savel G, Schacherer J, Sherman DJ, Stein N, Straub ML, Thierry A, Trautwein-Schult A, Vacherie B, Westhof E, Worch S, Dujon B, Souciet JL, Wincker P, Scholz U, Neuvéglise C.
PMID: 24834124
Biotechnol Biofuels. 2014 Apr 24;7:66. doi: 10.1186/1754-6834-7-66. eCollection 2014.

BACKGROUND: The industrially important yeast Blastobotrys (Arxula) adeninivorans is an asexual hemiascomycete phylogenetically very distant from Saccharomyces cerevisiae. Its unusual metabolic flexibility allows it to use a wide range of carbon and nitrogen sources, while being thermotolerant, xerotolerant and...

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Kunze G, Gaillardin C, Czernicka M, et al. The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest. Biotechnol Biofuels. 2014;7:66doi: 10.1186/1754-6834-7-66.
Kunze, G., Gaillardin, C., Czernicka, M., Durrens, P., Martin, T., Böer, E., Gabaldón, T., Cruz, J. A., Talla, E., Marck, C., Goffeau, A., Barbe, V., Baret, P., Baronian, K., Beier, S., Bleykasten, C., Bode, R., Casaregola, S., Despons, L., Fairhead, C., Giersberg, M., Gierski, P. P., Hähnel, U., Hartmann, A., Jankowska, D., Jubin, C., Jung, P., Lafontaine, I., Leh-Louis, V., Lemaire, M., Marcet-Houben, M., Mascher, M., Morel, G., Richard, G. F., Riechen, J., Sacerdot, C., Sarkar, A., Savel, G., Schacherer, J., Sherman, D. J., Stein, N., Straub, M. L., Thierry, A., Trautwein-Schult, A., Vacherie, B., Westhof, E., Worch, S., Dujon, B., Souciet, J. L., Wincker, P., Scholz, U., & Neuvéglise, C. (2014). The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest. Biotechnology for biofuels, 766. https://doi.org/10.1186/1754-6834-7-66
Kunze, Gotthard, et al. "The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest." Biotechnology for biofuels vol. 7 (2014): 66. doi: https://doi.org/10.1186/1754-6834-7-66
Kunze G, Gaillardin C, Czernicka M, Durrens P, Martin T, Böer E, Gabaldón T, Cruz JA, Talla E, Marck C, Goffeau A, Barbe V, Baret P, Baronian K, Beier S, Bleykasten C, Bode R, Casaregola S, Despons L, Fairhead C, Giersberg M, Gierski PP, Hähnel U, Hartmann A, Jankowska D, Jubin C, Jung P, Lafontaine I, Leh-Louis V, Lemaire M, Marcet-Houben M, Mascher M, Morel G, Richard GF, Riechen J, Sacerdot C, Sarkar A, Savel G, Schacherer J, Sherman DJ, Stein N, Straub ML, Thierry A, Trautwein-Schult A, Vacherie B, Westhof E, Worch S, Dujon B, Souciet JL, Wincker P, Scholz U, Neuvéglise C. The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest. Biotechnol Biofuels. 2014 Apr 24;7:66. doi: 10.1186/1754-6834-7-66. eCollection 2014. PMID: 24834124; PMCID: PMC4022394.
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Panniculitis caused by Mycobacterium monacense mimicking erythema induratum: a case in Ecuador.

New microbes and new infections

Romero JJ, Herrera P, Cartelle M, Barba P, Tello S, Zurita J.
PMID: 26933504
New Microbes New Infect. 2016 Jan 22;10:112-5. doi: 10.1016/j.nmni.2016.01.006. eCollection 2016 Mar.

We report the first case of recently characterized species M. monacense associated with chronic nodular vasculitis, infecting a young woman. This case represents the first isolation of M. monacense from Ecuador. The isolate was identified by conventional and molecular...

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Romero JJ, Herrera P, Cartelle M, et al. Panniculitis caused by Mycobacterium monacense mimicking erythema induratum: a case in Ecuador. New Microbes New Infect. 2016;10:112-5doi: 10.1016/j.nmni.2016.01.006.
Romero, J. J., Herrera, P., Cartelle, M., Barba, P., Tello, S., & Zurita, J. (2016). Panniculitis caused by Mycobacterium monacense mimicking erythema induratum: a case in Ecuador. New microbes and new infections, 10112-5. https://doi.org/10.1016/j.nmni.2016.01.006
Romero, J J, et al. "Panniculitis caused by Mycobacterium monacense mimicking erythema induratum: a case in Ecuador." New microbes and new infections vol. 10 (2016): 112-5. doi: https://doi.org/10.1016/j.nmni.2016.01.006
Romero JJ, Herrera P, Cartelle M, Barba P, Tello S, Zurita J. Panniculitis caused by Mycobacterium monacense mimicking erythema induratum: a case in Ecuador. New Microbes New Infect. 2016 Jan 22;10:112-5. doi: 10.1016/j.nmni.2016.01.006. eCollection 2016 Mar. PMID: 26933504; PMCID: PMC4765770.
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RE: Cancer incidence and mortality in China, 2013 by Chen et al.

Cancer letters

Yu XQ, Baade P.
PMID: 28455247
Cancer Lett. 2017 Aug 10;401:72-73. doi: 10.1016/j.canlet.2017.04.018. Epub 2017 Apr 25.

No abstract available.

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Yu XQ, Baade P. RE: Cancer incidence and mortality in China, 2013 by Chen et al. Cancer Lett. 2017;401:72-73doi: 10.1016/j.canlet.2017.04.018.
Yu, X. Q., & Baade, P. (2017). RE: Cancer incidence and mortality in China, 2013 by Chen et al. Cancer letters, 40172-73. https://doi.org/10.1016/j.canlet.2017.04.018
Yu, Xue Qin, and Baade, Peter. "RE: Cancer incidence and mortality in China, 2013 by Chen et al." Cancer letters vol. 401 (2017): 72-73. doi: https://doi.org/10.1016/j.canlet.2017.04.018
Yu XQ, Baade P. RE: Cancer incidence and mortality in China, 2013 by Chen et al. Cancer Lett. 2017 Aug 10;401:72-73. doi: 10.1016/j.canlet.2017.04.018. Epub 2017 Apr 25. PMID: 28455247.
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High-throughput phenotyping of lateral expansion and regrowth of spaced Lolium perenne plants using on-field image analysis.

Plant methods

Lootens P, Ruttink T, Rohde A, Combes D, Barre P, Roldán-Ruiz I.
PMID: 27293473
Plant Methods. 2016 Jun 10;12:32. doi: 10.1186/s13007-016-0132-8. eCollection 2016.

BACKGROUND: Genetic studies and breeding of agricultural crops frequently involve phenotypic characterization of large collections of genotypes grown in field conditions. These evaluations are typically based on visual observations and manual (destructive) measurements. Robust image capture and analysis procedures...

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Lootens P, Ruttink T, Rohde A, et al. High-throughput phenotyping of lateral expansion and regrowth of spaced Lolium perenne plants using on-field image analysis. Plant Methods. 2016;12:32doi: 10.1186/s13007-016-0132-8.
Lootens, P., Ruttink, T., Rohde, A., Combes, D., Barre, P., & Roldán-Ruiz, I. (2016). High-throughput phenotyping of lateral expansion and regrowth of spaced Lolium perenne plants using on-field image analysis. Plant methods, 1232. https://doi.org/10.1186/s13007-016-0132-8
Lootens, Peter, et al. "High-throughput phenotyping of lateral expansion and regrowth of spaced Lolium perenne plants using on-field image analysis." Plant methods vol. 12 (2016): 32. doi: https://doi.org/10.1186/s13007-016-0132-8
Lootens P, Ruttink T, Rohde A, Combes D, Barre P, Roldán-Ruiz I. High-throughput phenotyping of lateral expansion and regrowth of spaced Lolium perenne plants using on-field image analysis. Plant Methods. 2016 Jun 10;12:32. doi: 10.1186/s13007-016-0132-8. eCollection 2016. PMID: 27293473; PMCID: PMC4902915.
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StreAM-[Formula: see text]: algorithms for analyzing coarse grained RNA dynamics based on Markov models of connectivity-graphs.

Algorithms for molecular biology : AMB

Jager S, Schiller B, Babel P, Blumenroth M, Strufe T, Hamacher K.
PMID: 28572834
Algorithms Mol Biol. 2017 May 30;12:15. doi: 10.1186/s13015-017-0105-0. eCollection 2017.

BACKGROUND: In this work, we present a new coarse grained representation of RNA dynamics. It is based on adjacency matrices and their interactions patterns obtained from molecular dynamics simulations. RNA molecules are well-suited for this representation due to their...

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Jager S, Schiller B, Babel P, et al. StreAM-[Formula: see text]: algorithms for analyzing coarse grained RNA dynamics based on Markov models of connectivity-graphs. Algorithms Mol Biol. 2017;12:15doi: 10.1186/s13015-017-0105-0.
Jager, S., Schiller, B., Babel, P., Blumenroth, M., Strufe, T., & Hamacher, K. (2017). StreAM-[Formula: see text]: algorithms for analyzing coarse grained RNA dynamics based on Markov models of connectivity-graphs. Algorithms for molecular biology : AMB, 1215. https://doi.org/10.1186/s13015-017-0105-0
Jager, Sven, et al. "StreAM-[Formula: see text]: algorithms for analyzing coarse grained RNA dynamics based on Markov models of connectivity-graphs." Algorithms for molecular biology : AMB vol. 12 (2017): 15. doi: https://doi.org/10.1186/s13015-017-0105-0
Jager S, Schiller B, Babel P, Blumenroth M, Strufe T, Hamacher K. StreAM-[Formula: see text]: algorithms for analyzing coarse grained RNA dynamics based on Markov models of connectivity-graphs. Algorithms Mol Biol. 2017 May 30;12:15. doi: 10.1186/s13015-017-0105-0. eCollection 2017. PMID: 28572834; PMCID: PMC5450175.
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Recurrent DNA virus domestication leading to different parasite virulence strategies.

Science advances

Pichon A, Bézier A, Urbach S, Aury JM, Jouan V, Ravallec M, Guy J, Cousserans F, Thézé J, Gauthier J, Demettre E, Schmieder S, Wurmser F, Sibut V, Poirié M, Colinet D, da Silva C, Couloux A, Barbe V, Drezen JM, Volkoff AN.
PMID: 26702449
Sci Adv. 2015 Nov 27;1(10):e1501150. doi: 10.1126/sciadv.1501150. eCollection 2015 Nov.

Relics of ancient infections are abundant in eukaryote genomes, but little is known about how they evolve when they confer a functional benefit on their host. We show here, for the first time, that the virus-like particles shown to...

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Pichon A, Bézier A, Urbach S, et al. Recurrent DNA virus domestication leading to different parasite virulence strategies. Sci Adv. 2015;1(10):e1501150doi: 10.1126/sciadv.1501150.
Pichon, A., Bézier, A., Urbach, S., Aury, J. M., Jouan, V., Ravallec, M., Guy, J., Cousserans, F., Thézé, J., Gauthier, J., Demettre, E., Schmieder, S., Wurmser, F., Sibut, V., Poirié, M., Colinet, D., da Silva, C., Couloux, A., Barbe, V., Drezen, J. M., & Volkoff, A. N. (2015). Recurrent DNA virus domestication leading to different parasite virulence strategies. Science advances, 1(10), e1501150. https://doi.org/10.1126/sciadv.1501150
Pichon, Apolline, et al. "Recurrent DNA virus domestication leading to different parasite virulence strategies." Science advances vol. 1,10 (2015): e1501150. doi: https://doi.org/10.1126/sciadv.1501150
Pichon A, Bézier A, Urbach S, Aury JM, Jouan V, Ravallec M, Guy J, Cousserans F, Thézé J, Gauthier J, Demettre E, Schmieder S, Wurmser F, Sibut V, Poirié M, Colinet D, da Silva C, Couloux A, Barbe V, Drezen JM, Volkoff AN. Recurrent DNA virus domestication leading to different parasite virulence strategies. Sci Adv. 2015 Nov 27;1(10):e1501150. doi: 10.1126/sciadv.1501150. eCollection 2015 Nov. PMID: 26702449; PMCID: PMC4681339.
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Thiomonas sp. CB2 is able to degrade urea and promote toxic metal precipitation in acid mine drainage waters supplemented with urea.

Frontiers in microbiology

Farasin J, Andres J, Casiot C, Barbe V, Faerber J, Halter D, Heintz D, Koechler S, Lièvremont D, Lugan R, Marchal M, Plewniak F, Seby F, Bertin PN, Arsène-Ploetze F.
PMID: 26441922
Front Microbiol. 2015 Sep 28;6:993. doi: 10.3389/fmicb.2015.00993. eCollection 2015.

The acid mine drainage (AMD) in Carnoulès (France) is characterized by the presence of toxic metals such as arsenic. Several bacterial strains belonging to the Thiomonas genus, which were isolated from this AMD, are able to withstand these conditions....

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Farasin J, Andres J, Casiot C, et al. Thiomonas sp. CB2 is able to degrade urea and promote toxic metal precipitation in acid mine drainage waters supplemented with urea. Front Microbiol. 2015;6:993doi: 10.3389/fmicb.2015.00993.
Farasin, J., Andres, J., Casiot, C., Barbe, V., Faerber, J., Halter, D., Heintz, D., Koechler, S., Lièvremont, D., Lugan, R., Marchal, M., Plewniak, F., Seby, F., Bertin, P. N., & Arsène-Ploetze, F. (2015). Thiomonas sp. CB2 is able to degrade urea and promote toxic metal precipitation in acid mine drainage waters supplemented with urea. Frontiers in microbiology, 6993. https://doi.org/10.3389/fmicb.2015.00993
Farasin, Julien, et al. "Thiomonas sp. CB2 is able to degrade urea and promote toxic metal precipitation in acid mine drainage waters supplemented with urea." Frontiers in microbiology vol. 6 (2015): 993. doi: https://doi.org/10.3389/fmicb.2015.00993
Farasin J, Andres J, Casiot C, Barbe V, Faerber J, Halter D, Heintz D, Koechler S, Lièvremont D, Lugan R, Marchal M, Plewniak F, Seby F, Bertin PN, Arsène-Ploetze F. Thiomonas sp. CB2 is able to degrade urea and promote toxic metal precipitation in acid mine drainage waters supplemented with urea. Front Microbiol. 2015 Sep 28;6:993. doi: 10.3389/fmicb.2015.00993. eCollection 2015. PMID: 26441922; PMCID: PMC4585258.
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Formation of paramagnetic metallacyclobutadienes by reaction of diaminoacetylenes with molybdenum alkylidyne complexes.

Dalton transactions (Cambridge, England : 2003)

Àrias Ò, Brandhorst K, Baabe D, Freytag M, Jones PG, Tamm M.
PMID: 28332672
Dalton Trans. 2017 Apr 05;46(14):4737-4748. doi: 10.1039/c7dt00305f.

The reactions of the molybdenum alkylidyne complex [MesC[triple bond, length as m-dash]Mo{OCMe(CF

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Àrias Ò, Brandhorst K, Baabe D, et al. Formation of paramagnetic metallacyclobutadienes by reaction of diaminoacetylenes with molybdenum alkylidyne complexes. Dalton Trans. 2017;46(14):4737-4748doi: 10.1039/c7dt00305f.
Àrias, �. �., Brandhorst, K., Baabe, D., Freytag, M., Jones, P. G., & Tamm, M. (2017). Formation of paramagnetic metallacyclobutadienes by reaction of diaminoacetylenes with molybdenum alkylidyne complexes. Dalton transactions (Cambridge, England : 2003), 46(14), 4737-4748. https://doi.org/10.1039/c7dt00305f
Àrias, Òscar, et al. "Formation of paramagnetic metallacyclobutadienes by reaction of diaminoacetylenes with molybdenum alkylidyne complexes." Dalton transactions (Cambridge, England : 2003) vol. 46,14 (2017): 4737-4748. doi: https://doi.org/10.1039/c7dt00305f
Àrias Ò, Brandhorst K, Baabe D, Freytag M, Jones PG, Tamm M. Formation of paramagnetic metallacyclobutadienes by reaction of diaminoacetylenes with molybdenum alkylidyne complexes. Dalton Trans. 2017 Apr 05;46(14):4737-4748. doi: 10.1039/c7dt00305f. PMID: 28332672.
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Combining Drought Survival via Summer Dormancy and Annual Biomass Productivity in Dactylis glomerata L.

Frontiers in plant science

Kallida R, Zhouri L, Volaire F, Guerin A, Julier B, Shaimi N, Fakiri M, Barre P.
PMID: 26904054
Front Plant Sci. 2016 Feb 09;7:82. doi: 10.3389/fpls.2016.00082. eCollection 2016.

Under Mediterranean climates, the best strategy to produce rain-fed fodder crops is to develop perennial drought resistant varieties. Summer dormancy present in native germplasm has been shown to confer a high level of survival under severe drought. Nevertheless it...

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Kallida R, Zhouri L, Volaire F, et al. Combining Drought Survival via Summer Dormancy and Annual Biomass Productivity in Dactylis glomerata L. Front Plant Sci. 2016;7:82doi: 10.3389/fpls.2016.00082.
Kallida, R., Zhouri, L., Volaire, F., Guerin, A., Julier, B., Shaimi, N., Fakiri, M., & Barre, P. (2016). Combining Drought Survival via Summer Dormancy and Annual Biomass Productivity in Dactylis glomerata L. Frontiers in plant science, 782. https://doi.org/10.3389/fpls.2016.00082
Kallida, Rajae, et al. "Combining Drought Survival via Summer Dormancy and Annual Biomass Productivity in Dactylis glomerata L." Frontiers in plant science vol. 7 (2016): 82. doi: https://doi.org/10.3389/fpls.2016.00082
Kallida R, Zhouri L, Volaire F, Guerin A, Julier B, Shaimi N, Fakiri M, Barre P. Combining Drought Survival via Summer Dormancy and Annual Biomass Productivity in Dactylis glomerata L. Front Plant Sci. 2016 Feb 09;7:82. doi: 10.3389/fpls.2016.00082. eCollection 2016. PMID: 26904054; PMCID: PMC4746912.
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Analysis of the 2nu1 + nu2 + 2nu3 Band of Ozone.

Journal of molecular spectroscopy

Barbe A, Mikhailenko S, Plateaux JJ, Tyuterev VG, Visinoni R, Giorgianni S, Baldacci A, Pedrali M, Ghersetti S.
PMID: 9398547
J Mol Spectrosc. 1997 Apr 01;182(2):333-41. doi: 10.1006/jmsp.1996.7208.

The 2nu1 + nu2 + 2nu3 band of ozone, occurring in the 4780 cm-1 region, has been observed for the first time, using a Fourier transform spectrometer, at 0.008 cm-1 resolution and using a large path length pressure product....

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Barbe A, Mikhailenko S, Plateaux JJ, et al. Analysis of the 2nu1 + nu2 + 2nu3 Band of Ozone. J Mol Spectrosc. 1997;182(2):333-41doi: 10.1006/jmsp.1996.7208.
Barbe, A., Mikhailenko, S., Plateaux, J. J., Tyuterev, V. G., Visinoni, R., Giorgianni, S., Baldacci, A., Pedrali, M., & Ghersetti, S. (1997). Analysis of the 2nu1 + nu2 + 2nu3 Band of Ozone. Journal of molecular spectroscopy, 182(2), 333-41. https://doi.org/10.1006/jmsp.1996.7208
Barbe, et al. "Analysis of the 2nu1 + nu2 + 2nu3 Band of Ozone." Journal of molecular spectroscopy vol. 182,2 (1997): 333-41. doi: https://doi.org/10.1006/jmsp.1996.7208
Barbe A, Mikhailenko S, Plateaux JJ, Tyuterev VG, Visinoni R, Giorgianni S, Baldacci A, Pedrali M, Ghersetti S. Analysis of the 2nu1 + nu2 + 2nu3 Band of Ozone. J Mol Spectrosc. 1997 Apr 01;182(2):333-41. doi: 10.1006/jmsp.1996.7208. PMID: 9398547.
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Cyclopia: a radiological and anatomical craniofacial post mortem study.

Journal of maxillofacial surgery

Cannistr C, Barbet P, Parisi P, Iannetti G.
PMID: 11403551
J Maxillofac Surg. 2001 Jun;29(3):150-155. doi: 10.1054/jcms.2001.0202.

Cyclopia is a rare foetal malformation characterized by a single palpebral fissure and a proboscis associated with severe brain malformation. Approximately 1.05 in 100 000 births including stillbirths are identified as cyclopian. Cyclopia is not compatible with life. The...

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Cannistr C, Barbet P, Parisi P, et al. Cyclopia: a radiological and anatomical craniofacial post mortem study. J Maxillofac Surg. 2001;29(3):150-155doi: 10.1054/jcms.2001.0202.
Cannistr, C., Barbet, P., Parisi, P., & Iannetti, G. (2001). Cyclopia: a radiological and anatomical craniofacial post mortem study. Journal of maxillofacial surgery, 29(3), 150-155. https://doi.org/10.1054/jcms.2001.0202
Cannistr, Claudio, et al. "Cyclopia: a radiological and anatomical craniofacial post mortem study." Journal of maxillofacial surgery vol. 29,3 (2001): 150-155. doi: https://doi.org/10.1054/jcms.2001.0202
Cannistr C, Barbet P, Parisi P, Iannetti G. Cyclopia: a radiological and anatomical craniofacial post mortem study. J Maxillofac Surg. 2001 Jun;29(3):150-155. doi: 10.1054/jcms.2001.0202. PMID: 11403551.
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Scattering of electromagnetic waves by arbitrarily shaped dielectric bodies.

Applied optics

Barber P, Yeh C.
PMID: 20155124
Appl Opt. 1975 Dec 01;14(12):2864-72. doi: 10.1364/AO.14.002864.

The differential scattering characteristics of closed three-dimensional dielectric objects are theoretically investigated. The scattering problem is solved in a spherical basis by the Extended Boundary Condition Method (EBCM) which results in a system of linear equations for the expansion...

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Barber P, Yeh C. Scattering of electromagnetic waves by arbitrarily shaped dielectric bodies. Appl Opt. 1975;14(12):2864-72doi: 10.1364/AO.14.002864.
Barber, P., & Yeh, C. (1975). Scattering of electromagnetic waves by arbitrarily shaped dielectric bodies. Applied optics, 14(12), 2864-72. https://doi.org/10.1364/AO.14.002864
Barber, P, and Yeh, C. "Scattering of electromagnetic waves by arbitrarily shaped dielectric bodies." Applied optics vol. 14,12 (1975): 2864-72. doi: https://doi.org/10.1364/AO.14.002864
Barber P, Yeh C. Scattering of electromagnetic waves by arbitrarily shaped dielectric bodies. Appl Opt. 1975 Dec 01;14(12):2864-72. doi: 10.1364/AO.14.002864. PMID: 20155124.
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