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Machine learning for data-driven discovery in solid Earth geoscience

Geoscience Opportunities for Leadership in Diversity AND Program Evaluation

Bergen KJ, Beroza GC, de MV, Johnson PA.
GSID: oKtahfl7JWMJ
KJ Bergen, PA Johnson, MV de Hoop, GC Beroza - Science, 2019 - science.org

Understanding the behavior of Earth through the diverse fields of the solid Earth geosciences is an increasingly important task. It is made challenging by the complex, interacting, and multiscale processes needed to understand Earth's behavior and by the inaccessibility...

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Bergen, K. J., Johnson, P. A., de Hoop, M. V., & Beroza, G. C. (2019). Machine learning for data-driven discovery in solid Earth geoscience. Science, 363(6433), eaau0323.
Bergen, Karianne J., et al. "Machine learning for data-driven discovery in solid Earth geoscience." Science 363.6433 (2019): eaau0323.
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[Development and purpose of professional associations].

Die Sonde

Berden HJ.
PMID: 5250998
Sonde. 1968 Mar;8(1):8-9.

No abstract available.

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Berden HJ. Entwicklung und Sinn berufsständischer Verbände. [Development and purpose of professional associations]. Sonde. 1968;8(1):8-9
Berden, H. J. (1968). Entwicklung und Sinn berufsständischer Verbände. [Development and purpose of professional associations]. Die Sonde, 8(1), 8-9.
Berden, H J. "Entwicklung und Sinn berufsständischer Verbände." [Development and purpose of professional associations]. Die Sonde vol. 8,1 (1968): 8-9.
Berden HJ. Entwicklung und Sinn berufsständischer Verbände. [Development and purpose of professional associations]. Sonde. 1968 Mar;8(1):8-9. German. PMID: 5250998.
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A Genome-wide Association Study of Lung Cancer Identifies a Region of Chromosome 5p15 Associated with Risk for Adenocarcinoma.

American journal of human genetics

Landi MT, Chatterjee N, Yu K, Goldin LR, Goldstein AM, Rotunno M, Mirabello L, Jacobs K, Wheeler W, Yeager M, Bergen AW, Li Q, Consonni D, Pesatori AC, Wacholder S, Thun M, Diver R, Oken M, Virtamo J, Albanes D, Wang Z, Burdette L, Doheny KF, Pugh EW, Laurie C, Brennan P, Hung R, Gaborieau V, McKay JD, Lathrop M, McLaughlin J, Wang Y, Tsao MS, Spitz MR, Wang Y, Krokan H, Vatten L, Skorpen F, Arnesen E, Benhamou S, Bouchard C, Metspalu A, Vooder T, Nelis M, Välk K, Field JK, Chen C, Goodman G, Sulem P, Thorleifsson G, Rafnar T, Eisen T, Sauter W, Rosenberger A, Bickeböller H, Risch A, Chang-Claude J, Wichmann HE, Stefansson K, Houlston R, Amos CI, Fraumeni JF, Savage SA, Bertazzi PA, Tucker MA, Chanock S, Caporaso NE.
PMID: 28472664
Am J Hum Genet. 2011 Jun 10;88(6):861. doi: 10.1016/j.ajhg.2011.05.003. Epub 2011 Jun 10.

No abstract available.

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Landi MT, Chatterjee N, Yu K, et al. A Genome-wide Association Study of Lung Cancer Identifies a Region of Chromosome 5p15 Associated with Risk for Adenocarcinoma. Am J Hum Genet. 2011;88(6):861doi: 10.1016/j.ajhg.2011.05.003.
Landi, M. T., Chatterjee, N., Yu, K., Goldin, L. R., Goldstein, A. M., Rotunno, M., Mirabello, L., Jacobs, K., Wheeler, W., Yeager, M., Bergen, A. W., Li, Q., Consonni, D., Pesatori, A. C., Wacholder, S., Thun, M., Diver, R., Oken, M., Virtamo, J., Albanes, D., Wang, Z., Burdette, L., Doheny, K. F., Pugh, E. W., Laurie, C., Brennan, P., Hung, R., Gaborieau, V., McKay, J. D., Lathrop, M., McLaughlin, J., Wang, Y., Tsao, M. S., Spitz, M. R., Wang, Y., Krokan, H., Vatten, L., Skorpen, F., Arnesen, E., Benhamou, S., Bouchard, C., Metspalu, A., Vooder, T., Nelis, M., Välk, K., Field, J. K., Chen, C., Goodman, G., Sulem, P., Thorleifsson, G., Rafnar, T., Eisen, T., Sauter, W., Rosenberger, A., Bickeböller, H., Risch, A., Chang-Claude, J., Wichmann, H. E., Stefansson, K., Houlston, R., Amos, C. I., Fraumeni, J. F., Savage, S. A., Bertazzi, P. A., Tucker, M. A., Chanock, S., & Caporaso, N. E. (2011). A Genome-wide Association Study of Lung Cancer Identifies a Region of Chromosome 5p15 Associated with Risk for Adenocarcinoma. American journal of human genetics, 88(6), 861. https://doi.org/10.1016/j.ajhg.2011.05.003
Landi, Maria Teresa, et al. "A Genome-wide Association Study of Lung Cancer Identifies a Region of Chromosome 5p15 Associated with Risk for Adenocarcinoma." American journal of human genetics vol. 88,6 (2011): 861. doi: https://doi.org/10.1016/j.ajhg.2011.05.003
Landi MT, Chatterjee N, Yu K, Goldin LR, Goldstein AM, Rotunno M, Mirabello L, Jacobs K, Wheeler W, Yeager M, Bergen AW, Li Q, Consonni D, Pesatori AC, Wacholder S, Thun M, Diver R, Oken M, Virtamo J, Albanes D, Wang Z, Burdette L, Doheny KF, Pugh EW, Laurie C, Brennan P, Hung R, Gaborieau V, McKay JD, Lathrop M, McLaughlin J, Wang Y, Tsao MS, Spitz MR, Wang Y, Krokan H, Vatten L, Skorpen F, Arnesen E, Benhamou S, Bouchard C, Metspalu A, Vooder T, Nelis M, Välk K, Field JK, Chen C, Goodman G, Sulem P, Thorleifsson G, Rafnar T, Eisen T, Sauter W, Rosenberger A, Bickeböller H, Risch A, Chang-Claude J, Wichmann HE, Stefansson K, Houlston R, Amos CI, Fraumeni JF, Savage SA, Bertazzi PA, Tucker MA, Chanock S, Caporaso NE. A Genome-wide Association Study of Lung Cancer Identifies a Region of Chromosome 5p15 Associated with Risk for Adenocarcinoma. Am J Hum Genet. 2011 Jun 10;88(6):861. doi: 10.1016/j.ajhg.2011.05.003. Epub 2011 Jun 10. PMID: 28472664; PMCID: PMC3113243.
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Myostatin as a mediator of sarcopenia versus homeostatic regulator of muscle mass: insights using a new mass spectrometry-based assay.

Skeletal muscle

Bergen HR, Farr JN, Vanderboom PM, Atkinson EJ, White TA, Singh RJ, Khosla S, LeBrasseur NK.
PMID: 26180626
Skelet Muscle. 2015 Jul 15;5:21. doi: 10.1186/s13395-015-0047-5. eCollection 2015.

BACKGROUND: Myostatin is a protein synthesized and secreted by skeletal muscle that negatively regulates muscle mass. The extent to which circulating myostatin levels change in the context of aging is controversial, largely due to methodological barriers.METHODS: We developed a...

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Bergen HR, Farr JN, Vanderboom PM, et al. Myostatin as a mediator of sarcopenia versus homeostatic regulator of muscle mass: insights using a new mass spectrometry-based assay. Skelet Muscle. 2015;5:21doi: 10.1186/s13395-015-0047-5.
Bergen, H. R., Farr, J. N., Vanderboom, P. M., Atkinson, E. J., White, T. A., Singh, R. J., Khosla, S., & LeBrasseur, N. K. (2015). Myostatin as a mediator of sarcopenia versus homeostatic regulator of muscle mass: insights using a new mass spectrometry-based assay. Skeletal muscle, 521. https://doi.org/10.1186/s13395-015-0047-5
Bergen, H Robert, et al. "Myostatin as a mediator of sarcopenia versus homeostatic regulator of muscle mass: insights using a new mass spectrometry-based assay." Skeletal muscle vol. 5 (2015): 21. doi: https://doi.org/10.1186/s13395-015-0047-5
Bergen HR, Farr JN, Vanderboom PM, Atkinson EJ, White TA, Singh RJ, Khosla S, LeBrasseur NK. Myostatin as a mediator of sarcopenia versus homeostatic regulator of muscle mass: insights using a new mass spectrometry-based assay. Skelet Muscle. 2015 Jul 15;5:21. doi: 10.1186/s13395-015-0047-5. eCollection 2015. PMID: 26180626; PMCID: PMC4502935.
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Impact of Technological Advances on Vascular Surgery in the 1990s.

Surgical technology international

Bergan JJ.
PMID: 28581597
Surg Technol Int. 1991 Nov;135-137.

'All change is a miracle to contemplate; but it is a miracle which is taking place every instant.' Henry David Thoreau, Walden, 1854. Progress in vascular surgery is fuelled by technology. Every advance in modern vascular surgery has been...

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Bergan JJ. Impact of Technological Advances on Vascular Surgery in the 1990s. Surg Technol Int. 1991;135-137
Bergan, J. J. (1991). Impact of Technological Advances on Vascular Surgery in the 1990s. Surgical technology international, 135-137.
Bergan, John J. "Impact of Technological Advances on Vascular Surgery in the 1990s." Surgical technology international vol. (1991): 135-137.
Bergan JJ. Impact of Technological Advances on Vascular Surgery in the 1990s. Surg Technol Int. 1991 Nov;135-137. PMID: 28581597.
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Some conditions affecting the evaluation of a conformist.

Journal of personality

JONES EE, JONES RG, GERGEN KJ.
PMID: 13964707
J Pers. 1963 Jun;31:270-88. doi: 10.1111/j.1467-6494.1963.tb01855.x.

No abstract available.

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JONES EE, JONES RG, GERGEN KJ. Some conditions affecting the evaluation of a conformist. J Pers. 1963;31:270-88doi: 10.1111/j.1467-6494.1963.tb01855.x.
JONES, E. E., JONES, R. G., & GERGEN, K. J. (1963). Some conditions affecting the evaluation of a conformist. Journal of personality, 31270-88. https://doi.org/10.1111/j.1467-6494.1963.tb01855.x
JONES, E E, et al. "Some conditions affecting the evaluation of a conformist." Journal of personality vol. 31 (1963): 270-88. doi: https://doi.org/10.1111/j.1467-6494.1963.tb01855.x
JONES EE, JONES RG, GERGEN KJ. Some conditions affecting the evaluation of a conformist. J Pers. 1963 Jun;31:270-88. doi: 10.1111/j.1467-6494.1963.tb01855.x. PMID: 13964707.
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In a heartbeat: Autonomic changes during seizures.

Epilepsy currents

Bergen DC.
PMID: 16175223
Epilepsy Curr. 2005 Sep-Oct;5(5):194-6. doi: 10.1111/j.1535-7511.2005.00062.x.

No abstract available.

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Bergen DC. In a heartbeat: Autonomic changes during seizures. Epilepsy Curr. 2005;5(5):194-6doi: 10.1111/j.1535-7511.2005.00062.x.
Bergen, D. C. (2005). In a heartbeat: Autonomic changes during seizures. Epilepsy currents, 5(5), 194-6. https://doi.org/10.1111/j.1535-7511.2005.00062.x
Bergen, Donna C. "In a heartbeat: Autonomic changes during seizures." Epilepsy currents vol. 5,5 (2005): 194-6. doi: https://doi.org/10.1111/j.1535-7511.2005.00062.x
Bergen DC. In a heartbeat: Autonomic changes during seizures. Epilepsy Curr. 2005 Sep-Oct;5(5):194-6. doi: 10.1111/j.1535-7511.2005.00062.x. PMID: 16175223; PMCID: PMC1201643.
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Diagnosing pseudoseizures: don't hold your breath.

Epilepsy currents

Bergen DC.
PMID: 19127309
Epilepsy Curr. 2008 Nov-Dec;8(6):154-5. doi: 10.1111/j.1535-7511.2008.00277.x.

No abstract available.

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Bergen DC. Diagnosing pseudoseizures: don't hold your breath. Epilepsy Curr. 2008;8(6):154-5doi: 10.1111/j.1535-7511.2008.00277.x.
Bergen, D. C. (2008). Diagnosing pseudoseizures: don't hold your breath. Epilepsy currents, 8(6), 154-5. https://doi.org/10.1111/j.1535-7511.2008.00277.x
Bergen, Donna C. "Diagnosing pseudoseizures: don't hold your breath." Epilepsy currents vol. 8,6 (2008): 154-5. doi: https://doi.org/10.1111/j.1535-7511.2008.00277.x
Bergen DC. Diagnosing pseudoseizures: don't hold your breath. Epilepsy Curr. 2008 Nov-Dec;8(6):154-5. doi: 10.1111/j.1535-7511.2008.00277.x. PMID: 19127309; PMCID: PMC2610232.
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COLLEGE ENTRANCE EXAMITNATIONS.

Science (New York, N.Y.)

Bergen JY.
PMID: 17847399
Science. 1906 Jun 29;23(600):981-2. doi: 10.1126/science.23.600.981-a.

No abstract available.

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Bergen JY. COLLEGE ENTRANCE EXAMITNATIONS. Science. 1906;23(600):981-2doi: 10.1126/science.23.600.981-a.
Bergen, J. Y. (1906). COLLEGE ENTRANCE EXAMITNATIONS. Science (New York, N.Y.), 23(600), 981-2. https://doi.org/10.1126/science.23.600.981-a
Bergen, J Y. "COLLEGE ENTRANCE EXAMITNATIONS." Science (New York, N.Y.) vol. 23,600 (1906): 981-2. doi: https://doi.org/10.1126/science.23.600.981-a
Bergen JY. COLLEGE ENTRANCE EXAMITNATIONS. Science. 1906 Jun 29;23(600):981-2. doi: 10.1126/science.23.600.981-a. PMID: 17847399.
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Using DNA fingerprints to infer familial relationships within NHANES III households.

Journal of the American Statistical Association

Katki HA, Sanders CL, Graubard BI, Bergen AW.
PMID: 20664713
J Am Stat Assoc. 2010 Jun 01;105(490):552-563. doi: 10.1198/jasa.2010.ap09258.

Developing, targeting, and evaluating genomic strategies for population-based disease prevention require population-based data. In response to this urgent need, genotyping has been conducted within the Third National Health and Nutrition Examination (NHANES III), the nationally-representative household-interview health survey in...

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Katki HA, Sanders CL, Graubard BI, et al. Using DNA fingerprints to infer familial relationships within NHANES III households. J Am Stat Assoc. 2010;105(490):552-563doi: 10.1198/jasa.2010.ap09258.
Katki, H. A., Sanders, C. L., Graubard, B. I., & Bergen, A. W. (2010). Using DNA fingerprints to infer familial relationships within NHANES III households. Journal of the American Statistical Association, 105(490), 552-563. https://doi.org/10.1198/jasa.2010.ap09258
Katki, Hormuzd A, et al. "Using DNA fingerprints to infer familial relationships within NHANES III households." Journal of the American Statistical Association vol. 105,490 (2010): 552-563. doi: https://doi.org/10.1198/jasa.2010.ap09258
Katki HA, Sanders CL, Graubard BI, Bergen AW. Using DNA fingerprints to infer familial relationships within NHANES III households. J Am Stat Assoc. 2010 Jun 01;105(490):552-563. doi: 10.1198/jasa.2010.ap09258. PMID: 20664713; PMCID: PMC2909633.
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[The education fund does not function the way it should].

Nederlands tijdschrift voor geneeskunde

Hendrix HL, Berden BJ.
PMID: 19452768
Ned Tijdschr Geneeskd. 2009 Apr 11;153(15):688-90.

No abstract available.

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Hendrix HL, Berden BJ. Het Opleidingsfonds functioneert niet naar behoren. [The education fund does not function the way it should]. Ned Tijdschr Geneeskd. 2009;153(15):688-90
Hendrix, H. L., & Berden, B. J. (2009). Het Opleidingsfonds functioneert niet naar behoren. [The education fund does not function the way it should]. Nederlands tijdschrift voor geneeskunde, 153(15), 688-90.
Hendrix, Henk L, and Berden, Bart J J M. "Het Opleidingsfonds functioneert niet naar behoren." [The education fund does not function the way it should]. Nederlands tijdschrift voor geneeskunde vol. 153,15 (2009): 688-90.
Hendrix HL, Berden BJ. Het Opleidingsfonds functioneert niet naar behoren. [The education fund does not function the way it should]. Ned Tijdschr Geneeskd. 2009 Apr 11;153(15):688-90. Dutch. PMID: 19452768.
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In silico analysis of the molecular machinery underlying aqueous humor production: potential implications for glaucoma.

Journal of clinical bioinformatics

Janssen SF, Gorgels TG, van der Spek PJ, Jansonius NM, Bergen AA.
PMID: 24165276
J Clin Bioinforma. 2013 Oct 28;3(1):21. doi: 10.1186/2043-9113-3-21.

BACKGROUND: The ciliary body epithelia (CBE) of the eye produce the aqueous humor (AH). The equilibrium between the AH production by the CBE and the outflow through the trabecular meshwork ultimately determines the intraocular pressure (IOP). An increased IOP...

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Janssen SF, Gorgels TG, van der Spek PJ, et al. In silico analysis of the molecular machinery underlying aqueous humor production: potential implications for glaucoma. J Clin Bioinforma. 2013;3(1):21doi: 10.1186/2043-9113-3-21.
Janssen, S. F., Gorgels, T. G., van der Spek, P. J., Jansonius, N. M., & Bergen, A. A. (2013). In silico analysis of the molecular machinery underlying aqueous humor production: potential implications for glaucoma. Journal of clinical bioinformatics, 3(1), 21. https://doi.org/10.1186/2043-9113-3-21
Janssen, Sarah F, et al. "In silico analysis of the molecular machinery underlying aqueous humor production: potential implications for glaucoma." Journal of clinical bioinformatics vol. 3,1 (2013): 21. doi: https://doi.org/10.1186/2043-9113-3-21
Janssen SF, Gorgels TG, van der Spek PJ, Jansonius NM, Bergen AA. In silico analysis of the molecular machinery underlying aqueous humor production: potential implications for glaucoma. J Clin Bioinforma. 2013 Oct 28;3(1):21. doi: 10.1186/2043-9113-3-21. PMID: 24165276; PMCID: PMC3875900.
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Showing 1 to 12 of 165 entries