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Machine learning for data-driven discovery in solid Earth geoscience

Geoscience Opportunities for Leadership in Diversity AND Program Evaluation

Bergen KJ, Beroza GC, de MV, Johnson PA.
GSID: oKtahfl7JWMJ
KJ Bergen, PA Johnson, MV de Hoop, GC Beroza - Science, 2019 - science.org

Understanding the behavior of Earth through the diverse fields of the solid Earth geosciences is an increasingly important task. It is made challenging by the complex, interacting, and multiscale processes needed to understand Earth's behavior and by the inaccessibility...

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Bergen, K. J., Johnson, P. A., de Hoop, M. V., & Beroza, G. C. (2019). Machine learning for data-driven discovery in solid Earth geoscience. Science, 363(6433), eaau0323.
Bergen, Karianne J., et al. "Machine learning for data-driven discovery in solid Earth geoscience." Science 363.6433 (2019): eaau0323.
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Career commitments in medicine.

The Journal of the Medical Society of New Jersey

Bergen SS.
PMID: 4508473
J Med Soc N J. 1972 Dec;69(12):1037-9.

No abstract available.

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Bergen SS. Career commitments in medicine. J Med Soc N J. 1972;69(12):1037-9
Bergen, S. S. (1972). Career commitments in medicine. The Journal of the Medical Society of New Jersey, 69(12), 1037-9.
Bergen, S S. "Career commitments in medicine." The Journal of the Medical Society of New Jersey vol. 69,12 (1972): 1037-9.
Bergen SS. Career commitments in medicine. J Med Soc N J. 1972 Dec;69(12):1037-9. PMID: 4508473.
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A Genome-wide Association Study of Lung Cancer Identifies a Region of Chromosome 5p15 Associated with Risk for Adenocarcinoma.

American journal of human genetics

Landi MT, Chatterjee N, Yu K, Goldin LR, Goldstein AM, Rotunno M, Mirabello L, Jacobs K, Wheeler W, Yeager M, Bergen AW, Li Q, Consonni D, Pesatori AC, Wacholder S, Thun M, Diver R, Oken M, Virtamo J, Albanes D, Wang Z, Burdette L, Doheny KF, Pugh EW, Laurie C, Brennan P, Hung R, Gaborieau V, McKay JD, Lathrop M, McLaughlin J, Wang Y, Tsao MS, Spitz MR, Wang Y, Krokan H, Vatten L, Skorpen F, Arnesen E, Benhamou S, Bouchard C, Metspalu A, Vooder T, Nelis M, Välk K, Field JK, Chen C, Goodman G, Sulem P, Thorleifsson G, Rafnar T, Eisen T, Sauter W, Rosenberger A, Bickeböller H, Risch A, Chang-Claude J, Wichmann HE, Stefansson K, Houlston R, Amos CI, Fraumeni JF, Savage SA, Bertazzi PA, Tucker MA, Chanock S, Caporaso NE.
PMID: 28472664
Am J Hum Genet. 2011 Jun 10;88(6):861. doi: 10.1016/j.ajhg.2011.05.003. Epub 2011 Jun 10.

No abstract available.

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Landi MT, Chatterjee N, Yu K, et al. A Genome-wide Association Study of Lung Cancer Identifies a Region of Chromosome 5p15 Associated with Risk for Adenocarcinoma. Am J Hum Genet. 2011;88(6):861doi: 10.1016/j.ajhg.2011.05.003.
Landi, M. T., Chatterjee, N., Yu, K., Goldin, L. R., Goldstein, A. M., Rotunno, M., Mirabello, L., Jacobs, K., Wheeler, W., Yeager, M., Bergen, A. W., Li, Q., Consonni, D., Pesatori, A. C., Wacholder, S., Thun, M., Diver, R., Oken, M., Virtamo, J., Albanes, D., Wang, Z., Burdette, L., Doheny, K. F., Pugh, E. W., Laurie, C., Brennan, P., Hung, R., Gaborieau, V., McKay, J. D., Lathrop, M., McLaughlin, J., Wang, Y., Tsao, M. S., Spitz, M. R., Wang, Y., Krokan, H., Vatten, L., Skorpen, F., Arnesen, E., Benhamou, S., Bouchard, C., Metspalu, A., Vooder, T., Nelis, M., Välk, K., Field, J. K., Chen, C., Goodman, G., Sulem, P., Thorleifsson, G., Rafnar, T., Eisen, T., Sauter, W., Rosenberger, A., Bickeböller, H., Risch, A., Chang-Claude, J., Wichmann, H. E., Stefansson, K., Houlston, R., Amos, C. I., Fraumeni, J. F., Savage, S. A., Bertazzi, P. A., Tucker, M. A., Chanock, S., & Caporaso, N. E. (2011). A Genome-wide Association Study of Lung Cancer Identifies a Region of Chromosome 5p15 Associated with Risk for Adenocarcinoma. American journal of human genetics, 88(6), 861. https://doi.org/10.1016/j.ajhg.2011.05.003
Landi, Maria Teresa, et al. "A Genome-wide Association Study of Lung Cancer Identifies a Region of Chromosome 5p15 Associated with Risk for Adenocarcinoma." American journal of human genetics vol. 88,6 (2011): 861. doi: https://doi.org/10.1016/j.ajhg.2011.05.003
Landi MT, Chatterjee N, Yu K, Goldin LR, Goldstein AM, Rotunno M, Mirabello L, Jacobs K, Wheeler W, Yeager M, Bergen AW, Li Q, Consonni D, Pesatori AC, Wacholder S, Thun M, Diver R, Oken M, Virtamo J, Albanes D, Wang Z, Burdette L, Doheny KF, Pugh EW, Laurie C, Brennan P, Hung R, Gaborieau V, McKay JD, Lathrop M, McLaughlin J, Wang Y, Tsao MS, Spitz MR, Wang Y, Krokan H, Vatten L, Skorpen F, Arnesen E, Benhamou S, Bouchard C, Metspalu A, Vooder T, Nelis M, Välk K, Field JK, Chen C, Goodman G, Sulem P, Thorleifsson G, Rafnar T, Eisen T, Sauter W, Rosenberger A, Bickeböller H, Risch A, Chang-Claude J, Wichmann HE, Stefansson K, Houlston R, Amos CI, Fraumeni JF, Savage SA, Bertazzi PA, Tucker MA, Chanock S, Caporaso NE. A Genome-wide Association Study of Lung Cancer Identifies a Region of Chromosome 5p15 Associated with Risk for Adenocarcinoma. Am J Hum Genet. 2011 Jun 10;88(6):861. doi: 10.1016/j.ajhg.2011.05.003. Epub 2011 Jun 10. PMID: 28472664; PMCID: PMC3113243.
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Myostatin as a mediator of sarcopenia versus homeostatic regulator of muscle mass: insights using a new mass spectrometry-based assay.

Skeletal muscle

Bergen HR, Farr JN, Vanderboom PM, Atkinson EJ, White TA, Singh RJ, Khosla S, LeBrasseur NK.
PMID: 26180626
Skelet Muscle. 2015 Jul 15;5:21. doi: 10.1186/s13395-015-0047-5. eCollection 2015.

BACKGROUND: Myostatin is a protein synthesized and secreted by skeletal muscle that negatively regulates muscle mass. The extent to which circulating myostatin levels change in the context of aging is controversial, largely due to methodological barriers.METHODS: We developed a...

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Bergen HR, Farr JN, Vanderboom PM, et al. Myostatin as a mediator of sarcopenia versus homeostatic regulator of muscle mass: insights using a new mass spectrometry-based assay. Skelet Muscle. 2015;5:21doi: 10.1186/s13395-015-0047-5.
Bergen, H. R., Farr, J. N., Vanderboom, P. M., Atkinson, E. J., White, T. A., Singh, R. J., Khosla, S., & LeBrasseur, N. K. (2015). Myostatin as a mediator of sarcopenia versus homeostatic regulator of muscle mass: insights using a new mass spectrometry-based assay. Skeletal muscle, 521. https://doi.org/10.1186/s13395-015-0047-5
Bergen, H Robert, et al. "Myostatin as a mediator of sarcopenia versus homeostatic regulator of muscle mass: insights using a new mass spectrometry-based assay." Skeletal muscle vol. 5 (2015): 21. doi: https://doi.org/10.1186/s13395-015-0047-5
Bergen HR, Farr JN, Vanderboom PM, Atkinson EJ, White TA, Singh RJ, Khosla S, LeBrasseur NK. Myostatin as a mediator of sarcopenia versus homeostatic regulator of muscle mass: insights using a new mass spectrometry-based assay. Skelet Muscle. 2015 Jul 15;5:21. doi: 10.1186/s13395-015-0047-5. eCollection 2015. PMID: 26180626; PMCID: PMC4502935.
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Underrepresented minorities in medicine.

JAMA

Bergen SS.
PMID: 10974696
JAMA. 2000 Sep 06;284(9):1138-9. doi: 10.1001/jama.284.9.1138.

No abstract available.

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Bergen SS. Underrepresented minorities in medicine. JAMA. 2000;284(9):1138-9doi: 10.1001/jama.284.9.1138.
Bergen, S. S. (2000). Underrepresented minorities in medicine. JAMA, 284(9), 1138-9. https://doi.org/10.1001/jama.284.9.1138
Bergen, S S. "Underrepresented minorities in medicine." JAMA vol. 284,9 (2000): 1138-9. doi: https://doi.org/10.1001/jama.284.9.1138
Bergen SS. Underrepresented minorities in medicine. JAMA. 2000 Sep 06;284(9):1138-9. doi: 10.1001/jama.284.9.1138. PMID: 10974696.
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The reality of recertification for advanced practice nurse faculty.

Journal of professional nursing : official journal of the American Association of Colleges of Nursing

Barger SE.
PMID: 11125962
J Prof Nurs. 2000 Nov-Dec;16(6):312. doi: 10.1053/jpnu.2000.18169.

No abstract available.

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Barger SE. The reality of recertification for advanced practice nurse faculty. J Prof Nurs. 2000;16(6):312doi: 10.1053/jpnu.2000.18169.
Barger, S. E. (2000). The reality of recertification for advanced practice nurse faculty. Journal of professional nursing : official journal of the American Association of Colleges of Nursing, 16(6), 312. https://doi.org/10.1053/jpnu.2000.18169
Barger, S E. "The reality of recertification for advanced practice nurse faculty." Journal of professional nursing : official journal of the American Association of Colleges of Nursing vol. 16,6 (2000): 312. doi: https://doi.org/10.1053/jpnu.2000.18169
Barger SE. The reality of recertification for advanced practice nurse faculty. J Prof Nurs. 2000 Nov-Dec;16(6):312. doi: 10.1053/jpnu.2000.18169. PMID: 11125962.
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In a heartbeat: Autonomic changes during seizures.

Epilepsy currents

Bergen DC.
PMID: 16175223
Epilepsy Curr. 2005 Sep-Oct;5(5):194-6. doi: 10.1111/j.1535-7511.2005.00062.x.

No abstract available.

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Bergen DC. In a heartbeat: Autonomic changes during seizures. Epilepsy Curr. 2005;5(5):194-6doi: 10.1111/j.1535-7511.2005.00062.x.
Bergen, D. C. (2005). In a heartbeat: Autonomic changes during seizures. Epilepsy currents, 5(5), 194-6. https://doi.org/10.1111/j.1535-7511.2005.00062.x
Bergen, Donna C. "In a heartbeat: Autonomic changes during seizures." Epilepsy currents vol. 5,5 (2005): 194-6. doi: https://doi.org/10.1111/j.1535-7511.2005.00062.x
Bergen DC. In a heartbeat: Autonomic changes during seizures. Epilepsy Curr. 2005 Sep-Oct;5(5):194-6. doi: 10.1111/j.1535-7511.2005.00062.x. PMID: 16175223; PMCID: PMC1201643.
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Diagnosing pseudoseizures: don't hold your breath.

Epilepsy currents

Bergen DC.
PMID: 19127309
Epilepsy Curr. 2008 Nov-Dec;8(6):154-5. doi: 10.1111/j.1535-7511.2008.00277.x.

No abstract available.

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Bergen DC. Diagnosing pseudoseizures: don't hold your breath. Epilepsy Curr. 2008;8(6):154-5doi: 10.1111/j.1535-7511.2008.00277.x.
Bergen, D. C. (2008). Diagnosing pseudoseizures: don't hold your breath. Epilepsy currents, 8(6), 154-5. https://doi.org/10.1111/j.1535-7511.2008.00277.x
Bergen, Donna C. "Diagnosing pseudoseizures: don't hold your breath." Epilepsy currents vol. 8,6 (2008): 154-5. doi: https://doi.org/10.1111/j.1535-7511.2008.00277.x
Bergen DC. Diagnosing pseudoseizures: don't hold your breath. Epilepsy Curr. 2008 Nov-Dec;8(6):154-5. doi: 10.1111/j.1535-7511.2008.00277.x. PMID: 19127309; PMCID: PMC2610232.
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COLLEGE ENTRANCE EXAMITNATIONS.

Science (New York, N.Y.)

Bergen JY.
PMID: 17847399
Science. 1906 Jun 29;23(600):981-2. doi: 10.1126/science.23.600.981-a.

No abstract available.

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Bergen JY. COLLEGE ENTRANCE EXAMITNATIONS. Science. 1906;23(600):981-2doi: 10.1126/science.23.600.981-a.
Bergen, J. Y. (1906). COLLEGE ENTRANCE EXAMITNATIONS. Science (New York, N.Y.), 23(600), 981-2. https://doi.org/10.1126/science.23.600.981-a
Bergen, J Y. "COLLEGE ENTRANCE EXAMITNATIONS." Science (New York, N.Y.) vol. 23,600 (1906): 981-2. doi: https://doi.org/10.1126/science.23.600.981-a
Bergen JY. COLLEGE ENTRANCE EXAMITNATIONS. Science. 1906 Jun 29;23(600):981-2. doi: 10.1126/science.23.600.981-a. PMID: 17847399.
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Using DNA fingerprints to infer familial relationships within NHANES III households.

Journal of the American Statistical Association

Katki HA, Sanders CL, Graubard BI, Bergen AW.
PMID: 20664713
J Am Stat Assoc. 2010 Jun 01;105(490):552-563. doi: 10.1198/jasa.2010.ap09258.

Developing, targeting, and evaluating genomic strategies for population-based disease prevention require population-based data. In response to this urgent need, genotyping has been conducted within the Third National Health and Nutrition Examination (NHANES III), the nationally-representative household-interview health survey in...

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Katki HA, Sanders CL, Graubard BI, et al. Using DNA fingerprints to infer familial relationships within NHANES III households. J Am Stat Assoc. 2010;105(490):552-563doi: 10.1198/jasa.2010.ap09258.
Katki, H. A., Sanders, C. L., Graubard, B. I., & Bergen, A. W. (2010). Using DNA fingerprints to infer familial relationships within NHANES III households. Journal of the American Statistical Association, 105(490), 552-563. https://doi.org/10.1198/jasa.2010.ap09258
Katki, Hormuzd A, et al. "Using DNA fingerprints to infer familial relationships within NHANES III households." Journal of the American Statistical Association vol. 105,490 (2010): 552-563. doi: https://doi.org/10.1198/jasa.2010.ap09258
Katki HA, Sanders CL, Graubard BI, Bergen AW. Using DNA fingerprints to infer familial relationships within NHANES III households. J Am Stat Assoc. 2010 Jun 01;105(490):552-563. doi: 10.1198/jasa.2010.ap09258. PMID: 20664713; PMCID: PMC2909633.
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In silico analysis of the molecular machinery underlying aqueous humor production: potential implications for glaucoma.

Journal of clinical bioinformatics

Janssen SF, Gorgels TG, van der Spek PJ, Jansonius NM, Bergen AA.
PMID: 24165276
J Clin Bioinforma. 2013 Oct 28;3(1):21. doi: 10.1186/2043-9113-3-21.

BACKGROUND: The ciliary body epithelia (CBE) of the eye produce the aqueous humor (AH). The equilibrium between the AH production by the CBE and the outflow through the trabecular meshwork ultimately determines the intraocular pressure (IOP). An increased IOP...

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Janssen SF, Gorgels TG, van der Spek PJ, et al. In silico analysis of the molecular machinery underlying aqueous humor production: potential implications for glaucoma. J Clin Bioinforma. 2013;3(1):21doi: 10.1186/2043-9113-3-21.
Janssen, S. F., Gorgels, T. G., van der Spek, P. J., Jansonius, N. M., & Bergen, A. A. (2013). In silico analysis of the molecular machinery underlying aqueous humor production: potential implications for glaucoma. Journal of clinical bioinformatics, 3(1), 21. https://doi.org/10.1186/2043-9113-3-21
Janssen, Sarah F, et al. "In silico analysis of the molecular machinery underlying aqueous humor production: potential implications for glaucoma." Journal of clinical bioinformatics vol. 3,1 (2013): 21. doi: https://doi.org/10.1186/2043-9113-3-21
Janssen SF, Gorgels TG, van der Spek PJ, Jansonius NM, Bergen AA. In silico analysis of the molecular machinery underlying aqueous humor production: potential implications for glaucoma. J Clin Bioinforma. 2013 Oct 28;3(1):21. doi: 10.1186/2043-9113-3-21. PMID: 24165276; PMCID: PMC3875900.
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Characterization and Integration of Terahertz Technology within Microfluidic Platforms.

Micromachines

Alfihed S, Bergen MH, Ciocoiu A, Holzman JF, Foulds IG.
PMID: 30424386
Micromachines (Basel). 2018 Sep 11;9(9). doi: 10.3390/mi9090453.

In this work, the prospects of integrating terahertz (THz) time-domain spectroscopy (TDS) within polymer-based microfluidic platforms are investigated. The work considers platforms based upon the polar polymers polyethylene terephthalate (PET), polycarbonate (PC), polymethyl-methacrylate (PMMA), polydimethylsiloxane (PDMS), and the nonpolar...

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Alfihed S, Bergen MH, Ciocoiu A, et al. Characterization and Integration of Terahertz Technology within Microfluidic Platforms. Micromachines (Basel). 2018;9(9)doi: 10.3390/mi9090453.
Alfihed, S., Bergen, M. H., Ciocoiu, A., Holzman, J. F., & Foulds, I. G. (2018). Characterization and Integration of Terahertz Technology within Microfluidic Platforms. Micromachines, 9(9), . https://doi.org/10.3390/mi9090453
Alfihed, Salman, et al. "Characterization and Integration of Terahertz Technology within Microfluidic Platforms." Micromachines vol. 9,9 (2018). doi: https://doi.org/10.3390/mi9090453
Alfihed S, Bergen MH, Ciocoiu A, Holzman JF, Foulds IG. Characterization and Integration of Terahertz Technology within Microfluidic Platforms. Micromachines (Basel). 2018 Sep 11;9(9). doi: 10.3390/mi9090453. PMID: 30424386; PMCID: PMC6187527.
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Showing 1 to 12 of 146 entries