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Examining the recruitment, placement, and career trajectories of secondary mathematics teachers prepared for high-need schools

Stem career programs

Chapin S, Zahner W.
GSID: osgggj-sl7kJ
W Zahner, S Chapin, R Levine, LA He… - Teachers College …, 2019 - journals.sagepub.com

Background School leaders are challenged by the relatively limited supply and high turnover of qualified secondary school mathematics teachers. In response, policy makers and teacher educators have developed various pathways and incentives to recruit, train, place, and support highly...

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Zahner, W., Chapin, S., Levine, R., He, L. A., & Afonso, R. (2019). Examining the recruitment, placement, and career trajectories of secondary mathematics teachers prepared for high-need schools. Teachers College Record, 121(2), 1-36.
Zahner, William, et al. "Examining the recruitment, placement, and career trajectories of secondary mathematics teachers prepared for high-need schools." Teachers College Record 121.2 (2019): 1-36.
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Draft Genome Assembly of Klebsiella pneumoniae Type Strain ATCC 13883.

Genome announcements

Daligault HE, Davenport KW, Minogue TD, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Lo CC, Meincke L, Munk AC, Palacios GF, Redden CL, Johnson SL.
PMID: 25291763
Genome Announc. 2014 Sep 25;2(5). doi: 10.1128/genomeA.00939-14.

Klebsiella pneumoniae is a common cause of antibiotic-resistant bacterial infections in immunocompromised individuals. Here, we present the 5.54-Mb scaffolded assembly of the type strain K. pneumoniae type strain ATCC 13883, as deposited in GenBank under accession no. JOOW00000000.

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Daligault HE, Davenport KW, Minogue TD, et al. Draft Genome Assembly of Klebsiella pneumoniae Type Strain ATCC 13883. Genome Announc. 2014;2(5)doi: 10.1128/genomeA.00939-14.
Daligault, H. E., Davenport, K. W., Minogue, T. D., Bishop-Lilly, K. A., Bruce, D. C., Chain, P. S., Coyne, S. R., Frey, K. G., Jaissle, J., Koroleva, G. I., Ladner, J. T., Lo, C. C., Meincke, L., Munk, A. C., Palacios, G. F., Redden, C. L., & Johnson, S. L. (2014). Draft Genome Assembly of Klebsiella pneumoniae Type Strain ATCC 13883. Genome announcements, 2(5), . https://doi.org/10.1128/genomeA.00939-14
Daligault, H E, et al. "Draft Genome Assembly of Klebsiella pneumoniae Type Strain ATCC 13883." Genome announcements vol. 2,5 (2014). doi: https://doi.org/10.1128/genomeA.00939-14
Daligault HE, Davenport KW, Minogue TD, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Lo CC, Meincke L, Munk AC, Palacios GF, Redden CL, Johnson SL. Draft Genome Assembly of Klebsiella pneumoniae Type Strain ATCC 13883. Genome Announc. 2014 Sep 25;2(5). doi: 10.1128/genomeA.00939-14. PMID: 25291763; PMCID: PMC4175198.
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Draft Genome Sequence of Thauera sp. Strain SWB20, Isolated from a Singapore Wastewater Treatment Facility Using Gel Microdroplets.

Genome announcements

Dichosa AE, Davenport KW, Li PE, Ahmed SA, Daligault H, Gleasner CD, Kunde Y, McMurry K, Lo CC, Reitenga KG, Daughton AR, Shen X, Frietze S, Wang D, Johnson SL, Drautz-Moses DI, Schuster S, Chain PS, Han C.
PMID: 25792053
Genome Announc. 2015 Mar 19;3(2). doi: 10.1128/genomeA.00132-15.

We report here the genome sequence of Thauera sp. strain SWB20, isolated from a Singaporean wastewater treatment facility using gel microdroplets (GMDs) and single-cell genomics (SCG). This approach provided a single clonal microcolony that was sufficient to obtain a...

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Dichosa AE, Davenport KW, Li PE, et al. Draft Genome Sequence of Thauera sp. Strain SWB20, Isolated from a Singapore Wastewater Treatment Facility Using Gel Microdroplets. Genome Announc. 2015;3(2)doi: 10.1128/genomeA.00132-15.
Dichosa, A. E., Davenport, K. W., Li, P. E., Ahmed, S. A., Daligault, H., Gleasner, C. D., Kunde, Y., McMurry, K., Lo, C. C., Reitenga, K. G., Daughton, A. R., Shen, X., Frietze, S., Wang, D., Johnson, S. L., Drautz-Moses, D. I., Schuster, S., Chain, P. S., & Han, C. (2015). Draft Genome Sequence of Thauera sp. Strain SWB20, Isolated from a Singapore Wastewater Treatment Facility Using Gel Microdroplets. Genome announcements, 3(2), . https://doi.org/10.1128/genomeA.00132-15
Dichosa, Armand E K, et al. "Draft Genome Sequence of Thauera sp. Strain SWB20, Isolated from a Singapore Wastewater Treatment Facility Using Gel Microdroplets." Genome announcements vol. 3,2 (2015). doi: https://doi.org/10.1128/genomeA.00132-15
Dichosa AE, Davenport KW, Li PE, Ahmed SA, Daligault H, Gleasner CD, Kunde Y, McMurry K, Lo CC, Reitenga KG, Daughton AR, Shen X, Frietze S, Wang D, Johnson SL, Drautz-Moses DI, Schuster S, Chain PS, Han C. Draft Genome Sequence of Thauera sp. Strain SWB20, Isolated from a Singapore Wastewater Treatment Facility Using Gel Microdroplets. Genome Announc. 2015 Mar 19;3(2). doi: 10.1128/genomeA.00132-15. PMID: 25792053; PMCID: PMC4395064.
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Whole-Genome Sequences of 80 Environmental and Clinical Isolates of Burkholderia pseudomallei.

Genome announcements

Johnson SL, Baker AL, Chain PS, Currie BJ, Daligault HE, Davenport KW, Davis CB, Inglis TJ, Kaestli M, Koren S, Mayo M, Merritt AJ, Price EP, Sarovich DS, Warner J, Rosovitz MJ.
PMID: 25676747
Genome Announc. 2015 Feb 12;3(1). doi: 10.1128/genomeA.01282-14.

Here, we present the draft genome sequences of 80 isolates of Burkholderia pseudomallei. The isolates represent clinical cases of melioidosis and environmental isolates from regions in Australia and Papua New Guinea where B. pseudomallei is endemic. The genomes provide...

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Johnson SL, Baker AL, Chain PS, et al. Whole-Genome Sequences of 80 Environmental and Clinical Isolates of Burkholderia pseudomallei. Genome Announc. 2015;3(1)doi: 10.1128/genomeA.01282-14.
Johnson, S. L., Baker, A. L., Chain, P. S., Currie, B. J., Daligault, H. E., Davenport, K. W., Davis, C. B., Inglis, T. J., Kaestli, M., Koren, S., Mayo, M., Merritt, A. J., Price, E. P., Sarovich, D. S., Warner, J., & Rosovitz, M. J. (2015). Whole-Genome Sequences of 80 Environmental and Clinical Isolates of Burkholderia pseudomallei. Genome announcements, 3(1), . https://doi.org/10.1128/genomeA.01282-14
Johnson, Shannon L, et al. "Whole-Genome Sequences of 80 Environmental and Clinical Isolates of Burkholderia pseudomallei." Genome announcements vol. 3,1 (2015). doi: https://doi.org/10.1128/genomeA.01282-14
Johnson SL, Baker AL, Chain PS, Currie BJ, Daligault HE, Davenport KW, Davis CB, Inglis TJ, Kaestli M, Koren S, Mayo M, Merritt AJ, Price EP, Sarovich DS, Warner J, Rosovitz MJ. Whole-Genome Sequences of 80 Environmental and Clinical Isolates of Burkholderia pseudomallei. Genome Announc. 2015 Feb 12;3(1). doi: 10.1128/genomeA.01282-14. PMID: 25676747; PMCID: PMC4333647.
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Genome Sequence of Anoxybacillus geothermalis Strain GSsed3, a Novel Thermophilic Endospore-Forming Species.

Genome announcements

Filippidou S, Jaussi M, Junier T, Wunderlin T, Roussel-Delif L, Jeanneret N, Vieth-Hillebrand A, Vetter A, Regenspurg S, Johnson SL, McMurry K, Gleasner CD, Lo CC, Li P, Vuyisich M, Chain PS, Junier P.
PMID: 26067952
Genome Announc. 2015 Jun 11;3(3). doi: 10.1128/genomeA.00575-15.

Anoxybacillus geothermalis strain GSsed3 is an endospore-forming thermophilic bacterium isolated from filter deposits in a geothermal site. This novel species has a larger genome size (7.2 Mb) than that of any other Anoxybacillus species, and it possesses genes that...

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Filippidou S, Jaussi M, Junier T, et al. Genome Sequence of Anoxybacillus geothermalis Strain GSsed3, a Novel Thermophilic Endospore-Forming Species. Genome Announc. 2015;3(3)doi: 10.1128/genomeA.00575-15.
Filippidou, S., Jaussi, M., Junier, T., Wunderlin, T., Roussel-Delif, L., Jeanneret, N., Vieth-Hillebrand, A., Vetter, A., Regenspurg, S., Johnson, S. L., McMurry, K., Gleasner, C. D., Lo, C. C., Li, P., Vuyisich, M., Chain, P. S., & Junier, P. (2015). Genome Sequence of Anoxybacillus geothermalis Strain GSsed3, a Novel Thermophilic Endospore-Forming Species. Genome announcements, 3(3), . https://doi.org/10.1128/genomeA.00575-15
Filippidou, Sevasti, et al. "Genome Sequence of Anoxybacillus geothermalis Strain GSsed3, a Novel Thermophilic Endospore-Forming Species." Genome announcements vol. 3,3 (2015). doi: https://doi.org/10.1128/genomeA.00575-15
Filippidou S, Jaussi M, Junier T, Wunderlin T, Roussel-Delif L, Jeanneret N, Vieth-Hillebrand A, Vetter A, Regenspurg S, Johnson SL, McMurry K, Gleasner CD, Lo CC, Li P, Vuyisich M, Chain PS, Junier P. Genome Sequence of Anoxybacillus geothermalis Strain GSsed3, a Novel Thermophilic Endospore-Forming Species. Genome Announc. 2015 Jun 11;3(3). doi: 10.1128/genomeA.00575-15. PMID: 26067952; PMCID: PMC4463517.
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Genome Sequence of Kosakonia radicincitans Strain YD4, a Plant Growth-Promoting Rhizobacterium Isolated from Yerba Mate (Ilex paraguariensis St. Hill.).

Genome announcements

Bergottini VM, Filippidou S, Junier T, Johnson S, Chain PS, Otegui MB, Zapata PD, Junier P.
PMID: 25838492
Genome Announc. 2015 Apr 02;3(2). doi: 10.1128/genomeA.00239-15.

Kosakonia radicincitans strain YD4 is a rhizospheric isolate from yerba mate (Ilex paraguariensis St. Hill.) with plant growth-promoting effects on this crop. Genes involved in different plant growth-promoting activities are present in this genome, suggesting its potential as a...

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Bergottini VM, Filippidou S, Junier T, et al. Genome Sequence of Kosakonia radicincitans Strain YD4, a Plant Growth-Promoting Rhizobacterium Isolated from Yerba Mate (Ilex paraguariensis St. Hill.). Genome Announc. 2015;3(2)doi: 10.1128/genomeA.00239-15.
Bergottini, V. M., Filippidou, S., Junier, T., Johnson, S., Chain, P. S., Otegui, M. B., Zapata, P. D., & Junier, P. (2015). Genome Sequence of Kosakonia radicincitans Strain YD4, a Plant Growth-Promoting Rhizobacterium Isolated from Yerba Mate (Ilex paraguariensis St. Hill.). Genome announcements, 3(2), . https://doi.org/10.1128/genomeA.00239-15
Bergottini, Veronica M, et al. "Genome Sequence of Kosakonia radicincitans Strain YD4, a Plant Growth-Promoting Rhizobacterium Isolated from Yerba Mate (Ilex paraguariensis St. Hill.)." Genome announcements vol. 3,2 (2015). doi: https://doi.org/10.1128/genomeA.00239-15
Bergottini VM, Filippidou S, Junier T, Johnson S, Chain PS, Otegui MB, Zapata PD, Junier P. Genome Sequence of Kosakonia radicincitans Strain YD4, a Plant Growth-Promoting Rhizobacterium Isolated from Yerba Mate (Ilex paraguariensis St. Hill.). Genome Announc. 2015 Apr 02;3(2). doi: 10.1128/genomeA.00239-15. PMID: 25838492; PMCID: PMC4384496.
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Thirty-Two Complete Genome Assemblies of Nine Yersinia Species, Including Y. pestis, Y. pseudotuberculosis, and Y. enterocolitica.

Genome announcements

Johnson SL, Daligault HE, Davenport KW, Jaissle J, Frey KG, Ladner JT, Broomall SM, Bishop-Lilly KA, Bruce DC, Coyne SR, Gibbons HS, Lo CC, Munk AC, Rosenzweig CN, Koroleva GI, Palacios GF, Redden CL, Xu Y, Minogue TD, Chain PS.
PMID: 25931590
Genome Announc. 2015 Apr 30;3(2). doi: 10.1128/genomeA.00148-15.

The genus Yersinia includes three human pathogens, of which Yersinia pestis is responsible for >2,000 illnesses each year. To aid in the development of detection assays and aid further phylogenetic elucidation, we sequenced and assembled the complete genomes of...

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Johnson SL, Daligault HE, Davenport KW, et al. Thirty-Two Complete Genome Assemblies of Nine Yersinia Species, Including Y. pestis, Y. pseudotuberculosis, and Y. enterocolitica. Genome Announc. 2015;3(2)doi: 10.1128/genomeA.00148-15.
Johnson, S. L., Daligault, H. E., Davenport, K. W., Jaissle, J., Frey, K. G., Ladner, J. T., Broomall, S. M., Bishop-Lilly, K. A., Bruce, D. C., Coyne, S. R., Gibbons, H. S., Lo, C. C., Munk, A. C., Rosenzweig, C. N., Koroleva, G. I., Palacios, G. F., Redden, C. L., Xu, Y., Minogue, T. D., & Chain, P. S. (2015). Thirty-Two Complete Genome Assemblies of Nine Yersinia Species, Including Y. pestis, Y. pseudotuberculosis, and Y. enterocolitica. Genome announcements, 3(2), . https://doi.org/10.1128/genomeA.00148-15
Johnson, Shannon L, et al. "Thirty-Two Complete Genome Assemblies of Nine Yersinia Species, Including Y. pestis, Y. pseudotuberculosis, and Y. enterocolitica." Genome announcements vol. 3,2 (2015). doi: https://doi.org/10.1128/genomeA.00148-15
Johnson SL, Daligault HE, Davenport KW, Jaissle J, Frey KG, Ladner JT, Broomall SM, Bishop-Lilly KA, Bruce DC, Coyne SR, Gibbons HS, Lo CC, Munk AC, Rosenzweig CN, Koroleva GI, Palacios GF, Redden CL, Xu Y, Minogue TD, Chain PS. Thirty-Two Complete Genome Assemblies of Nine Yersinia Species, Including Y. pestis, Y. pseudotuberculosis, and Y. enterocolitica. Genome Announc. 2015 Apr 30;3(2). doi: 10.1128/genomeA.00148-15. PMID: 25931590; PMCID: PMC4417686.
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Challenges and opportunities in understanding microbial communities with metagenome assembly (accompanied by IPython Notebook tutorial).

Frontiers in microbiology

Howe A, Chain PS.
PMID: 26217314
Front Microbiol. 2015 Jul 09;6:678. doi: 10.3389/fmicb.2015.00678. eCollection 2015.

Metagenomic investigations hold great promise for informing the genetics, physiology, and ecology of environmental microorganisms. Current challenges for metagenomic analysis are related to our ability to connect the dots between sequencing reads, their population of origin, and their encoding...

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Howe A, Chain PS. Challenges and opportunities in understanding microbial communities with metagenome assembly (accompanied by IPython Notebook tutorial). Front Microbiol. 2015;6:678doi: 10.3389/fmicb.2015.00678.
Howe, A., & Chain, P. S. (2015). Challenges and opportunities in understanding microbial communities with metagenome assembly (accompanied by IPython Notebook tutorial). Frontiers in microbiology, 6678. https://doi.org/10.3389/fmicb.2015.00678
Howe, Adina, and Chain, Patrick S G. "Challenges and opportunities in understanding microbial communities with metagenome assembly (accompanied by IPython Notebook tutorial)." Frontiers in microbiology vol. 6 (2015): 678. doi: https://doi.org/10.3389/fmicb.2015.00678
Howe A, Chain PS. Challenges and opportunities in understanding microbial communities with metagenome assembly (accompanied by IPython Notebook tutorial). Front Microbiol. 2015 Jul 09;6:678. doi: 10.3389/fmicb.2015.00678. eCollection 2015. PMID: 26217314; PMCID: PMC4496567.
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Genome Sequence of the Historical Clinical Isolate Burkholderia pseudomallei PHLS 6.

Genome announcements

D'haeseleer P, Johnson SL, Davenport KW, Chain PS, Schoeniger J, Ray D, Sinha A, Williams KP, Peña J, Branda SS, El-Etr S.
PMID: 27365360
Genome Announc. 2016 Jun 30;4(3). doi: 10.1128/genomeA.00649-16.

Here, we present the draft genome sequence of Burkholderia pseudomallei PHLS 6, a virulent clinical strain isolated from a melioidosis patient in Bangladesh in 1960. The draft genome consists of 39 contigs and is 7,322,181 bp long.

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D'haeseleer P, Johnson SL, Davenport KW, et al. Genome Sequence of the Historical Clinical Isolate Burkholderia pseudomallei PHLS 6. Genome Announc. 2016;4(3)doi: 10.1128/genomeA.00649-16.
D'haeseleer, P., Johnson, S. L., Davenport, K. W., Chain, P. S., Schoeniger, J., Ray, D., Sinha, A., Williams, K. P., Peña, J., Branda, S. S., & El-Etr, S. (2016). Genome Sequence of the Historical Clinical Isolate Burkholderia pseudomallei PHLS 6. Genome announcements, 4(3), . https://doi.org/10.1128/genomeA.00649-16
D'haeseleer, Patrik, et al. "Genome Sequence of the Historical Clinical Isolate Burkholderia pseudomallei PHLS 6." Genome announcements vol. 4,3 (2016). doi: https://doi.org/10.1128/genomeA.00649-16
D'haeseleer P, Johnson SL, Davenport KW, Chain PS, Schoeniger J, Ray D, Sinha A, Williams KP, Peña J, Branda SS, El-Etr S. Genome Sequence of the Historical Clinical Isolate Burkholderia pseudomallei PHLS 6. Genome Announc. 2016 Jun 30;4(3). doi: 10.1128/genomeA.00649-16. PMID: 27365360; PMCID: PMC4929523.
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Under-detection of endospore-forming Firmicutes in metagenomic data.

Computational and structural biotechnology journal

Filippidou S, Junier T, Wunderlin T, Lo CC, Li PE, Chain PS, Junier P.
PMID: 25973144
Comput Struct Biotechnol J. 2015 Apr 25;13:299-306. doi: 10.1016/j.csbj.2015.04.002. eCollection 2015.

Microbial diversity studies based on metagenomic sequencing have greatly enhanced our knowledge of the microbial world. However, one caveat is the fact that not all microorganisms are equally well detected, questioning the universality of this approach. Firmicutes are known...

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Filippidou S, Junier T, Wunderlin T, et al. Under-detection of endospore-forming Firmicutes in metagenomic data. Comput Struct Biotechnol J. 2015;13:299-306doi: 10.1016/j.csbj.2015.04.002.
Filippidou, S., Junier, T., Wunderlin, T., Lo, C. C., Li, P. E., Chain, P. S., & Junier, P. (2015). Under-detection of endospore-forming Firmicutes in metagenomic data. Computational and structural biotechnology journal, 13299-306. https://doi.org/10.1016/j.csbj.2015.04.002
Filippidou, Sevasti, et al. "Under-detection of endospore-forming Firmicutes in metagenomic data." Computational and structural biotechnology journal vol. 13 (2015): 299-306. doi: https://doi.org/10.1016/j.csbj.2015.04.002
Filippidou S, Junier T, Wunderlin T, Lo CC, Li PE, Chain PS, Junier P. Under-detection of endospore-forming Firmicutes in metagenomic data. Comput Struct Biotechnol J. 2015 Apr 25;13:299-306. doi: 10.1016/j.csbj.2015.04.002. eCollection 2015. PMID: 25973144; PMCID: PMC4427659.
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Building International Genomics Collaboration for Global Health Security.

Frontiers in public health

Cui HH, Erkkila T, Chain PS, Vuyisich M.
PMID: 26697418
Front Public Health. 2015 Dec 07;3:264. doi: 10.3389/fpubh.2015.00264. eCollection 2015.

Genome science and technologies are transforming life sciences globally in many ways and becoming a highly desirable area for international collaboration to strengthen global health. The Genome Science Program at the Los Alamos National Laboratory is leveraging a long...

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Cui HH, Erkkila T, Chain PS, et al. Building International Genomics Collaboration for Global Health Security. Front Public Health. 2015;3:264doi: 10.3389/fpubh.2015.00264.
Cui, H. H., Erkkila, T., Chain, P. S., & Vuyisich, M. (2015). Building International Genomics Collaboration for Global Health Security. Frontiers in public health, 3264. https://doi.org/10.3389/fpubh.2015.00264
Cui, Helen H, et al. "Building International Genomics Collaboration for Global Health Security." Frontiers in public health vol. 3 (2015): 264. doi: https://doi.org/10.3389/fpubh.2015.00264
Cui HH, Erkkila T, Chain PS, Vuyisich M. Building International Genomics Collaboration for Global Health Security. Front Public Health. 2015 Dec 07;3:264. doi: 10.3389/fpubh.2015.00264. eCollection 2015. PMID: 26697418; PMCID: PMC4670856.
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Climate change. Permafrost and the global carbon budget.

Science (New York, N.Y.)

Zimov SA, Schuur EA, Chapin FS.
PMID: 16778046
Science. 2006 Jun 16;312(5780):1612-3. doi: 10.1126/science.1128908.

No abstract available.

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Zimov SA, Schuur EA, Chapin FS. Climate change. Permafrost and the global carbon budget. Science. 2006;312(5780):1612-3doi: 10.1126/science.1128908.
Zimov, S. A., Schuur, E. A., & Chapin, F. S. (2006). Climate change. Permafrost and the global carbon budget. Science (New York, N.Y.), 312(5780), 1612-3. https://doi.org/10.1126/science.1128908
Zimov, Sergey A, et al. "Climate change. Permafrost and the global carbon budget." Science (New York, N.Y.) vol. 312,5780 (2006): 1612-3. doi: https://doi.org/10.1126/science.1128908
Zimov SA, Schuur EA, Chapin FS. Climate change. Permafrost and the global carbon budget. Science. 2006 Jun 16;312(5780):1612-3. doi: 10.1126/science.1128908. PMID: 16778046.
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