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Virus attenuation by genome-scale changes in codon pair bias

Science and underrepresented

Coleman JR, Futcher B, Papamichail D, Skiena S.
GSID: qgTjFGH3qtwJ
JR Coleman, D Papamichail, S Skiena, B Futcher… - Science, 2008 - science.org

… We now find that underrepresented codon pairs cause poor translation and attenuation in … of such tRNAs are underrepresented; our translation data are consistent with this theory. …

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Coleman, J. R., Papamichail, D., Skiena, S., Futcher, B., Wimmer, E., & Mueller, S. (2008). Virus attenuation by genome-scale changes in codon pair bias. Science, 320(5884), 1784-1787.
Coleman, J. Robert, et al. "Virus attenuation by genome-scale changes in codon pair bias." Science 320.5884 (2008): 1784-1787.
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Racial bias in case presentation.

Journal of general internal medicine

Thomas CR, Coleman JE.
PMID: 2231048
J Gen Intern Med. 1990 Sep-Oct;5(5):456-7. doi: 10.1007/BF02599443.

No abstract available.

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Thomas CR, Coleman JE. Racial bias in case presentation. J Gen Intern Med. 1990;5(5):456-7doi: 10.1007/BF02599443.
Thomas, C. R., & Coleman, J. E. (1990). Racial bias in case presentation. Journal of general internal medicine, 5(5), 456-7. https://doi.org/10.1007/BF02599443
Thomas, C R, and Coleman, J E. "Racial bias in case presentation." Journal of general internal medicine vol. 5,5 (1990): 456-7. doi: https://doi.org/10.1007/BF02599443
Thomas CR, Coleman JE. Racial bias in case presentation. J Gen Intern Med. 1990 Sep-Oct;5(5):456-7. doi: 10.1007/BF02599443. PMID: 2231048.
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In Reply.

Obstetrics and gynecology

Gaydos C, Coleman JS.
PMID: 28937558
Obstet Gynecol. 2017 Oct;130(4):912-913. doi: 10.1097/AOG.0000000000002281.

No abstract available.

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Gaydos C, Coleman JS. In Reply. Obstet Gynecol. 2017;130(4):912-913doi: 10.1097/AOG.0000000000002281.
Gaydos, C., & Coleman, J. S. (2017). In Reply. Obstetrics and gynecology, 130(4), 912-913. https://doi.org/10.1097/AOG.0000000000002281
Gaydos, Charlotte, and Coleman, Jenell S. "In Reply." Obstetrics and gynecology vol. 130,4 (2017): 912-913. doi: https://doi.org/10.1097/AOG.0000000000002281
Gaydos C, Coleman JS. In Reply. Obstet Gynecol. 2017 Oct;130(4):912-913. doi: 10.1097/AOG.0000000000002281. PMID: 28937558.
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Quality of vitamin K antagonist control and outcomes in atrial fibrillation patients: a meta-analysis and meta-regression.

Thrombosis journal

Mearns ES, White CM, Kohn CG, Hawthorne J, Song JS, Meng J, Schein JR, Raut MK, Coleman CI.
PMID: 25024644
Thromb J. 2014 Jun 24;12:14. doi: 10.1186/1477-9560-12-14. eCollection 2014.

BACKGROUND: Atrial fibrillation (AF) patients frequently require anticoagulation with vitamin K antagonists (VKAs) to prevent thromboembolic events, but their use increases the risk of hemorrhage. We evaluated time spent in therapeutic range (TTR), proportion of international normalized ratio (INR)...

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Mearns ES, White CM, Kohn CG, et al. Quality of vitamin K antagonist control and outcomes in atrial fibrillation patients: a meta-analysis and meta-regression. Thromb J. 2014;12:14doi: 10.1186/1477-9560-12-14.
Mearns, E. S., White, C. M., Kohn, C. G., Hawthorne, J., Song, J. S., Meng, J., Schein, J. R., Raut, M. K., & Coleman, C. I. (2014). Quality of vitamin K antagonist control and outcomes in atrial fibrillation patients: a meta-analysis and meta-regression. Thrombosis journal, 1214. https://doi.org/10.1186/1477-9560-12-14
Mearns, Elizabeth S, et al. "Quality of vitamin K antagonist control and outcomes in atrial fibrillation patients: a meta-analysis and meta-regression." Thrombosis journal vol. 12 (2014): 14. doi: https://doi.org/10.1186/1477-9560-12-14
Mearns ES, White CM, Kohn CG, Hawthorne J, Song JS, Meng J, Schein JR, Raut MK, Coleman CI. Quality of vitamin K antagonist control and outcomes in atrial fibrillation patients: a meta-analysis and meta-regression. Thromb J. 2014 Jun 24;12:14. doi: 10.1186/1477-9560-12-14. eCollection 2014. PMID: 25024644; PMCID: PMC4094926.
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Nanopatterning and Electrical Tuning of MoS2 Layers with a Subnanometer Helium Ion Beam.

Nano letters

Fox DS, Zhou Y, Maguire P, O'Neill A, Ó'Coileáin C, Gatensby R, Glushenkov AM, Tao T, Duesberg GS, Shvets IV, Abid M, Abid M, Wu HC, Chen Y, Coleman JN, Donegan JF, Zhang H.
PMID: 26154305
Nano Lett. 2015 Aug 12;15(8):5307-13. doi: 10.1021/acs.nanolett.5b01673. Epub 2015 Jul 15.

We report subnanometer modification enabled by an ultrafine helium ion beam. By adjusting ion dose and the beam profile, structural defects were controllably introduced in a few-layer molybdenum disulfide (MoS2) sample and its stoichiometry was modified by preferential sputtering...

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Fox DS, Zhou Y, Maguire P, et al. Nanopatterning and Electrical Tuning of MoS2 Layers with a Subnanometer Helium Ion Beam. Nano Lett. 2015;15(8):5307-13doi: 10.1021/acs.nanolett.5b01673.
Fox, D. S., Zhou, Y., Maguire, P., O'Neill, A., Ó'Coileáin, C., Gatensby, R., Glushenkov, A. M., Tao, T., Duesberg, G. S., Shvets, I. V., Abid, M., Abid, M., Wu, H. C., Chen, Y., Coleman, J. N., Donegan, J. F., & Zhang, H. (2015). Nanopatterning and Electrical Tuning of MoS2 Layers with a Subnanometer Helium Ion Beam. Nano letters, 15(8), 5307-13. https://doi.org/10.1021/acs.nanolett.5b01673
Fox, Daniel S, et al. "Nanopatterning and Electrical Tuning of MoS2 Layers with a Subnanometer Helium Ion Beam." Nano letters vol. 15,8 (2015): 5307-13. doi: https://doi.org/10.1021/acs.nanolett.5b01673
Fox DS, Zhou Y, Maguire P, O'Neill A, Ó'Coileáin C, Gatensby R, Glushenkov AM, Tao T, Duesberg GS, Shvets IV, Abid M, Abid M, Wu HC, Chen Y, Coleman JN, Donegan JF, Zhang H. Nanopatterning and Electrical Tuning of MoS2 Layers with a Subnanometer Helium Ion Beam. Nano Lett. 2015 Aug 12;15(8):5307-13. doi: 10.1021/acs.nanolett.5b01673. Epub 2015 Jul 15. PMID: 26154305.
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Irreversible Electroporation for Prostate Cancer as Salvage Treatment Following Prior Radiation and Cryotherapy.

Reviews in urology

Murray KS, Akin O, Coleman JA.
PMID: 29472832
Rev Urol. 2017;19(4):268-272. doi: 10.3909/riu0755.

Salvage treatment options after localized primary treatment failure of prostate cancer are limited and associated with risk for serious complications. We report on the management details of a 57-year-old African American man treated with partial-gland ablation using irreversible electroporation...

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Murray KS, Akin O, Coleman JA. Irreversible Electroporation for Prostate Cancer as Salvage Treatment Following Prior Radiation and Cryotherapy. Rev Urol. 2017;19(4):268-272doi: 10.3909/riu0755.
Murray, K. S., Akin, O., & Coleman, J. A. (2017). Irreversible Electroporation for Prostate Cancer as Salvage Treatment Following Prior Radiation and Cryotherapy. Reviews in urology, 19(4), 268-272. https://doi.org/10.3909/riu0755
Murray, Katie S, et al. "Irreversible Electroporation for Prostate Cancer as Salvage Treatment Following Prior Radiation and Cryotherapy." Reviews in urology vol. 19,4 (2017): 268-272. doi: https://doi.org/10.3909/riu0755
Murray KS, Akin O, Coleman JA. Irreversible Electroporation for Prostate Cancer as Salvage Treatment Following Prior Radiation and Cryotherapy. Rev Urol. 2017;19(4):268-272. doi: 10.3909/riu0755. PMID: 29472832; PMCID: PMC5811886.
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Current contradictions in adolescent theory.

Journal of youth and adolescence

Coleman JC.
PMID: 24408718
J Youth Adolesc. 1978 Mar;7(1):1-11. doi: 10.1007/BF01538683.

This article points out two contradictions in current adolescent theory. The first is between the "classical" point of view, espousing the notion of "storm and stress," and the "empirical" view, supporting a concept of adolescence as relatively peaceful and...

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Coleman JC. Current contradictions in adolescent theory. J Youth Adolesc. 1978;7(1):1-11doi: 10.1007/BF01538683.
Coleman, J. C. (1978). Current contradictions in adolescent theory. Journal of youth and adolescence, 7(1), 1-11. https://doi.org/10.1007/BF01538683
Coleman, J C. "Current contradictions in adolescent theory." Journal of youth and adolescence vol. 7,1 (1978): 1-11. doi: https://doi.org/10.1007/BF01538683
Coleman JC. Current contradictions in adolescent theory. J Youth Adolesc. 1978 Mar;7(1):1-11. doi: 10.1007/BF01538683. PMID: 24408718.
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Sub-5 nm graphene nanopore fabrication by nitrogen ion etching induced by a low-energy electron beam.

Nanotechnology

Fox DS, Maguire P, Zhou Y, Rodenburg C, O'Neill A, Coleman JN, Zhang H.
PMID: 27040079
Nanotechnology. 2016 May 13;27(19):195302. doi: 10.1088/0957-4484/27/19/195302. Epub 2016 Apr 04.

A flexible and efficient method to fabricate nanopores in graphene has been developed. A focused, low-energy (5 keV) electron beam was used to locally activate etching of a graphene surface in a low pressure (0.3 Pa) N2 environment. Nanopores...

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Fox DS, Maguire P, Zhou Y, et al. Sub-5 nm graphene nanopore fabrication by nitrogen ion etching induced by a low-energy electron beam. Nanotechnology. 2016;27(19):195302doi: 10.1088/0957-4484/27/19/195302.
Fox, D. S., Maguire, P., Zhou, Y., Rodenburg, C., O'Neill, A., Coleman, J. N., & Zhang, H. (2016). Sub-5 nm graphene nanopore fabrication by nitrogen ion etching induced by a low-energy electron beam. Nanotechnology, 27(19), 195302. https://doi.org/10.1088/0957-4484/27/19/195302
Fox, Daniel S, et al. "Sub-5 nm graphene nanopore fabrication by nitrogen ion etching induced by a low-energy electron beam." Nanotechnology vol. 27,19 (2016): 195302. doi: https://doi.org/10.1088/0957-4484/27/19/195302
Fox DS, Maguire P, Zhou Y, Rodenburg C, O'Neill A, Coleman JN, Zhang H. Sub-5 nm graphene nanopore fabrication by nitrogen ion etching induced by a low-energy electron beam. Nanotechnology. 2016 May 13;27(19):195302. doi: 10.1088/0957-4484/27/19/195302. Epub 2016 Apr 04. PMID: 27040079.
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Therapeutic potential of GW501516 and the role of Peroxisome proliferator-activated receptor β/δ and B-cell lymphoma 6 in inflammatory signaling in human pancreatic cancer cells.

Biochemistry and biophysics reports

Smith RW, Coleman JD, Thompson JT, Vanden Heuvel JP.
PMID: 28955982
Biochem Biophys Rep. 2016 Nov 04;8:395-402. doi: 10.1016/j.bbrep.2016.10.014. eCollection 2016 Dec.

Peroxisome proliferator-activated receptor β/δ (PPARβ/δ) is a member of the nuclear receptor superfamily and a ligand-activated transcription factor that is involved in the regulation of the inflammatory response via activation of anti-inflammatory target genes and ligand-induced disassociation with the...

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Smith RW, Coleman JD, Thompson JT, et al. Therapeutic potential of GW501516 and the role of Peroxisome proliferator-activated receptor β/δ and B-cell lymphoma 6 in inflammatory signaling in human pancreatic cancer cells. Biochem Biophys Rep. 2016;8:395-402doi: 10.1016/j.bbrep.2016.10.014.
Smith, R. W., Coleman, J. D., Thompson, J. T., & Vanden Heuvel, J. P. (2016). Therapeutic potential of GW501516 and the role of Peroxisome proliferator-activated receptor β/δ and B-cell lymphoma 6 in inflammatory signaling in human pancreatic cancer cells. Biochemistry and biophysics reports, 8395-402. https://doi.org/10.1016/j.bbrep.2016.10.014
Smith, Russell W, et al. "Therapeutic potential of GW501516 and the role of Peroxisome proliferator-activated receptor β/δ and B-cell lymphoma 6 in inflammatory signaling in human pancreatic cancer cells." Biochemistry and biophysics reports vol. 8 (2016): 395-402. doi: https://doi.org/10.1016/j.bbrep.2016.10.014
Smith RW, Coleman JD, Thompson JT, Vanden Heuvel JP. Therapeutic potential of GW501516 and the role of Peroxisome proliferator-activated receptor β/δ and B-cell lymphoma 6 in inflammatory signaling in human pancreatic cancer cells. Biochem Biophys Rep. 2016 Nov 04;8:395-402. doi: 10.1016/j.bbrep.2016.10.014. eCollection 2016 Dec. PMID: 28955982; PMCID: PMC5614479.
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Nitrogen availability alters patterns of accumulation of heat stress-induced proteins in plants.

Oecologia

Heckathorn SA, Poeller GJ, Coleman JS, Hallberg RL.
PMID: 28307115
Oecologia. 1996 Feb;105(3):413-418. doi: 10.1007/BF00328745.

Mounting evidence suggests that heat-shock proteins (HSPs) play a vital role in enhancing survival at high temperature. There is, however, considerable variation in patterns of HSP production among species, and even among and within individuals of a species. It...

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Heckathorn SA, Poeller GJ, Coleman JS, et al. Nitrogen availability alters patterns of accumulation of heat stress-induced proteins in plants. Oecologia. 1996;105(3):413-418doi: 10.1007/BF00328745.
Heckathorn, S. A., Poeller, G. J., Coleman, J. S., & Hallberg, R. L. (1996). Nitrogen availability alters patterns of accumulation of heat stress-induced proteins in plants. Oecologia, 105(3), 413-418. https://doi.org/10.1007/BF00328745
Heckathorn, Scott A, et al. "Nitrogen availability alters patterns of accumulation of heat stress-induced proteins in plants." Oecologia vol. 105,3 (1996): 413-418. doi: https://doi.org/10.1007/BF00328745
Heckathorn SA, Poeller GJ, Coleman JS, Hallberg RL. Nitrogen availability alters patterns of accumulation of heat stress-induced proteins in plants. Oecologia. 1996 Feb;105(3):413-418. doi: 10.1007/BF00328745. PMID: 28307115.
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IntravenousCorticosteroid Use Is Associated With Reduced Early Recurrence of Atrial Fibrillation Immediately Following Radiofrequency Catheter Ablation.

Journal of atrial fibrillation

Sood NA, Krishnan GM, Coleman CI, Kluger J, Anglade M, Clyne CA.
PMID: 28496700
J Atr Fibrillation. 2011 Sep 30;4(3):349. doi: 10.4022/jafib.349. eCollection 2011.

No abstract available.

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Sood NA, Krishnan GM, Coleman CI, et al. IntravenousCorticosteroid Use Is Associated With Reduced Early Recurrence of Atrial Fibrillation Immediately Following Radiofrequency Catheter Ablation. J Atr Fibrillation. 2011;4(3):349doi: 10.4022/jafib.349.
Sood, N. A., Krishnan, G. M., Coleman, C. I., Kluger, J., Anglade, M., & Clyne, C. A. (2011). IntravenousCorticosteroid Use Is Associated With Reduced Early Recurrence of Atrial Fibrillation Immediately Following Radiofrequency Catheter Ablation. Journal of atrial fibrillation, 4(3), 349. https://doi.org/10.4022/jafib.349
Sood, Nitesh A, et al. "IntravenousCorticosteroid Use Is Associated With Reduced Early Recurrence of Atrial Fibrillation Immediately Following Radiofrequency Catheter Ablation." Journal of atrial fibrillation vol. 4,3 (2011): 349. doi: https://doi.org/10.4022/jafib.349
Sood NA, Krishnan GM, Coleman CI, Kluger J, Anglade M, Clyne CA. IntravenousCorticosteroid Use Is Associated With Reduced Early Recurrence of Atrial Fibrillation Immediately Following Radiofrequency Catheter Ablation. J Atr Fibrillation. 2011 Sep 30;4(3):349. doi: 10.4022/jafib.349. eCollection 2011. PMID: 28496700; PMCID: PMC5153015.
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Rapid Knockout and Reporter Mouse Line Generation and Breeding Colony Establishment Using EUCOMM Conditional-Ready Embryonic Stem Cells: A Case Study.

Frontiers in endocrinology

Coleman JL, Brennan K, Ngo T, Balaji P, Graham RM, Smith NJ.
PMID: 26175717
Front Endocrinol (Lausanne). 2015 Jun 30;6:105. doi: 10.3389/fendo.2015.00105. eCollection 2015.

As little as a decade ago, generation of a single knockout mouse line was an expensive and time-consuming undertaking available to relatively few researchers. The International Knockout Mouse Consortium, established in 2007, has revolutionized the use of such models...

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Coleman JL, Brennan K, Ngo T, et al. Rapid Knockout and Reporter Mouse Line Generation and Breeding Colony Establishment Using EUCOMM Conditional-Ready Embryonic Stem Cells: A Case Study. Front Endocrinol (Lausanne). 2015;6:105doi: 10.3389/fendo.2015.00105.
Coleman, J. L., Brennan, K., Ngo, T., Balaji, P., Graham, R. M., & Smith, N. J. (2015). Rapid Knockout and Reporter Mouse Line Generation and Breeding Colony Establishment Using EUCOMM Conditional-Ready Embryonic Stem Cells: A Case Study. Frontiers in endocrinology, 6105. https://doi.org/10.3389/fendo.2015.00105
Coleman, James L J, et al. "Rapid Knockout and Reporter Mouse Line Generation and Breeding Colony Establishment Using EUCOMM Conditional-Ready Embryonic Stem Cells: A Case Study." Frontiers in endocrinology vol. 6 (2015): 105. doi: https://doi.org/10.3389/fendo.2015.00105
Coleman JL, Brennan K, Ngo T, Balaji P, Graham RM, Smith NJ. Rapid Knockout and Reporter Mouse Line Generation and Breeding Colony Establishment Using EUCOMM Conditional-Ready Embryonic Stem Cells: A Case Study. Front Endocrinol (Lausanne). 2015 Jun 30;6:105. doi: 10.3389/fendo.2015.00105. eCollection 2015. PMID: 26175717; PMCID: PMC4485191.
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Showing 1 to 12 of 513 entries