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Erratum to: Conversion of Uric Acid into Ammonium in Oil-Degrading Marine Microbial Communities: a Possible Role of Halomonads.

Microbial ecology

Gertler C, Bargiela R, Mapelli F, Han X, Chen J, Hai T, Amer RA, Mahjoubi M, Malkawi H, Magagnini M, Cherif A, Abdel-Fattah YR, Kalogerakis N, Daffonchio D, Ferrer M, Golyshin PN.
PMID: 26066513
Microb Ecol. 2015 Nov;70(4):1034. doi: 10.1007/s00248-015-0631-6.

No abstract available.

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Gertler C, Bargiela R, Mapelli F, et al. Erratum to: Conversion of Uric Acid into Ammonium in Oil-Degrading Marine Microbial Communities: a Possible Role of Halomonads. Microb Ecol. 2015;70(4):1034doi: 10.1007/s00248-015-0631-6.
Gertler, C., Bargiela, R., Mapelli, F., Han, X., Chen, J., Hai, T., Amer, R. A., Mahjoubi, M., Malkawi, H., Magagnini, M., Cherif, A., Abdel-Fattah, Y. R., Kalogerakis, N., Daffonchio, D., Ferrer, M., & Golyshin, P. N. (2015). Erratum to: Conversion of Uric Acid into Ammonium in Oil-Degrading Marine Microbial Communities: a Possible Role of Halomonads. Microbial ecology, 70(4), 1034. https://doi.org/10.1007/s00248-015-0631-6
Gertler, Christoph, et al. "Erratum to: Conversion of Uric Acid into Ammonium in Oil-Degrading Marine Microbial Communities: a Possible Role of Halomonads." Microbial ecology vol. 70,4 (2015): 1034. doi: https://doi.org/10.1007/s00248-015-0631-6
Gertler C, Bargiela R, Mapelli F, Han X, Chen J, Hai T, Amer RA, Mahjoubi M, Malkawi H, Magagnini M, Cherif A, Abdel-Fattah YR, Kalogerakis N, Daffonchio D, Ferrer M, Golyshin PN. Erratum to: Conversion of Uric Acid into Ammonium in Oil-Degrading Marine Microbial Communities: a Possible Role of Halomonads. Microb Ecol. 2015 Nov;70(4):1034. doi: 10.1007/s00248-015-0631-6. PMID: 26066513.
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Contact angle measurement and cell hydrophobicity of granular sludge from upflow anaerobic sludge bed reactors.

Applied and environmental microbiology

Daffonchio D, Thaveesri J, Verstraete W.
PMID: 16535148
Appl Environ Microbiol. 1995 Oct;61(10):3676-80. doi: 10.1128/aem.61.10.3676-3680.1995.

The contact angle, which is generally used to evaluate the hydrophobicities of pure bacterial strains and solid surfaces, was used to study mixed cell cultures of bacteria involved in anaerobic digestion. Previously published data and data from this study...

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Daffonchio D, Thaveesri J, Verstraete W. Contact angle measurement and cell hydrophobicity of granular sludge from upflow anaerobic sludge bed reactors. Appl Environ Microbiol. 1995;61(10):3676-80doi: 10.1128/aem.61.10.3676-3680.1995.
Daffonchio, D., Thaveesri, J., & Verstraete, W. (1995). Contact angle measurement and cell hydrophobicity of granular sludge from upflow anaerobic sludge bed reactors. Applied and environmental microbiology, 61(10), 3676-80. https://doi.org/10.1128/aem.61.10.3676-3680.1995
Daffonchio, D, et al. "Contact angle measurement and cell hydrophobicity of granular sludge from upflow anaerobic sludge bed reactors." Applied and environmental microbiology vol. 61,10 (1995): 3676-80. doi: https://doi.org/10.1128/aem.61.10.3676-3680.1995
Daffonchio D, Thaveesri J, Verstraete W. Contact angle measurement and cell hydrophobicity of granular sludge from upflow anaerobic sludge bed reactors. Appl Environ Microbiol. 1995 Oct;61(10):3676-80. doi: 10.1128/aem.61.10.3676-3680.1995. PMID: 16535148; PMCID: PMC1388710.
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Sex and stripping: The key to the intimate relationship between Wolbachia and host?.

Communicative & integrative biology

Negri I, Pellecchia M, Grève P, Daffonchio D, Bandi C, Alma A.
PMID: 20585501
Commun Integr Biol. 2010 Mar;3(2):110-5. doi: 10.4161/cib.3.2.10520.

Wolbachia pipientis is known to infect only arthropods and nematodes (mainly filarial worms). A unique feature shared by the two Phyla is the ability to replace the exoskeleton, a process known as ecdysis. This shared characteristic is thought to...

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Negri I, Pellecchia M, Grève P, et al. Sex and stripping: The key to the intimate relationship between Wolbachia and host?. Commun Integr Biol. 2010;3(2):110-5doi: 10.4161/cib.3.2.10520.
Negri, I., Pellecchia, M., Grève, P., Daffonchio, D., Bandi, C., & Alma, A. (2010). Sex and stripping: The key to the intimate relationship between Wolbachia and host?. Communicative & integrative biology, 3(2), 110-5. https://doi.org/10.4161/cib.3.2.10520
Negri, Ilaria, et al. "Sex and stripping: The key to the intimate relationship between Wolbachia and host?." Communicative & integrative biology vol. 3,2 (2010): 110-5. doi: https://doi.org/10.4161/cib.3.2.10520
Negri I, Pellecchia M, Grève P, Daffonchio D, Bandi C, Alma A. Sex and stripping: The key to the intimate relationship between Wolbachia and host?. Commun Integr Biol. 2010 Mar;3(2):110-5. doi: 10.4161/cib.3.2.10520. PMID: 20585501; PMCID: PMC2889965.
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DNA is preserved and maintains transforming potential after contact with brines of the deep anoxic hypersaline lakes of the Eastern Mediterranean Sea.

Saline systems

Borin S, Crotti E, Mapelli F, Tamagnini I, Corselli C, Daffonchio D.
PMID: 18681968
Saline Syst. 2008 Aug 05;4:10. doi: 10.1186/1746-1448-4-10.

BACKGROUND: Extracellular dissolved DNA has been demonstrated to be present in many terrestrial and aquatic environments, actively secreted, or released by decaying cells. Free DNA has the genetic potential to be acquired by living competent cells by horizontal gene...

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Borin S, Crotti E, Mapelli F, et al. DNA is preserved and maintains transforming potential after contact with brines of the deep anoxic hypersaline lakes of the Eastern Mediterranean Sea. Saline Syst. 2008;4:10doi: 10.1186/1746-1448-4-10.
Borin, S., Crotti, E., Mapelli, F., Tamagnini, I., Corselli, C., & Daffonchio, D. (2008). DNA is preserved and maintains transforming potential after contact with brines of the deep anoxic hypersaline lakes of the Eastern Mediterranean Sea. Saline systems, 410. https://doi.org/10.1186/1746-1448-4-10
Borin, Sara, et al. "DNA is preserved and maintains transforming potential after contact with brines of the deep anoxic hypersaline lakes of the Eastern Mediterranean Sea." Saline systems vol. 4 (2008): 10. doi: https://doi.org/10.1186/1746-1448-4-10
Borin S, Crotti E, Mapelli F, Tamagnini I, Corselli C, Daffonchio D. DNA is preserved and maintains transforming potential after contact with brines of the deep anoxic hypersaline lakes of the Eastern Mediterranean Sea. Saline Syst. 2008 Aug 05;4:10. doi: 10.1186/1746-1448-4-10. PMID: 18681968; PMCID: PMC2531117.
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Draft Genome of Klebsiella pneumoniae Sequence Type 512, a Multidrug-Resistant Strain Isolated during a Recent KPC Outbreak in Italy.

Genome announcements

Comandatore F, Gaibani P, Ambretti S, Landini MP, Daffonchio D, Marone P, Sambri V, Bandi C, Sassera D.
PMID: 23405316
Genome Announc. 2013 Jan;1(1). doi: 10.1128/genomeA.00035-12. Epub 2013 Jan 15.

Here, we present the draft genome sequence of Klebsiella pneumoniae subsp. pneumoniae sequence type 512 (ST512) isolated during a KPC-producer outbreak. This strain is resistant to β-lactams, cephalosporins, fluoroquinolones, aminoglycosides, macrolides, tetracyclines, and carbapenems but susceptible to colistin. The...

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Comandatore F, Gaibani P, Ambretti S, et al. Draft Genome of Klebsiella pneumoniae Sequence Type 512, a Multidrug-Resistant Strain Isolated during a Recent KPC Outbreak in Italy. Genome Announc. 2013;1(1)doi: 10.1128/genomeA.00035-12.
Comandatore, F., Gaibani, P., Ambretti, S., Landini, M. P., Daffonchio, D., Marone, P., Sambri, V., Bandi, C., & Sassera, D. (2013). Draft Genome of Klebsiella pneumoniae Sequence Type 512, a Multidrug-Resistant Strain Isolated during a Recent KPC Outbreak in Italy. Genome announcements, 1(1), . https://doi.org/10.1128/genomeA.00035-12
Comandatore, Francesco, et al. "Draft Genome of Klebsiella pneumoniae Sequence Type 512, a Multidrug-Resistant Strain Isolated during a Recent KPC Outbreak in Italy." Genome announcements vol. 1,1 (2013). doi: https://doi.org/10.1128/genomeA.00035-12
Comandatore F, Gaibani P, Ambretti S, Landini MP, Daffonchio D, Marone P, Sambri V, Bandi C, Sassera D. Draft Genome of Klebsiella pneumoniae Sequence Type 512, a Multidrug-Resistant Strain Isolated during a Recent KPC Outbreak in Italy. Genome Announc. 2013 Jan;1(1). doi: 10.1128/genomeA.00035-12. Epub 2013 Jan 15. PMID: 23405316; PMCID: PMC3569305.
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Bacteria Associated to Plants Naturally Selected in a Historical PCB Polluted Soil Show Potential to Sustain Natural Attenuation.

Frontiers in microbiology

Vergani L, Mapelli F, Marasco R, Crotti E, Fusi M, Di Guardo A, Armiraglio S, Daffonchio D, Borin S.
PMID: 28790991
Front Microbiol. 2017 Jul 25;8:1385. doi: 10.3389/fmicb.2017.01385. eCollection 2017.

The exploitation of the association between plants and microorganisms is a promising approach able to boost natural attenuation processes for soil clean-up in vast polluted areas characterized by mixed chemical contamination. We aimed to explore the selection of root-associated...

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Vergani L, Mapelli F, Marasco R, et al. Bacteria Associated to Plants Naturally Selected in a Historical PCB Polluted Soil Show Potential to Sustain Natural Attenuation. Front Microbiol. 2017;8:1385doi: 10.3389/fmicb.2017.01385.
Vergani, L., Mapelli, F., Marasco, R., Crotti, E., Fusi, M., Di Guardo, A., Armiraglio, S., Daffonchio, D., & Borin, S. (2017). Bacteria Associated to Plants Naturally Selected in a Historical PCB Polluted Soil Show Potential to Sustain Natural Attenuation. Frontiers in microbiology, 81385. https://doi.org/10.3389/fmicb.2017.01385
Vergani, Lorenzo, et al. "Bacteria Associated to Plants Naturally Selected in a Historical PCB Polluted Soil Show Potential to Sustain Natural Attenuation." Frontiers in microbiology vol. 8 (2017): 1385. doi: https://doi.org/10.3389/fmicb.2017.01385
Vergani L, Mapelli F, Marasco R, Crotti E, Fusi M, Di Guardo A, Armiraglio S, Daffonchio D, Borin S. Bacteria Associated to Plants Naturally Selected in a Historical PCB Polluted Soil Show Potential to Sustain Natural Attenuation. Front Microbiol. 2017 Jul 25;8:1385. doi: 10.3389/fmicb.2017.01385. eCollection 2017. PMID: 28790991; PMCID: PMC5524726.
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Root bacterial endophytes confer drought resistance and enhance expression and activity of a vacuolar H.

Environmental microbiology

Vigani G, Rolli E, Marasco R, Dell'Orto M, Michoud G, Soussi A, Raddadi N, Borin S, Sorlini C, Zocchi G, Daffonchio D.
PMID: 29786171
Environ Microbiol. 2018 May 22; doi: 10.1111/1462-2920.14272. Epub 2018 May 22.

It has been previously shown that the transgenic overexpression of the plant root vacuolar proton pumps H

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Vigani G, Rolli E, Marasco R, et al. Root bacterial endophytes confer drought resistance and enhance expression and activity of a vacuolar H. Environ Microbiol. 2018;doi: 10.1111/1462-2920.14272.
Vigani, G., Rolli, E., Marasco, R., Dell'Orto, M., Michoud, G., Soussi, A., Raddadi, N., Borin, S., Sorlini, C., Zocchi, G., & Daffonchio, D. (2018). Root bacterial endophytes confer drought resistance and enhance expression and activity of a vacuolar H. Environmental microbiology, . https://doi.org/10.1111/1462-2920.14272
Vigani, Gianpiero, et al. "Root bacterial endophytes confer drought resistance and enhance expression and activity of a vacuolar H." Environmental microbiology vol. (2018). doi: https://doi.org/10.1111/1462-2920.14272
Vigani G, Rolli E, Marasco R, Dell'Orto M, Michoud G, Soussi A, Raddadi N, Borin S, Sorlini C, Zocchi G, Daffonchio D. Root bacterial endophytes confer drought resistance and enhance expression and activity of a vacuolar H. Environ Microbiol. 2018 May 22; doi: 10.1111/1462-2920.14272. Epub 2018 May 22. PMID: 29786171.
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Consent insufficient for data release-Response.

Science (New York, N.Y.)

Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, Hallam SJ, Hugenholtz P, Ioannidis JPA, Jansson JK, Kim JF, Klenk HP, Klotz MG, Knight R, Konstantinidis KT, Kyrpides NC, Mason CE, McHardy AC, Meyer F, Ouzounis CA, Patrinos AAN, Podar M, Pollard KS, Ravel J, Muñoz AR, Roberts RJ, Rosselló-Móra R, Sansone SA, Schloss PD, Schriml LM, Setubal JC, Sorek R, Stevens RL, Tiedje JM, Turjanski A, Tyson GW, Ussery DW, Weinstock GM, White O, Whitman WB, Xenarios I.
PMID: 31048484
Science. 2019 May 03;364(6439):446. doi: 10.1126/science.aax7509.

No abstract available.

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Amann RI, Baichoo S, Blencowe BJ, et al. Consent insufficient for data release-Response. Science. 2019;364(6439):446doi: 10.1126/science.aax7509.
Amann, R. I., Baichoo, S., Blencowe, B. J., Bork, P., Borodovsky, M., Brooksbank, C., Chain, P. S. G., Colwell, R. R., Daffonchio, D. G., Danchin, A., de Lorenzo, V., Dorrestein, P. C., Finn, R. D., Fraser, C. M., Gilbert, J. A., Hallam, S. J., Hugenholtz, P., Ioannidis, J. P. A., Jansson, J. K., Kim, J. F., Klenk, H. P., Klotz, M. G., Knight, R., Konstantinidis, K. T., Kyrpides, N. C., Mason, C. E., McHardy, A. C., Meyer, F., Ouzounis, C. A., Patrinos, A. A. N., Podar, M., Pollard, K. S., Ravel, J., Muñoz, A. R., Roberts, R. J., Rosselló-Móra, R., Sansone, S. A., Schloss, P. D., Schriml, L. M., Setubal, J. C., Sorek, R., Stevens, R. L., Tiedje, J. M., Turjanski, A., Tyson, G. W., Ussery, D. W., Weinstock, G. M., White, O., Whitman, W. B., & Xenarios, I. (2019). Consent insufficient for data release-Response. Science (New York, N.Y.), 364(6439), 446. https://doi.org/10.1126/science.aax7509
Amann, Rudolf I, et al. "Consent insufficient for data release-Response." Science (New York, N.Y.) vol. 364,6439 (2019): 446. doi: https://doi.org/10.1126/science.aax7509
Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, Hallam SJ, Hugenholtz P, Ioannidis JPA, Jansson JK, Kim JF, Klenk HP, Klotz MG, Knight R, Konstantinidis KT, Kyrpides NC, Mason CE, McHardy AC, Meyer F, Ouzounis CA, Patrinos AAN, Podar M, Pollard KS, Ravel J, Muñoz AR, Roberts RJ, Rosselló-Móra R, Sansone SA, Schloss PD, Schriml LM, Setubal JC, Sorek R, Stevens RL, Tiedje JM, Turjanski A, Tyson GW, Ussery DW, Weinstock GM, White O, Whitman WB, Xenarios I. Consent insufficient for data release-Response. Science. 2019 May 03;364(6439):446. doi: 10.1126/science.aax7509. PMID: 31048484.
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Phenomics and Genomics Reveal Adaptation of .

Frontiers in microbiology

Zeaiter Z, Marasco R, Booth JM, Prosdocimi EM, Mapelli F, Callegari M, Fusi M, Michoud G, Molinari F, Daffonchio D, Borin S, Crotti E.
PMID: 31244812
Front Microbiol. 2019 Jun 12;10:1304. doi: 10.3389/fmicb.2019.01304. eCollection 2019.

The adaptation of sporeformers to extreme environmental conditions is frequently questioned due to their capacity to produce highly resistant endospores that are considered as resting contaminants, not representing populations adapted to the system. In this work, in order to...

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Zeaiter Z, Marasco R, Booth JM, et al. Phenomics and Genomics Reveal Adaptation of . Front Microbiol. 2019;10:1304doi: 10.3389/fmicb.2019.01304.
Zeaiter, Z., Marasco, R., Booth, J. M., Prosdocimi, E. M., Mapelli, F., Callegari, M., Fusi, M., Michoud, G., Molinari, F., Daffonchio, D., Borin, S., & Crotti, E. (2019). Phenomics and Genomics Reveal Adaptation of . Frontiers in microbiology, 101304. https://doi.org/10.3389/fmicb.2019.01304
Zeaiter, Zahraa, et al. "Phenomics and Genomics Reveal Adaptation of ." Frontiers in microbiology vol. 10 (2019): 1304. doi: https://doi.org/10.3389/fmicb.2019.01304
Zeaiter Z, Marasco R, Booth JM, Prosdocimi EM, Mapelli F, Callegari M, Fusi M, Michoud G, Molinari F, Daffonchio D, Borin S, Crotti E. Phenomics and Genomics Reveal Adaptation of . Front Microbiol. 2019 Jun 12;10:1304. doi: 10.3389/fmicb.2019.01304. eCollection 2019. PMID: 31244812; PMCID: PMC6581673.
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Aridity modulates belowground bacterial community dynamics in olive tree.

Environmental microbiology

Marasco R, Fusi M, Rolli E, Ettoumi B, Tambone F, Borin S, Ouzari HI, Boudabous A, Sorlini C, Cherif A, Adani F, Daffonchio D.
PMID: 34490977
Environ Microbiol. 2021 Oct;23(10):6275-6291. doi: 10.1111/1462-2920.15764. Epub 2021 Sep 24.

Aridity negatively affects the diversity and abundance of edaphic microbial communities and their multiple ecosystem services, ultimately impacting vegetation productivity and biotic interactions. Investigation about how plant-associated microbial communities respond to increasing aridity is of particular importance, especially in...

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Marasco R, Fusi M, Rolli E, et al. Aridity modulates belowground bacterial community dynamics in olive tree. Environ Microbiol. 2021;23(10):6275-6291doi: 10.1111/1462-2920.15764.
Marasco, R., Fusi, M., Rolli, E., Ettoumi, B., Tambone, F., Borin, S., Ouzari, H. I., Boudabous, A., Sorlini, C., Cherif, A., Adani, F., & Daffonchio, D. (2021). Aridity modulates belowground bacterial community dynamics in olive tree. Environmental microbiology, 23(10), 6275-6291. https://doi.org/10.1111/1462-2920.15764
Marasco, Ramona, et al. "Aridity modulates belowground bacterial community dynamics in olive tree." Environmental microbiology vol. 23,10 (2021): 6275-6291. doi: https://doi.org/10.1111/1462-2920.15764
Marasco R, Fusi M, Rolli E, Ettoumi B, Tambone F, Borin S, Ouzari HI, Boudabous A, Sorlini C, Cherif A, Adani F, Daffonchio D. Aridity modulates belowground bacterial community dynamics in olive tree. Environ Microbiol. 2021 Oct;23(10):6275-6291. doi: 10.1111/1462-2920.15764. Epub 2021 Sep 24. PMID: 34490977.
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The Impact of the Inoculation of Phosphate-Solubilizing Bacteria .

Microorganisms

Saadouli I, Mosbah A, Ferjani R, Stathopoulou P, Galiatsatos I, Asimakis E, Marasco R, Daffonchio D, Tsiamis G, Ouzari HI.
PMID: 34442740
Microorganisms. 2021 Aug 04;9(8). doi: 10.3390/microorganisms9081661.

The bacterial genus

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Saadouli I, Mosbah A, Ferjani R, et al. The Impact of the Inoculation of Phosphate-Solubilizing Bacteria . Microorganisms. 2021;9(8)doi: 10.3390/microorganisms9081661.
Saadouli, I., Mosbah, A., Ferjani, R., Stathopoulou, P., Galiatsatos, I., Asimakis, E., Marasco, R., Daffonchio, D., Tsiamis, G., & Ouzari, H. I. (2021). The Impact of the Inoculation of Phosphate-Solubilizing Bacteria . Microorganisms, 9(8), . https://doi.org/10.3390/microorganisms9081661
Saadouli, Ilhem, et al. "The Impact of the Inoculation of Phosphate-Solubilizing Bacteria ." Microorganisms vol. 9,8 (2021). doi: https://doi.org/10.3390/microorganisms9081661
Saadouli I, Mosbah A, Ferjani R, Stathopoulou P, Galiatsatos I, Asimakis E, Marasco R, Daffonchio D, Tsiamis G, Ouzari HI. The Impact of the Inoculation of Phosphate-Solubilizing Bacteria . Microorganisms. 2021 Aug 04;9(8). doi: 10.3390/microorganisms9081661. PMID: 34442740; PMCID: PMC8400695.
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Enrichment of .

Frontiers in microbiology

Alqahtani MF, Bajracharya S, Katuri KP, Ali M, Ragab A, Michoud G, Daffonchio D, Saikaly PE.
PMID: 31787955
Front Microbiol. 2019 Nov 07;10:2563. doi: 10.3389/fmicb.2019.02563. eCollection 2019.

Homoacetogens are efficient CO

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Alqahtani MF, Bajracharya S, Katuri KP, et al. Enrichment of . Front Microbiol. 2019;10:2563doi: 10.3389/fmicb.2019.02563.
Alqahtani, M. F., Bajracharya, S., Katuri, K. P., Ali, M., Ragab, A., Michoud, G., Daffonchio, D., & Saikaly, P. E. (2019). Enrichment of . Frontiers in microbiology, 102563. https://doi.org/10.3389/fmicb.2019.02563
Alqahtani, Manal F, et al. "Enrichment of ." Frontiers in microbiology vol. 10 (2019): 2563. doi: https://doi.org/10.3389/fmicb.2019.02563
Alqahtani MF, Bajracharya S, Katuri KP, Ali M, Ragab A, Michoud G, Daffonchio D, Saikaly PE. Enrichment of . Front Microbiol. 2019 Nov 07;10:2563. doi: 10.3389/fmicb.2019.02563. eCollection 2019. PMID: 31787955; PMCID: PMC6855130.
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