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Detecting and Characterizing Pleiotropy: New Methods for Uncovering the Connection Between the Complexity of Genomic Architecture and Multiple phenotypes.

Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing

Tyler AL, Crawford DC, Pendergrass SA.
PMID: 25072629
Pac Symp Biocomput. 2014 Jan;183-187. doi: 10.1142/9789814583220_0018.

No abstract available.

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Tyler AL, Crawford DC, Pendergrass SA. Detecting and Characterizing Pleiotropy: New Methods for Uncovering the Connection Between the Complexity of Genomic Architecture and Multiple phenotypes. Pac Symp Biocomput. 2014;183-187doi: 10.1142/9789814583220_0018.
Tyler, A. L., Crawford, D. C., & Pendergrass, S. A. (2014). Detecting and Characterizing Pleiotropy: New Methods for Uncovering the Connection Between the Complexity of Genomic Architecture and Multiple phenotypes. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 183-187. https://doi.org/10.1142/9789814583220_0018
Tyler, Anna L, et al. "Detecting and Characterizing Pleiotropy: New Methods for Uncovering the Connection Between the Complexity of Genomic Architecture and Multiple phenotypes." Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing vol. (2014): 183-187. doi: https://doi.org/10.1142/9789814583220_0018
Tyler AL, Crawford DC, Pendergrass SA. Detecting and Characterizing Pleiotropy: New Methods for Uncovering the Connection Between the Complexity of Genomic Architecture and Multiple phenotypes. Pac Symp Biocomput. 2014 Jan;183-187. doi: 10.1142/9789814583220_0018. PMID: 25072629; PMCID: PMC4108263.
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Molecular Design for Tuning Work Functions of Transparent Conducting Electrodes.

The journal of physical chemistry letters

Koldemir U, Braid JL, Morgenstern A, Eberhart M, Collins RT, Olson DC, Sellinger A.
PMID: 26266603
J Phys Chem Lett. 2015 Jun 18;6(12):2269-76. doi: 10.1021/acs.jpclett.5b00420. Epub 2015 Jun 04.

In this Perspective, we provide a brief background on the use of aromatic phosphonic acid modifiers for tuning work functions of transparent conducting oxides, for example, zinc oxide (ZnO) and indium tin oxide (ITO). We then introduce our preliminary...

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Koldemir U, Braid JL, Morgenstern A, et al. Molecular Design for Tuning Work Functions of Transparent Conducting Electrodes. J Phys Chem Lett. 2015;6(12):2269-76doi: 10.1021/acs.jpclett.5b00420.
Koldemir, U., Braid, J. L., Morgenstern, A., Eberhart, M., Collins, R. T., Olson, D. C., & Sellinger, A. (2015). Molecular Design for Tuning Work Functions of Transparent Conducting Electrodes. The journal of physical chemistry letters, 6(12), 2269-76. https://doi.org/10.1021/acs.jpclett.5b00420
Koldemir, Unsal, et al. "Molecular Design for Tuning Work Functions of Transparent Conducting Electrodes." The journal of physical chemistry letters vol. 6,12 (2015): 2269-76. doi: https://doi.org/10.1021/acs.jpclett.5b00420
Koldemir U, Braid JL, Morgenstern A, Eberhart M, Collins RT, Olson DC, Sellinger A. Molecular Design for Tuning Work Functions of Transparent Conducting Electrodes. J Phys Chem Lett. 2015 Jun 18;6(12):2269-76. doi: 10.1021/acs.jpclett.5b00420. Epub 2015 Jun 04. PMID: 26266603.
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Total Kidney Volume Is a Prognostic Biomarker of Renal Function Decline and Progression to End-Stage Renal Disease in Patients With Autosomal Dominant Polycystic Kidney Disease.

Kidney international reports

Perrone RD, Mouksassi MS, Romero K, Czerwiec FS, Chapman AB, Gitomer BY, Torres VE, Miskulin DC, Broadbent S, Marier JF.
PMID: 29142971
Kidney Int Rep. 2017 Jan 16;2(3):442-450. doi: 10.1016/j.ekir.2017.01.003. eCollection 2017 May.

INTRODUCTION: Autosomal dominant polycystic kidney disease is the most common hereditary kidney disease. TKV is a promising imaging biomarker for tracking and predicting the natural history of autosomal dominant polycystic kidney disease. The prognostic value of TKV was evaluated,...

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Perrone RD, Mouksassi MS, Romero K, et al. Total Kidney Volume Is a Prognostic Biomarker of Renal Function Decline and Progression to End-Stage Renal Disease in Patients With Autosomal Dominant Polycystic Kidney Disease. Kidney Int Rep. 2017;2(3):442-450doi: 10.1016/j.ekir.2017.01.003.
Perrone, R. D., Mouksassi, M. S., Romero, K., Czerwiec, F. S., Chapman, A. B., Gitomer, B. Y., Torres, V. E., Miskulin, D. C., Broadbent, S., & Marier, J. F. (2017). Total Kidney Volume Is a Prognostic Biomarker of Renal Function Decline and Progression to End-Stage Renal Disease in Patients With Autosomal Dominant Polycystic Kidney Disease. Kidney international reports, 2(3), 442-450. https://doi.org/10.1016/j.ekir.2017.01.003
Perrone, Ronald D, et al. "Total Kidney Volume Is a Prognostic Biomarker of Renal Function Decline and Progression to End-Stage Renal Disease in Patients With Autosomal Dominant Polycystic Kidney Disease." Kidney international reports vol. 2,3 (2017): 442-450. doi: https://doi.org/10.1016/j.ekir.2017.01.003
Perrone RD, Mouksassi MS, Romero K, Czerwiec FS, Chapman AB, Gitomer BY, Torres VE, Miskulin DC, Broadbent S, Marier JF. Total Kidney Volume Is a Prognostic Biomarker of Renal Function Decline and Progression to End-Stage Renal Disease in Patients With Autosomal Dominant Polycystic Kidney Disease. Kidney Int Rep. 2017 Jan 16;2(3):442-450. doi: 10.1016/j.ekir.2017.01.003. eCollection 2017 May. PMID: 29142971; PMCID: PMC5678856.
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Downregulation of O-linked N-acetylglucosamine transferase by RNA interference decreases MMP9 expression in human esophageal cancer cells.

Oncology letters

Qiao Z, Dang C, Zhou B, Li S, Zhang W, Jiang J, Zhang J, Ma Y, Kong R, Ma Z.
PMID: 27123109
Oncol Lett. 2016 May;11(5):3317-3323. doi: 10.3892/ol.2016.4428. Epub 2016 Apr 07.

O-linked N-acetylglucosamine transferase (OGT) catalyzes O-linked glycosylation (O-GlcNAcylation). O-GlcNAcylation is a post-translational carbohydrate modification of diverse nuclear and cytosolic proteins by the addition of O-linked β-N-acetylglucosamine. It was recently demonstrated that OGT and the level of O-GlcNAcylation are upregulated...

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Qiao Z, Dang C, Zhou B, et al. Downregulation of O-linked N-acetylglucosamine transferase by RNA interference decreases MMP9 expression in human esophageal cancer cells. Oncol Lett. 2016;11(5):3317-3323doi: 10.3892/ol.2016.4428.
Qiao, Z., Dang, C., Zhou, B., Li, S., Zhang, W., Jiang, J., Zhang, J., Ma, Y., Kong, R., & Ma, Z. (2016). Downregulation of O-linked N-acetylglucosamine transferase by RNA interference decreases MMP9 expression in human esophageal cancer cells. Oncology letters, 11(5), 3317-3323. https://doi.org/10.3892/ol.2016.4428
Qiao, Zhe, et al. "Downregulation of O-linked N-acetylglucosamine transferase by RNA interference decreases MMP9 expression in human esophageal cancer cells." Oncology letters vol. 11,5 (2016): 3317-3323. doi: https://doi.org/10.3892/ol.2016.4428
Qiao Z, Dang C, Zhou B, Li S, Zhang W, Jiang J, Zhang J, Ma Y, Kong R, Ma Z. Downregulation of O-linked N-acetylglucosamine transferase by RNA interference decreases MMP9 expression in human esophageal cancer cells. Oncol Lett. 2016 May;11(5):3317-3323. doi: 10.3892/ol.2016.4428. Epub 2016 Apr 07. PMID: 27123109; PMCID: PMC4840913.
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Multi-frequency near-field scanning optical microscopy.

Nanotechnology

Kohlgraf-Owens DC, Greusard L, Sukhov S, Wilde YD, Dogariu A.
PMID: 24346240
Nanotechnology. 2014 Jan 24;25(3):035203. doi: 10.1088/0957-4484/25/3/035203. Epub 2013 Dec 17.

We demonstrate a new multi-frequency approach for mapping near-field optically induced forces with subwavelength spatial resolution. The concept relies on oscillating a scanning probe at two different frequencies. Oscillations at one frequency are driven electrically to provide positional feedback...

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Kohlgraf-Owens DC, Greusard L, Sukhov S, et al. Multi-frequency near-field scanning optical microscopy. Nanotechnology. 2013;25(3):035203doi: 10.1088/0957-4484/25/3/035203.
Kohlgraf-Owens, D. C., Greusard, L., Sukhov, S., Wilde, Y. D., & Dogariu, A. (2014). Multi-frequency near-field scanning optical microscopy. Nanotechnology, 25(3), 035203. https://doi.org/10.1088/0957-4484/25/3/035203
Kohlgraf-Owens, Dana C, et al. "Multi-frequency near-field scanning optical microscopy." Nanotechnology vol. 25,3 (2014): 035203. doi: https://doi.org/10.1088/0957-4484/25/3/035203
Kohlgraf-Owens DC, Greusard L, Sukhov S, Wilde YD, Dogariu A. Multi-frequency near-field scanning optical microscopy. Nanotechnology. 2014 Jan 24;25(3):035203. doi: 10.1088/0957-4484/25/3/035203. Epub 2013 Dec 17. PMID: 24346240.
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Effect of exercise on motor and nonmotor symptoms of Parkinson's disease.

Parkinson's disease

Dashtipour K, Johnson E, Kani C, Kani K, Hadi E, Ghamsary M, Pezeshkian S, Chen JJ.
PMID: 25722915
Parkinsons Dis. 2015;2015:586378. doi: 10.1155/2015/586378. Epub 2015 Feb 02.

Background. Novel rehabilitation strategies have demonstrated potential benefits for motor and non-motor symptoms of Parkinson's disease (PD). Objective. To compare the effects of Lee Silverman Voice Therapy BIG (LSVT BIG therapy) versus a general exercise program (combined treadmill plus...

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Dashtipour K, Johnson E, Kani C, et al. Effect of exercise on motor and nonmotor symptoms of Parkinson's disease. Parkinsons Dis. 2015;2015:586378doi: 10.1155/2015/586378.
Dashtipour, K., Johnson, E., Kani, C., Kani, K., Hadi, E., Ghamsary, M., Pezeshkian, S., & Chen, J. J. (2015). Effect of exercise on motor and nonmotor symptoms of Parkinson's disease. Parkinson's disease, 2015586378. https://doi.org/10.1155/2015/586378
Dashtipour, Khashayar, et al. "Effect of exercise on motor and nonmotor symptoms of Parkinson's disease." Parkinson's disease vol. 2015 (2015): 586378. doi: https://doi.org/10.1155/2015/586378
Dashtipour K, Johnson E, Kani C, Kani K, Hadi E, Ghamsary M, Pezeshkian S, Chen JJ. Effect of exercise on motor and nonmotor symptoms of Parkinson's disease. Parkinsons Dis. 2015;2015:586378. doi: 10.1155/2015/586378. Epub 2015 Feb 02. PMID: 25722915; PMCID: PMC4333331.
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RPCA-KFE: Key Frame Extraction for Video Using Robust Principal Component Analysis.

IEEE transactions on image processing : a publication of the IEEE Signal Processing Society

Dang C, Radha H.
PMID: 26087486
IEEE Trans Image Process. 2015 Nov;24(11):3742-53. doi: 10.1109/TIP.2015.2445572. Epub 2015 Jun 15.

Key frame extraction algorithms consider the problem of selecting a subset of the most informative frames from a video to summarize its content. Several applications, such as video summarization, search, indexing, and prints from video, can benefit from extracted...

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Dang C, Radha H. RPCA-KFE: Key Frame Extraction for Video Using Robust Principal Component Analysis. IEEE Trans Image Process. 2015;24(11):3742-53doi: 10.1109/TIP.2015.2445572.
Dang, C., & Radha, H. (2015). RPCA-KFE: Key Frame Extraction for Video Using Robust Principal Component Analysis. IEEE transactions on image processing : a publication of the IEEE Signal Processing Society, 24(11), 3742-53. https://doi.org/10.1109/TIP.2015.2445572
Dang, Chinh, and Radha, Hayder. "RPCA-KFE: Key Frame Extraction for Video Using Robust Principal Component Analysis." IEEE transactions on image processing : a publication of the IEEE Signal Processing Society vol. 24,11 (2015): 3742-53. doi: https://doi.org/10.1109/TIP.2015.2445572
Dang C, Radha H. RPCA-KFE: Key Frame Extraction for Video Using Robust Principal Component Analysis. IEEE Trans Image Process. 2015 Nov;24(11):3742-53. doi: 10.1109/TIP.2015.2445572. Epub 2015 Jun 15. PMID: 26087486.
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Tongxinluo Enhances Neurogenesis and Angiogenesis in Peri-Infarct Area and Subventricular Zone and Promotes Functional Recovery after Focal Cerebral Ischemic Infarction in Hypertensive Rats.

Evidence-based complementary and alternative medicine : eCAM

Chen L, Wang X, Zhang J, Dang C, Liu G, Liang Z, Huang G, Zhao W, Zeng J.
PMID: 27069496
Evid Based Complement Alternat Med. 2016;2016:8549590. doi: 10.1155/2016/8549590. Epub 2016 Mar 16.

Background. Tongxinluo is a traditional Chinese medicine compound with the potential to promote the neuronal functional recovery in cerebral ischemic infarction. Objective. This study aimed to disclose whether tongxinluo promotes neurological functional recovery and neurogenesis and angiogenesis in the...

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Chen L, Wang X, Zhang J, et al. Tongxinluo Enhances Neurogenesis and Angiogenesis in Peri-Infarct Area and Subventricular Zone and Promotes Functional Recovery after Focal Cerebral Ischemic Infarction in Hypertensive Rats. Evid Based Complement Alternat Med. 2016;2016:8549590doi: 10.1155/2016/8549590.
Chen, L., Wang, X., Zhang, J., Dang, C., Liu, G., Liang, Z., Huang, G., Zhao, W., & Zeng, J. (2016). Tongxinluo Enhances Neurogenesis and Angiogenesis in Peri-Infarct Area and Subventricular Zone and Promotes Functional Recovery after Focal Cerebral Ischemic Infarction in Hypertensive Rats. Evidence-based complementary and alternative medicine : eCAM, 20168549590. https://doi.org/10.1155/2016/8549590
Chen, Li, et al. "Tongxinluo Enhances Neurogenesis and Angiogenesis in Peri-Infarct Area and Subventricular Zone and Promotes Functional Recovery after Focal Cerebral Ischemic Infarction in Hypertensive Rats." Evidence-based complementary and alternative medicine : eCAM vol. 2016 (2016): 8549590. doi: https://doi.org/10.1155/2016/8549590
Chen L, Wang X, Zhang J, Dang C, Liu G, Liang Z, Huang G, Zhao W, Zeng J. Tongxinluo Enhances Neurogenesis and Angiogenesis in Peri-Infarct Area and Subventricular Zone and Promotes Functional Recovery after Focal Cerebral Ischemic Infarction in Hypertensive Rats. Evid Based Complement Alternat Med. 2016;2016:8549590. doi: 10.1155/2016/8549590. Epub 2016 Mar 16. PMID: 27069496; PMCID: PMC4812278.
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Why we need more algal genomes.

Journal of phycology

Bhattacharya D, Qiu H, Price DC, Yoon HS.
PMID: 26986254
J Phycol. 2015 Feb;51(1):1-5. doi: 10.1111/jpy.12267. Epub 2015 Jan 08.

No abstract available.

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Bhattacharya D, Qiu H, Price DC, et al. Why we need more algal genomes. J Phycol. 2015;51(1):1-5doi: 10.1111/jpy.12267.
Bhattacharya, D., Qiu, H., Price, D. C., & Yoon, H. S. (2015). Why we need more algal genomes. Journal of phycology, 51(1), 1-5. https://doi.org/10.1111/jpy.12267
Bhattacharya, Debashish, et al. "Why we need more algal genomes." Journal of phycology vol. 51,1 (2015): 1-5. doi: https://doi.org/10.1111/jpy.12267
Bhattacharya D, Qiu H, Price DC, Yoon HS. Why we need more algal genomes. J Phycol. 2015 Feb;51(1):1-5. doi: 10.1111/jpy.12267. Epub 2015 Jan 08. PMID: 26986254.
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The complexity of PDGFR signaling: regulation of adipose progenitor maintenance and adipocyte-myofibroblast transition.

Stem cell investigation

Dani C, Pfeifer A.
PMID: 28529943
Stem Cell Investig. 2017 Apr 14;4:28. doi: 10.21037/sci.2017.04.02. eCollection 2017.

No abstract available.

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Dani C, Pfeifer A. The complexity of PDGFR signaling: regulation of adipose progenitor maintenance and adipocyte-myofibroblast transition. Stem Cell Investig. 2017;4:28doi: 10.21037/sci.2017.04.02.
Dani, C., & Pfeifer, A. (2017). The complexity of PDGFR signaling: regulation of adipose progenitor maintenance and adipocyte-myofibroblast transition. Stem cell investigation, 428. https://doi.org/10.21037/sci.2017.04.02
Dani, Christian, and Pfeifer, Alexander. "The complexity of PDGFR signaling: regulation of adipose progenitor maintenance and adipocyte-myofibroblast transition." Stem cell investigation vol. 4 (2017): 28. doi: https://doi.org/10.21037/sci.2017.04.02
Dani C, Pfeifer A. The complexity of PDGFR signaling: regulation of adipose progenitor maintenance and adipocyte-myofibroblast transition. Stem Cell Investig. 2017 Apr 14;4:28. doi: 10.21037/sci.2017.04.02. eCollection 2017. PMID: 28529943; PMCID: PMC5420527.
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Space Structure and Clustering of Categorical Data.

IEEE transactions on neural networks and learning systems

Qian Y, Li F, Liang J, Liu B, Dang C.
PMID: 26441455
IEEE Trans Neural Netw Learn Syst. 2016 Oct;27(10):2047-59. doi: 10.1109/TNNLS.2015.2451151. Epub 2015 Oct 02.

Learning from categorical data plays a fundamental role in such areas as pattern recognition, machine learning, data mining, and knowledge discovery. To effectively discover the group structure inherent in a set of categorical objects, many categorical clustering algorithms have...

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Qian Y, Li F, Liang J, et al. Space Structure and Clustering of Categorical Data. IEEE Trans Neural Netw Learn Syst. 2015;27(10):2047-59doi: 10.1109/TNNLS.2015.2451151.
Qian, Y., Li, F., Liang, J., Liu, B., & Dang, C. (2016). Space Structure and Clustering of Categorical Data. IEEE transactions on neural networks and learning systems, 27(10), 2047-59. https://doi.org/10.1109/TNNLS.2015.2451151
Qian, Yuhua, et al. "Space Structure and Clustering of Categorical Data." IEEE transactions on neural networks and learning systems vol. 27,10 (2016): 2047-59. doi: https://doi.org/10.1109/TNNLS.2015.2451151
Qian Y, Li F, Liang J, Liu B, Dang C. Space Structure and Clustering of Categorical Data. IEEE Trans Neural Netw Learn Syst. 2016 Oct;27(10):2047-59. doi: 10.1109/TNNLS.2015.2451151. Epub 2015 Oct 02. PMID: 26441455.
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Drosophila Neuronal Injury Follows a Temporal Sequence of Cellular Events Leading to Degeneration at the Neuromuscular Junction.

Journal of experimental neuroscience

Lincoln BL, Alabsi SH, Frendo N, Freund R, Keller LC.
PMID: 26512206
J Exp Neurosci. 2015 Oct 18;9:1-9. doi: 10.4137/JEN.S25516. eCollection 2015.

Neurodegenerative diseases affect millions of people worldwide, and as the global population ages, there is a critical need to improve our understanding of the molecular and cellular mechanisms that drive neurodegeneration. At the molecular level, neurodegeneration involves the activation...

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Lincoln BL, Alabsi SH, Frendo N, et al. Drosophila Neuronal Injury Follows a Temporal Sequence of Cellular Events Leading to Degeneration at the Neuromuscular Junction. J Exp Neurosci. 2015;9:1-9doi: 10.4137/JEN.S25516.
Lincoln, B. L., Alabsi, S. H., Frendo, N., Freund, R., & Keller, L. C. (2015). Drosophila Neuronal Injury Follows a Temporal Sequence of Cellular Events Leading to Degeneration at the Neuromuscular Junction. Journal of experimental neuroscience, 91-9. https://doi.org/10.4137/JEN.S25516
Lincoln, Barron L, et al. "Drosophila Neuronal Injury Follows a Temporal Sequence of Cellular Events Leading to Degeneration at the Neuromuscular Junction." Journal of experimental neuroscience vol. 9 (2015): 1-9. doi: https://doi.org/10.4137/JEN.S25516
Lincoln BL, Alabsi SH, Frendo N, Freund R, Keller LC. Drosophila Neuronal Injury Follows a Temporal Sequence of Cellular Events Leading to Degeneration at the Neuromuscular Junction. J Exp Neurosci. 2015 Oct 18;9:1-9. doi: 10.4137/JEN.S25516. eCollection 2015. PMID: 26512206; PMCID: PMC4612769.
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