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CoExpNetViz: Comparative Co-Expression Networks Construction and Visualization Tool.

Frontiers in plant science

Tzfadia O, Diels T, De Meyer S, Vandepoele K, Aharoni A, Van de Peer Y.
PMID: 26779228
Front Plant Sci. 2016 Jan 05;6:1194. doi: 10.3389/fpls.2015.01194. eCollection 2015.

MOTIVATION: Comparative transcriptomics is a common approach in functional gene discovery efforts. It allows for finding conserved co-expression patterns between orthologous genes in closely related plant species, suggesting that these genes potentially share similar function and regulation. Several efficient...

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Tzfadia O, Diels T, De Meyer S, et al. CoExpNetViz: Comparative Co-Expression Networks Construction and Visualization Tool. Front Plant Sci. 2016;6:1194doi: 10.3389/fpls.2015.01194.
Tzfadia, O., Diels, T., De Meyer, S., Vandepoele, K., Aharoni, A., & Van de Peer, Y. (2015). CoExpNetViz: Comparative Co-Expression Networks Construction and Visualization Tool. Frontiers in plant science, 61194. https://doi.org/10.3389/fpls.2015.01194
Tzfadia, Oren, et al. "CoExpNetViz: Comparative Co-Expression Networks Construction and Visualization Tool." Frontiers in plant science vol. 6 (2015): 1194. doi: https://doi.org/10.3389/fpls.2015.01194
Tzfadia O, Diels T, De Meyer S, Vandepoele K, Aharoni A, Van de Peer Y. CoExpNetViz: Comparative Co-Expression Networks Construction and Visualization Tool. Front Plant Sci. 2016 Jan 05;6:1194. doi: 10.3389/fpls.2015.01194. eCollection 2015. PMID: 26779228; PMCID: PMC4700130.
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[No title available]

International journal of systematic and evolutionary microbiology

De Meyer SE, Tan HW, Andrews M, Heenan PB, Willems A.
PMID: 26610329
Int J Syst Evol Microbiol. 2016 Feb;66(2):786-795. doi: 10.1099/ijsem.0.000796. Epub 2015 Nov 26.

In total, 31 strains of Gram-stain-negative, rod-shaped bacteria were isolated from

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De Meyer SE, Tan HW, Andrews M, et al. . Int J Syst Evol Microbiol. 2015;66(2):786-795doi: 10.1099/ijsem.0.000796.
De Meyer, S. E., Tan, H. W., Andrews, M., Heenan, P. B., & Willems, A. (2016). . International journal of systematic and evolutionary microbiology, 66(2), 786-795. https://doi.org/10.1099/ijsem.0.000796
De Meyer, Sofie E, et al. "." International journal of systematic and evolutionary microbiology vol. 66,2 (2016): 786-795. doi: https://doi.org/10.1099/ijsem.0.000796
De Meyer SE, Tan HW, Andrews M, Heenan PB, Willems A. . Int J Syst Evol Microbiol. 2016 Feb;66(2):786-795. doi: 10.1099/ijsem.0.000796. Epub 2015 Nov 26. PMID: 26610329.
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Dietary practices in propionic acidemia: A European survey.

Molecular genetics and metabolism reports

Daly A, Pinto A, Evans S, Almeida MF, Assoun M, Belanger-Quintana A, Bernabei SM, Bollhalder S, Cassiman D, Champion H, Chan H, Dalmau J, de Boer F, de Laet C, de Meyer A, Desloovere A, Dianin A, Dixon M, Dokoupil K, Dubois S, Eyskens F, Faria A, Fasan I, Favre E, Feillet F, Fekete A, Gallo G, Gingell C, Gribben J, Kaalund Hansen K, Ter Horst NM, Jankowski C, Janssen-Regelink R, Jones I, Jouault C, Kahrs GE, Kok IL, Kowalik A, Laguerre C, Le Verge S, Lilje R, Maddalon C, Mayr D, Meyer U, Micciche A, Och U, Robert M, Rocha JC, Rogozinski H, Rohde C, Ross K, Saruggia I, Schlune A, Singleton K, Sjoqvist E, Skeath R, Stolen LH, Terry A, Timmer C, Tomlinson L, Tooke A, Vande Kerckhove K, van Dam E, van den Hurk T, van der Ploeg L, van Driessche M, van Rijn M, van Wegberg A, Vasconcelos C, Vestergaard H, Vitoria I, Webster D, White FJ, White L, Zweers H, MacDonald A.
PMID: 29021961
Mol Genet Metab Rep. 2017 Oct 03;13:83-89. doi: 10.1016/j.ymgmr.2017.09.002. eCollection 2017 Dec.

BACKGROUND: The definitive dietary management of propionic acidaemia (PA) is unknown although natural protein restriction with adequate energy provision is of key importance.AIM: To describe European dietary practices in the management of patients with PA prior to the publication...

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Daly A, Pinto A, Evans S, et al. Dietary practices in propionic acidemia: A European survey. Mol Genet Metab Rep. 2017;13:83-89doi: 10.1016/j.ymgmr.2017.09.002.
Daly, A., Pinto, A., Evans, S., Almeida, M. F., Assoun, M., Belanger-Quintana, A., Bernabei, S. M., Bollhalder, S., Cassiman, D., Champion, H., Chan, H., Dalmau, J., de Boer, F., de Laet, C., de Meyer, A., Desloovere, A., Dianin, A., Dixon, M., Dokoupil, K., Dubois, S., Eyskens, F., Faria, A., Fasan, I., Favre, E., Feillet, F., Fekete, A., Gallo, G., Gingell, C., Gribben, J., Kaalund Hansen, K., Ter Horst, N. M., Jankowski, C., Janssen-Regelink, R., Jones, I., Jouault, C., Kahrs, G. E., Kok, I. L., Kowalik, A., Laguerre, C., Le Verge, S., Lilje, R., Maddalon, C., Mayr, D., Meyer, U., Micciche, A., Och, U., Robert, M., Rocha, J. C., Rogozinski, H., Rohde, C., Ross, K., Saruggia, I., Schlune, A., Singleton, K., Sjoqvist, E., Skeath, R., Stolen, L. H., Terry, A., Timmer, C., Tomlinson, L., Tooke, A., Vande Kerckhove, K., van Dam, E., van den Hurk, T., van der Ploeg, L., van Driessche, M., van Rijn, M., van Wegberg, A., Vasconcelos, C., Vestergaard, H., Vitoria, I., Webster, D., White, F. J., White, L., Zweers, H., & MacDonald, A. (2017). Dietary practices in propionic acidemia: A European survey. Molecular genetics and metabolism reports, 1383-89. https://doi.org/10.1016/j.ymgmr.2017.09.002
Daly, A, et al. "Dietary practices in propionic acidemia: A European survey." Molecular genetics and metabolism reports vol. 13 (2017): 83-89. doi: https://doi.org/10.1016/j.ymgmr.2017.09.002
Daly A, Pinto A, Evans S, Almeida MF, Assoun M, Belanger-Quintana A, Bernabei SM, Bollhalder S, Cassiman D, Champion H, Chan H, Dalmau J, de Boer F, de Laet C, de Meyer A, Desloovere A, Dianin A, Dixon M, Dokoupil K, Dubois S, Eyskens F, Faria A, Fasan I, Favre E, Feillet F, Fekete A, Gallo G, Gingell C, Gribben J, Kaalund Hansen K, Ter Horst NM, Jankowski C, Janssen-Regelink R, Jones I, Jouault C, Kahrs GE, Kok IL, Kowalik A, Laguerre C, Le Verge S, Lilje R, Maddalon C, Mayr D, Meyer U, Micciche A, Och U, Robert M, Rocha JC, Rogozinski H, Rohde C, Ross K, Saruggia I, Schlune A, Singleton K, Sjoqvist E, Skeath R, Stolen LH, Terry A, Timmer C, Tomlinson L, Tooke A, Vande Kerckhove K, van Dam E, van den Hurk T, van der Ploeg L, van Driessche M, van Rijn M, van Wegberg A, Vasconcelos C, Vestergaard H, Vitoria I, Webster D, White FJ, White L, Zweers H, MacDonald A. Dietary practices in propionic acidemia: A European survey. Mol Genet Metab Rep. 2017 Oct 03;13:83-89. doi: 10.1016/j.ymgmr.2017.09.002. eCollection 2017 Dec. PMID: 29021961; PMCID: PMC5633157.
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Isometric Stretch Alters Vascular Reactivity of Mouse Aortic Segments.

Frontiers in physiology

De Moudt S, Leloup A, Van Hove C, De Meyer G, Fransen P.
PMID: 28360864
Front Physiol. 2017 Mar 16;8:157. doi: 10.3389/fphys.2017.00157. eCollection 2017.

Most vaso-reactive studies in mouse aortic segments are performed in isometric conditions and at an optimal preload, which is the preload corresponding to a maximal contraction by non-receptor or receptor-mediated stimulation. In general, this optimal preload ranges from about...

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De Moudt S, Leloup A, Van Hove C, et al. Isometric Stretch Alters Vascular Reactivity of Mouse Aortic Segments. Front Physiol. 2017;8:157doi: 10.3389/fphys.2017.00157.
De Moudt, S., Leloup, A., Van Hove, C., De Meyer, G., & Fransen, P. (2017). Isometric Stretch Alters Vascular Reactivity of Mouse Aortic Segments. Frontiers in physiology, 8157. https://doi.org/10.3389/fphys.2017.00157
De Moudt, Sofie, et al. "Isometric Stretch Alters Vascular Reactivity of Mouse Aortic Segments." Frontiers in physiology vol. 8 (2017): 157. doi: https://doi.org/10.3389/fphys.2017.00157
De Moudt S, Leloup A, Van Hove C, De Meyer G, Fransen P. Isometric Stretch Alters Vascular Reactivity of Mouse Aortic Segments. Front Physiol. 2017 Mar 16;8:157. doi: 10.3389/fphys.2017.00157. eCollection 2017. PMID: 28360864; PMCID: PMC5352655.
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Fauna europaea: Diptera - brachycera.

Biodiversity data journal

Pape T, Beuk P, Pont AC, Shatalkin AI, Ozerov AL, Woźnica AJ, Merz B, Bystrowski C, Raper C, Bergström C, Kehlmaier C, Clements DK, Greathead D, Kameneva EP, Nartshuk E, Petersen FT, Weber G, Bächli G, Geller-Grimm F, Van de Weyer G, Tschorsnig HP, de Jong H, van Zuijlen JW, Vaňhara J, Roháček J, Ziegler J, Majer J, Hůrka K, Holston K, Rognes K, Greve-Jensen L, Munari L, de Meyer M, Pollet M, Speight MC, Ebejer MJ, Martinez M, Carles-Tolrá M, Földvári M, Chvála M, Barták M, Evenhuis NL, Chandler PJ, Cerretti P, Meier R, Rozkosny R, Prescher S, Gaimari SD, Zatwarnicki T, Zeegers T, Dikow T, Korneyev VA, Richter VA, Michelsen V, Tanasijtshuk VN, Mathis WN, Hubenov Z, de Jong Y.
PMID: 25733962
Biodivers Data J. 2015 Feb 20;(3):e4187. doi: 10.3897/BDJ.3.e4187. eCollection 2015.

Fauna Europaea provides a public web-service with an index of scientific names (including important synonyms) of all extant multicellular European terrestrial and freshwater animals and their geographical distribution at the level of countries and major islands (east of the...

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Pape T, Beuk P, Pont AC, et al. Fauna europaea: Diptera - brachycera. Biodivers Data J. 2015;(3):e4187doi: 10.3897/BDJ.3.e4187.
Pape, T., Beuk, P., Pont, A. C., Shatalkin, A. I., Ozerov, A. L., Woźnica, A. J., Merz, B., Bystrowski, C., Raper, C., Bergström, C., Kehlmaier, C., Clements, D. K., Greathead, D., Kameneva, E. P., Nartshuk, E., Petersen, F. T., Weber, G., Bächli, G., Geller-Grimm, F., Van de Weyer, G., Tschorsnig, H. P., de Jong, H., van Zuijlen, J. W., Vaňhara, J., Roháček, J., Ziegler, J., Majer, J., Hůrka, K., Holston, K., Rognes, K., Greve-Jensen, L., Munari, L., de Meyer, M., Pollet, M., Speight, M. C., Ebejer, M. J., Martinez, M., Carles-Tolrá, M., Földvári, M., Chvála, M., Barták, M., Evenhuis, N. L., Chandler, P. J., Cerretti, P., Meier, R., Rozkosny, R., Prescher, S., Gaimari, S. D., Zatwarnicki, T., Zeegers, T., Dikow, T., Korneyev, V. A., Richter, V. A., Michelsen, V., Tanasijtshuk, V. N., Mathis, W. N., Hubenov, Z., & de Jong, Y. (2015). Fauna europaea: Diptera - brachycera. Biodiversity data journal, (3), e4187. https://doi.org/10.3897/BDJ.3.e4187
Pape, Thomas, et al. "Fauna europaea: Diptera - brachycera." Biodiversity data journal vol. ,3 (2015): e4187. doi: https://doi.org/10.3897/BDJ.3.e4187
Pape T, Beuk P, Pont AC, Shatalkin AI, Ozerov AL, Woźnica AJ, Merz B, Bystrowski C, Raper C, Bergström C, Kehlmaier C, Clements DK, Greathead D, Kameneva EP, Nartshuk E, Petersen FT, Weber G, Bächli G, Geller-Grimm F, Van de Weyer G, Tschorsnig HP, de Jong H, van Zuijlen JW, Vaňhara J, Roháček J, Ziegler J, Majer J, Hůrka K, Holston K, Rognes K, Greve-Jensen L, Munari L, de Meyer M, Pollet M, Speight MC, Ebejer MJ, Martinez M, Carles-Tolrá M, Földvári M, Chvála M, Barták M, Evenhuis NL, Chandler PJ, Cerretti P, Meier R, Rozkosny R, Prescher S, Gaimari SD, Zatwarnicki T, Zeegers T, Dikow T, Korneyev VA, Richter VA, Michelsen V, Tanasijtshuk VN, Mathis WN, Hubenov Z, de Jong Y. Fauna europaea: Diptera - brachycera. Biodivers Data J. 2015 Feb 20;(3):e4187. doi: 10.3897/BDJ.3.e4187. eCollection 2015. PMID: 25733962; PMCID: PMC4339814.
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Molecular competition effects in liquid-phase adsorption of long-chain n-alkane mixtures in ZSM-5 zeolite pores.

Angewandte Chemie (International ed. in English)

Denayer JF, De Meyer K, Martens JA, Baron GV.
PMID: 12820265
Angew Chem Int Ed Engl. 2003 Jun 23;42(24):2774-7. doi: 10.1002/anie.200351012.

No abstract available.

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Denayer JF, De Meyer K, Martens JA, et al. Molecular competition effects in liquid-phase adsorption of long-chain n-alkane mixtures in ZSM-5 zeolite pores. Angew Chem Int Ed Engl. 2003;42(24):2774-7doi: 10.1002/anie.200351012.
Denayer, J. F., De Meyer, K., Martens, J. A., & Baron, G. V. (2003). Molecular competition effects in liquid-phase adsorption of long-chain n-alkane mixtures in ZSM-5 zeolite pores. Angewandte Chemie (International ed. in English), 42(24), 2774-7. https://doi.org/10.1002/anie.200351012
Denayer, Joeri F M, et al. "Molecular competition effects in liquid-phase adsorption of long-chain n-alkane mixtures in ZSM-5 zeolite pores." Angewandte Chemie (International ed. in English) vol. 42,24 (2003): 2774-7. doi: https://doi.org/10.1002/anie.200351012
Denayer JF, De Meyer K, Martens JA, Baron GV. Molecular competition effects in liquid-phase adsorption of long-chain n-alkane mixtures in ZSM-5 zeolite pores. Angew Chem Int Ed Engl. 2003 Jun 23;42(24):2774-7. doi: 10.1002/anie.200351012. PMID: 12820265.
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Salicylic Acid Produced by the Rhizobacterium Pseudomonas aeruginosa 7NSK2 Induces Resistance to Leaf Infection by Botrytis cinerea on Bean.

Phytopathology

De Meyer G, Höfte M.
PMID: 18945074
Phytopathology. 1997 Jun;87(6):588-93. doi: 10.1094/PHYTO.1997.87.6.588.

ABSTRACT Selected strains of nonpathogenic rhizobacteria can induce a systemic resistance in plants that is effective against various pathogens. In an assay with bean plants, we investigated which determinants of the rhizobacterium Pseudomonas aeruginosa 7NSK2 are important for induction...

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De Meyer G, Höfte M. Salicylic Acid Produced by the Rhizobacterium Pseudomonas aeruginosa 7NSK2 Induces Resistance to Leaf Infection by Botrytis cinerea on Bean. Phytopathology. 1997;87(6):588-93doi: 10.1094/PHYTO.1997.87.6.588.
De Meyer, G., & Höfte, M. (1997). Salicylic Acid Produced by the Rhizobacterium Pseudomonas aeruginosa 7NSK2 Induces Resistance to Leaf Infection by Botrytis cinerea on Bean. Phytopathology, 87(6), 588-93. https://doi.org/10.1094/PHYTO.1997.87.6.588
De Meyer, G, and Höfte, M. "Salicylic Acid Produced by the Rhizobacterium Pseudomonas aeruginosa 7NSK2 Induces Resistance to Leaf Infection by Botrytis cinerea on Bean." Phytopathology vol. 87,6 (1997): 588-93. doi: https://doi.org/10.1094/PHYTO.1997.87.6.588
De Meyer G, Höfte M. Salicylic Acid Produced by the Rhizobacterium Pseudomonas aeruginosa 7NSK2 Induces Resistance to Leaf Infection by Botrytis cinerea on Bean. Phytopathology. 1997 Jun;87(6):588-93. doi: 10.1094/PHYTO.1997.87.6.588. PMID: 18945074.
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On a Problematical Organ of the Lamprey.

Journal of anatomy

de Beer GR.
PMID: 17104045
J Anat. 1924 Oct;59:97-107.

No abstract available.

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de Beer GR. On a Problematical Organ of the Lamprey. J Anat. 1924;59:97-107
de Beer, G. R. (1924). On a Problematical Organ of the Lamprey. Journal of anatomy, 5997-107.
de Beer, G R. "On a Problematical Organ of the Lamprey." Journal of anatomy vol. 59 (1924): 97-107.
de Beer GR. On a Problematical Organ of the Lamprey. J Anat. 1924 Oct;59:97-107. PMID: 17104045; PMCID: PMC1249858.
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An unusual digestive foreign body.

Case reports in gastroenterology

Frossard JL, de Peyer R.
PMID: 21552446
Case Rep Gastroenterol. 2011 Apr 13;5(1):201-5. doi: 10.1159/000326925.

Foreign digestive bodies present unusual circumstances because they are associated with various degrees of local trauma and may lead to direct perforation or delayed local injury. Patients with foreign bodies should be evaluated upon admission for signs of impaction...

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Frossard JL, de Peyer R. An unusual digestive foreign body. Case Rep Gastroenterol. 2011;5(1):201-5doi: 10.1159/000326925.
Frossard, J. L., & de Peyer, R. (2011). An unusual digestive foreign body. Case reports in gastroenterology, 5(1), 201-5. https://doi.org/10.1159/000326925
Frossard, Jean Louis, and de Peyer, Raymond. "An unusual digestive foreign body." Case reports in gastroenterology vol. 5,1 (2011): 201-5. doi: https://doi.org/10.1159/000326925
Frossard JL, de Peyer R. An unusual digestive foreign body. Case Rep Gastroenterol. 2011 Apr 13;5(1):201-5. doi: 10.1159/000326925. PMID: 21552446; PMCID: PMC3088749.
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ADAMTS13's tail tale.

Blood

Vanhoorelbeke K, Feys HB, De Meyer SF.
PMID: 19470435
Blood. 2009 May 21;113(21):5039-40. doi: 10.1182/blood-2009-02-201749.

No abstract available.

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Vanhoorelbeke K, Feys HB, De Meyer SF. ADAMTS13's tail tale. Blood. 2009;113(21):5039-40doi: 10.1182/blood-2009-02-201749.
Vanhoorelbeke, K., Feys, H. B., & De Meyer, S. F. (2009). ADAMTS13's tail tale. Blood, 113(21), 5039-40. https://doi.org/10.1182/blood-2009-02-201749
Vanhoorelbeke, Karen, et al. "ADAMTS13's tail tale." Blood vol. 113,21 (2009): 5039-40. doi: https://doi.org/10.1182/blood-2009-02-201749
Vanhoorelbeke K, Feys HB, De Meyer SF. ADAMTS13's tail tale. Blood. 2009 May 21;113(21):5039-40. doi: 10.1182/blood-2009-02-201749. PMID: 19470435.
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Exploring the vibrational fingerprint of the electronic excitation energy via molecular dynamics.

The Journal of chemical physics

Van Yperen-De Deyne A, De Meyer T, Pauwels E, Ghysels A, De Clerck K, Waroquier M, Van Speybroeck V, Hemelsoet K.
PMID: 24712778
J Chem Phys. 2014 Apr 07;140(13):134105. doi: 10.1063/1.4869937.

A Fourier-based method is presented to relate changes of the molecular structure during a molecular dynamics simulation with fluctuations in the electronic excitation energy. The method implies sampling of the ground state potential energy surface. Subsequently, the power spectrum...

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Van Yperen-De Deyne A, De Meyer T, Pauwels E, et al. Exploring the vibrational fingerprint of the electronic excitation energy via molecular dynamics. J Chem Phys. 2014;140(13):134105doi: 10.1063/1.4869937.
Van Yperen-De Deyne, A., De Meyer, T., Pauwels, E., Ghysels, A., De Clerck, K., Waroquier, M., Van Speybroeck, V., & Hemelsoet, K. (2014). Exploring the vibrational fingerprint of the electronic excitation energy via molecular dynamics. The Journal of chemical physics, 140(13), 134105. https://doi.org/10.1063/1.4869937
Van Yperen-De Deyne, Andy, et al. "Exploring the vibrational fingerprint of the electronic excitation energy via molecular dynamics." The Journal of chemical physics vol. 140,13 (2014): 134105. doi: https://doi.org/10.1063/1.4869937
Van Yperen-De Deyne A, De Meyer T, Pauwels E, Ghysels A, De Clerck K, Waroquier M, Van Speybroeck V, Hemelsoet K. Exploring the vibrational fingerprint of the electronic excitation energy via molecular dynamics. J Chem Phys. 2014 Apr 07;140(13):134105. doi: 10.1063/1.4869937. PMID: 24712778.
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Coronary spasm after the topical use of cocaine in nasal surgery.

The American journal of case reports

Lenders GD, Jorens PG, De Meyer T, Vandendriessche T, Verbrugghe W, Vrints CJ.
PMID: 23569569
Am J Case Rep. 2013;14:76-9. doi: 10.12659/AJCR.883837. Epub 2013 Mar 18.

BACKGROUND: Cocaine is a frequently used recreational drug which imposes important health problems with even life-threatening cardiotoxicity. The therapeutic use of cocaine is nowadays restricted to topical anesthesia in ophthalmological and nasal surgery but the possible hazards of this...

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Lenders GD, Jorens PG, De Meyer T, et al. Coronary spasm after the topical use of cocaine in nasal surgery. Am J Case Rep. 2013;14:76-9doi: 10.12659/AJCR.883837.
Lenders, G. D., Jorens, P. G., De Meyer, T., Vandendriessche, T., Verbrugghe, W., & Vrints, C. J. (2013). Coronary spasm after the topical use of cocaine in nasal surgery. The American journal of case reports, 1476-9. https://doi.org/10.12659/AJCR.883837
Lenders, Guy D, et al. "Coronary spasm after the topical use of cocaine in nasal surgery." The American journal of case reports vol. 14 (2013): 76-9. doi: https://doi.org/10.12659/AJCR.883837
Lenders GD, Jorens PG, De Meyer T, Vandendriessche T, Verbrugghe W, Vrints CJ. Coronary spasm after the topical use of cocaine in nasal surgery. Am J Case Rep. 2013;14:76-9. doi: 10.12659/AJCR.883837. Epub 2013 Mar 18. PMID: 23569569; PMCID: PMC3619047.
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