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Byzantine politics: Using simulations to make sense of the Middle East

science instructors

Dougherty BK.
GSID: d_Wak2s2dSoJ
BK Dougherty - PS: Political Science & Politics, 2003 - cambridge.org

Byzantine Politics: Using Simulations to Make Sense of the Middle East Page 1 PSOnline www.apsanet.org 239 Byzantine Politics: Using Simulations to Make Sense of the Middle East …

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Dougherty, B. K. (2003). Byzantine politics: Using simulations to make sense of the Middle East. PS: Political Science & Politics, 36(2), 239-244.
Dougherty, Beth K. "Byzantine politics: Using simulations to make sense of the Middle East." PS: Political Science & Politics 36.2 (2003): 239-244.
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Efficient experimental design for uncertainty reduction in gene regulatory networks.

BMC bioinformatics

Dehghannasiri R, Yoon BJ, Dougherty ER.
PMID: 26423515
BMC Bioinformatics. 2015;16:S2. doi: 10.1186/1471-2105-16-S13-S2. Epub 2015 Sep 25.

BACKGROUND: An accurate understanding of interactions among genes plays a major role in developing therapeutic intervention methods. Gene regulatory networks often contain a significant amount of uncertainty. The process of prioritizing biological experiments to reduce the uncertainty of gene...

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Dehghannasiri R, Yoon BJ, Dougherty ER. Efficient experimental design for uncertainty reduction in gene regulatory networks. BMC Bioinformatics. 2015;16:S2doi: 10.1186/1471-2105-16-S13-S2.
Dehghannasiri, R., Yoon, B. J., & Dougherty, E. R. (2015). Efficient experimental design for uncertainty reduction in gene regulatory networks. BMC bioinformatics, 16S2. https://doi.org/10.1186/1471-2105-16-S13-S2
Dehghannasiri, Roozbeh, et al. "Efficient experimental design for uncertainty reduction in gene regulatory networks." BMC bioinformatics vol. 16 (2015): S2. doi: https://doi.org/10.1186/1471-2105-16-S13-S2
Dehghannasiri R, Yoon BJ, Dougherty ER. Efficient experimental design for uncertainty reduction in gene regulatory networks. BMC Bioinformatics. 2015;16:S2. doi: 10.1186/1471-2105-16-S13-S2. Epub 2015 Sep 25. PMID: 26423515; PMCID: PMC4597030.
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Dynamical modeling of uncertain interaction-based genomic networks.

BMC bioinformatics

Mohsenizadeh DN, Hua J, Bittner M, Dougherty ER.
PMID: 26423606
BMC Bioinformatics. 2015;16:S3. doi: 10.1186/1471-2105-16-S13-S3. Epub 2015 Sep 25.

BACKGROUND: Most dynamical models for genomic networks are built upon two current methodologies, one process-based and the other based on Boolean-type networks. Both are problematic when it comes to experimental design purposes in the laboratory. The first approach requires...

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Mohsenizadeh DN, Hua J, Bittner M, et al. Dynamical modeling of uncertain interaction-based genomic networks. BMC Bioinformatics. 2015;16:S3doi: 10.1186/1471-2105-16-S13-S3.
Mohsenizadeh, D. N., Hua, J., Bittner, M., & Dougherty, E. R. (2015). Dynamical modeling of uncertain interaction-based genomic networks. BMC bioinformatics, 16S3. https://doi.org/10.1186/1471-2105-16-S13-S3
Mohsenizadeh, Daniel N, et al. "Dynamical modeling of uncertain interaction-based genomic networks." BMC bioinformatics vol. 16 (2015): S3. doi: https://doi.org/10.1186/1471-2105-16-S13-S3
Mohsenizadeh DN, Hua J, Bittner M, Dougherty ER. Dynamical modeling of uncertain interaction-based genomic networks. BMC Bioinformatics. 2015;16:S3. doi: 10.1186/1471-2105-16-S13-S3. Epub 2015 Sep 25. PMID: 26423606; PMCID: PMC4596957.
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A General Strategy for Visible-Light Decaging Based on the Quinone Trimethyl Lock.

Journal of the American Chemical Society

Walton DP, Dougherty DA.
PMID: 28324654
J Am Chem Soc. 2017 Apr 05;139(13):4655-4658. doi: 10.1021/jacs.7b01548. Epub 2017 Mar 24.

Visible-light triggered quinone trimethyl locks are reported as a general design for long-wavelength photoremovable protecting groups for alcohols and amines. Intramolecular photoreduction unmasks a reactive phenol that undergoes fast lactonization to release alcohols and amines. Model substrates are released...

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Walton DP, Dougherty DA. A General Strategy for Visible-Light Decaging Based on the Quinone Trimethyl Lock. J Am Chem Soc. 2017;139(13):4655-4658doi: 10.1021/jacs.7b01548.
Walton, D. P., & Dougherty, D. A. (2017). A General Strategy for Visible-Light Decaging Based on the Quinone Trimethyl Lock. Journal of the American Chemical Society, 139(13), 4655-4658. https://doi.org/10.1021/jacs.7b01548
Walton, David P, and Dougherty, Dennis A. "A General Strategy for Visible-Light Decaging Based on the Quinone Trimethyl Lock." Journal of the American Chemical Society vol. 139,13 (2017): 4655-4658. doi: https://doi.org/10.1021/jacs.7b01548
Walton DP, Dougherty DA. A General Strategy for Visible-Light Decaging Based on the Quinone Trimethyl Lock. J Am Chem Soc. 2017 Apr 05;139(13):4655-4658. doi: 10.1021/jacs.7b01548. Epub 2017 Mar 24. PMID: 28324654.
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Time-Based Switching Control of Genetic Regulatory Networks: Toward Sequential Drug Intake for Cancer Therapy.

Cancer informatics

Oduola WO, Li X, Duan C, Qian L, Wu F, Dougherty ER.
PMID: 28579741
Cancer Inform. 2017 May 10;16:1176935117706888. doi: 10.1177/1176935117706888. eCollection 2017.

As cancer growth and development typically involves multiple genes and pathways, combination therapy has been touted as the standard of care in the treatment of cancer. However, drug toxicity becomes a major concern whenever a patient takes 2 or...

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Oduola WO, Li X, Duan C, et al. Time-Based Switching Control of Genetic Regulatory Networks: Toward Sequential Drug Intake for Cancer Therapy. Cancer Inform. 2017;16:1176935117706888doi: 10.1177/1176935117706888.
Oduola, W. O., Li, X., Duan, C., Qian, L., Wu, F., & Dougherty, E. R. (2017). Time-Based Switching Control of Genetic Regulatory Networks: Toward Sequential Drug Intake for Cancer Therapy. Cancer informatics, 161176935117706888. https://doi.org/10.1177/1176935117706888
Oduola, Wasiu Opeyemi, et al. "Time-Based Switching Control of Genetic Regulatory Networks: Toward Sequential Drug Intake for Cancer Therapy." Cancer informatics vol. 16 (2017): 1176935117706888. doi: https://doi.org/10.1177/1176935117706888
Oduola WO, Li X, Duan C, Qian L, Wu F, Dougherty ER. Time-Based Switching Control of Genetic Regulatory Networks: Toward Sequential Drug Intake for Cancer Therapy. Cancer Inform. 2017 May 10;16:1176935117706888. doi: 10.1177/1176935117706888. eCollection 2017. PMID: 28579741; PMCID: PMC5431492.
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Sex differences in the corpus callosum in preschool-aged children with autism spectrum disorder.

Molecular autism

Nordahl CW, Iosif AM, Young GS, Perry LM, Dougherty R, Lee A, Li D, Buonocore MH, Simon T, Rogers S, Wandell B, Amaral DG.
PMID: 25973163
Mol Autism. 2015 May 13;6:26. doi: 10.1186/s13229-015-0005-4. eCollection 2015.

BACKGROUND: Abnormalities in the corpus callosum have been reported in individuals with autism spectrum disorder (ASD), but few studies have evaluated young children. Sex differences in callosal organization and diffusion characteristics have also not been evaluated fully in ASD.METHODS:...

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Nordahl CW, Iosif AM, Young GS, et al. Sex differences in the corpus callosum in preschool-aged children with autism spectrum disorder. Mol Autism. 2015;6:26doi: 10.1186/s13229-015-0005-4.
Nordahl, C. W., Iosif, A. M., Young, G. S., Perry, L. M., Dougherty, R., Lee, A., Li, D., Buonocore, M. H., Simon, T., Rogers, S., Wandell, B., & Amaral, D. G. (2015). Sex differences in the corpus callosum in preschool-aged children with autism spectrum disorder. Molecular autism, 626. https://doi.org/10.1186/s13229-015-0005-4
Nordahl, Christine Wu, et al. "Sex differences in the corpus callosum in preschool-aged children with autism spectrum disorder." Molecular autism vol. 6 (2015): 26. doi: https://doi.org/10.1186/s13229-015-0005-4
Nordahl CW, Iosif AM, Young GS, Perry LM, Dougherty R, Lee A, Li D, Buonocore MH, Simon T, Rogers S, Wandell B, Amaral DG. Sex differences in the corpus callosum in preschool-aged children with autism spectrum disorder. Mol Autism. 2015 May 13;6:26. doi: 10.1186/s13229-015-0005-4. eCollection 2015. PMID: 25973163; PMCID: PMC4429319.
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Erratum: Sex differences in the corpus callosum in preschool-aged children with autism spectrum disorder.

Molecular autism

Nordahl CW, Iosif AM, Young GS, Perry LM, Dougherty R, Lee A, Li D, Buonocore MH, Simon T, Rogers S, Wandell B, Amaral DG.
PMID: 26097676
Mol Autism. 2015 Jun 20;6:39. doi: 10.1186/s13229-015-0030-3. eCollection 2015.

[This corrects the article DOI: 10.1186/s13229-015-0005-4.].

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Nordahl CW, Iosif AM, Young GS, et al. Erratum: Sex differences in the corpus callosum in preschool-aged children with autism spectrum disorder. Mol Autism. 2015;6:39doi: 10.1186/s13229-015-0030-3.
Nordahl, C. W., Iosif, A. M., Young, G. S., Perry, L. M., Dougherty, R., Lee, A., Li, D., Buonocore, M. H., Simon, T., Rogers, S., Wandell, B., & Amaral, D. G. (2015). Erratum: Sex differences in the corpus callosum in preschool-aged children with autism spectrum disorder. Molecular autism, 639. https://doi.org/10.1186/s13229-015-0030-3
Nordahl, Christine Wu, et al. "Erratum: Sex differences in the corpus callosum in preschool-aged children with autism spectrum disorder." Molecular autism vol. 6 (2015): 39. doi: https://doi.org/10.1186/s13229-015-0030-3
Nordahl CW, Iosif AM, Young GS, Perry LM, Dougherty R, Lee A, Li D, Buonocore MH, Simon T, Rogers S, Wandell B, Amaral DG. Erratum: Sex differences in the corpus callosum in preschool-aged children with autism spectrum disorder. Mol Autism. 2015 Jun 20;6:39. doi: 10.1186/s13229-015-0030-3. eCollection 2015. PMID: 26097676; PMCID: PMC4475327.
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Classifier Design Given an Uncertainty Class of Feature Distributions via Regularized Maximum Likelihood and the Incorporation of Biological Pathway Knowledge in Steady-State Phenotype Classification.

Pattern recognition

Esfahani MS, Knight J, Zollanvari A, Yoon BJ, Dougherty ER.
PMID: 26279589
Pattern Recognit. 2013 Oct 01;46(10):2783-2797. doi: 10.1016/j.patcog.2013.02.017.

Contemporary high-throughput technologies provide measurements of very large numbers of variables but often with very small sample sizes. This paper proposes an optimization-based paradigm for utilizing prior knowledge to design better performing classifiers when sample sizes are limited. We...

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Esfahani MS, Knight J, Zollanvari A, et al. Classifier Design Given an Uncertainty Class of Feature Distributions via Regularized Maximum Likelihood and the Incorporation of Biological Pathway Knowledge in Steady-State Phenotype Classification. Pattern Recognit. 2013;46(10):2783-2797doi: 10.1016/j.patcog.2013.02.017.
Esfahani, M. S., Knight, J., Zollanvari, A., Yoon, B. J., & Dougherty, E. R. (2013). Classifier Design Given an Uncertainty Class of Feature Distributions via Regularized Maximum Likelihood and the Incorporation of Biological Pathway Knowledge in Steady-State Phenotype Classification. Pattern recognition, 46(10), 2783-2797. https://doi.org/10.1016/j.patcog.2013.02.017
Esfahani, Mohammad Shahrokh, et al. "Classifier Design Given an Uncertainty Class of Feature Distributions via Regularized Maximum Likelihood and the Incorporation of Biological Pathway Knowledge in Steady-State Phenotype Classification." Pattern recognition vol. 46,10 (2013): 2783-2797. doi: https://doi.org/10.1016/j.patcog.2013.02.017
Esfahani MS, Knight J, Zollanvari A, Yoon BJ, Dougherty ER. Classifier Design Given an Uncertainty Class of Feature Distributions via Regularized Maximum Likelihood and the Incorporation of Biological Pathway Knowledge in Steady-State Phenotype Classification. Pattern Recognit. 2013 Oct 01;46(10):2783-2797. doi: 10.1016/j.patcog.2013.02.017. PMID: 26279589; PMCID: PMC4535735.
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Monitoring Charge Separation Processes in Quasi-One-Dimensional Organic Crystalline Structures.

Nano letters

Popescu A, Younts RA, Hoffman B, McAfee T, Dougherty DB, Ade HW, Gundogdu K, Bondarev IV.
PMID: 28873308
Nano Lett. 2017 Oct 11;17(10):6056-6061. doi: 10.1021/acs.nanolett.7b02471. Epub 2017 Sep 11.

We perform the transient absorption spectroscopy experiments to investigate the dynamics of the low-energy collective electron-hole excitations in α-copper phthalocyanine thin films. The results are interpreted in terms of the third-order nonlinear polarization response function. It is found that,...

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Popescu A, Younts RA, Hoffman B, et al. Monitoring Charge Separation Processes in Quasi-One-Dimensional Organic Crystalline Structures. Nano Lett. 2017;17(10):6056-6061doi: 10.1021/acs.nanolett.7b02471.
Popescu, A., Younts, R. A., Hoffman, B., McAfee, T., Dougherty, D. B., Ade, H. W., Gundogdu, K., & Bondarev, I. V. (2017). Monitoring Charge Separation Processes in Quasi-One-Dimensional Organic Crystalline Structures. Nano letters, 17(10), 6056-6061. https://doi.org/10.1021/acs.nanolett.7b02471
Popescu, Adrian, et al. "Monitoring Charge Separation Processes in Quasi-One-Dimensional Organic Crystalline Structures." Nano letters vol. 17,10 (2017): 6056-6061. doi: https://doi.org/10.1021/acs.nanolett.7b02471
Popescu A, Younts RA, Hoffman B, McAfee T, Dougherty DB, Ade HW, Gundogdu K, Bondarev IV. Monitoring Charge Separation Processes in Quasi-One-Dimensional Organic Crystalline Structures. Nano Lett. 2017 Oct 11;17(10):6056-6061. doi: 10.1021/acs.nanolett.7b02471. Epub 2017 Sep 11. PMID: 28873308.
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Spinal Manipulative Therapy for Chronic Lower Back Pain in Older Veterans: A Prospective, Randomized, Placebo-Controlled Trial.

Geriatric orthopaedic surgery & rehabilitation

Dougherty PE, Karuza J, Dunn AS, Savino D, Katz P.
PMID: 26246937
Geriatr Orthop Surg Rehabil. 2014 Dec;5(4):154-64. doi: 10.1177/2151458514544956.

INTRODUCTION: Chronic lower back pain (CLBP) is problematic in older veterans. Spinal manipulative therapy (SMT) is commonly utilized for CLBP in older adults, yet there are few randomized placebo-controlled trials evaluating SMT.METHODS: The purpose of the study was to...

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Dougherty PE, Karuza J, Dunn AS, et al. Spinal Manipulative Therapy for Chronic Lower Back Pain in Older Veterans: A Prospective, Randomized, Placebo-Controlled Trial. Geriatr Orthop Surg Rehabil. 2014;5(4):154-64doi: 10.1177/2151458514544956.
Dougherty, P. E., Karuza, J., Dunn, A. S., Savino, D., & Katz, P. (2014). Spinal Manipulative Therapy for Chronic Lower Back Pain in Older Veterans: A Prospective, Randomized, Placebo-Controlled Trial. Geriatric orthopaedic surgery & rehabilitation, 5(4), 154-64. https://doi.org/10.1177/2151458514544956
Dougherty, Paul E, et al. "Spinal Manipulative Therapy for Chronic Lower Back Pain in Older Veterans: A Prospective, Randomized, Placebo-Controlled Trial." Geriatric orthopaedic surgery & rehabilitation vol. 5,4 (2014): 154-64. doi: https://doi.org/10.1177/2151458514544956
Dougherty PE, Karuza J, Dunn AS, Savino D, Katz P. Spinal Manipulative Therapy for Chronic Lower Back Pain in Older Veterans: A Prospective, Randomized, Placebo-Controlled Trial. Geriatr Orthop Surg Rehabil. 2014 Dec;5(4):154-64. doi: 10.1177/2151458514544956. PMID: 26246937; PMCID: PMC4252156.
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Quantitative analysis of the myelin g-ratio from electron microscopy images of the macaque corpus callosum.

Data in brief

Stikov N, Campbell JS, Stroh T, Lavelée M, Frey S, Novek J, Nuara S, Ho MK, Bedell BJ, Dougherty RF, Leppert IR, Boudreau M, Narayanan S, Duval T, Cohen-Adad J, Picard PA, Gasecka A, Côté D, Pike GB.
PMID: 26217818
Data Brief. 2015 Jun 17;4:368-73. doi: 10.1016/j.dib.2015.05.019. eCollection 2015 Sep.

We provide a detailed morphometric analysis of eight transmission electron micrographs (TEMs) obtained from the corpus callosum of one cynomolgus macaque. The raw TEM images are included in the article, along with the distributions of the axon caliber and...

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Stikov N, Campbell JS, Stroh T, et al. Quantitative analysis of the myelin g-ratio from electron microscopy images of the macaque corpus callosum. Data Brief. 2015;4:368-73doi: 10.1016/j.dib.2015.05.019.
Stikov, N., Campbell, J. S., Stroh, T., Lavelée, M., Frey, S., Novek, J., Nuara, S., Ho, M. K., Bedell, B. J., Dougherty, R. F., Leppert, I. R., Boudreau, M., Narayanan, S., Duval, T., Cohen-Adad, J., Picard, P. A., Gasecka, A., Côté, D., & Pike, G. B. (2015). Quantitative analysis of the myelin g-ratio from electron microscopy images of the macaque corpus callosum. Data in brief, 4368-73. https://doi.org/10.1016/j.dib.2015.05.019
Stikov, Nikola, et al. "Quantitative analysis of the myelin g-ratio from electron microscopy images of the macaque corpus callosum." Data in brief vol. 4 (2015): 368-73. doi: https://doi.org/10.1016/j.dib.2015.05.019
Stikov N, Campbell JS, Stroh T, Lavelée M, Frey S, Novek J, Nuara S, Ho MK, Bedell BJ, Dougherty RF, Leppert IR, Boudreau M, Narayanan S, Duval T, Cohen-Adad J, Picard PA, Gasecka A, Côté D, Pike GB. Quantitative analysis of the myelin g-ratio from electron microscopy images of the macaque corpus callosum. Data Brief. 2015 Jun 17;4:368-73. doi: 10.1016/j.dib.2015.05.019. eCollection 2015 Sep. PMID: 26217818; PMCID: PMC4510539.
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The Cationminus signpi Interaction.

Chemical reviews

Ma JC, Dougherty DA.
PMID: 11851453
Chem Rev. 1997 Aug 05;97(5):1303-1324. doi: 10.1021/cr9603744.

No abstract available.

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Ma JC, Dougherty DA. The Cationminus signpi Interaction. Chem Rev. 1997;97(5):1303-1324doi: 10.1021/cr9603744.
Ma, J. C., & Dougherty, D. A. (1997). The Cationminus signpi Interaction. Chemical reviews, 97(5), 1303-1324. https://doi.org/10.1021/cr9603744
Ma, Jennifer C., and Dougherty, Dennis A.. "The Cationminus signpi Interaction." Chemical reviews vol. 97,5 (1997): 1303-1324. doi: https://doi.org/10.1021/cr9603744
Ma JC, Dougherty DA. The Cationminus signpi Interaction. Chem Rev. 1997 Aug 05;97(5):1303-1324. doi: 10.1021/cr9603744. PMID: 11851453.
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Showing 1 to 12 of 222 entries