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Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2

pipeline programs

Forsberg BO, Kimanius D, Lindahl E, Scheres SHW.
GSID: sb4nEjZ4N0oJ
D Kimanius, BO Forsberg, SHW Scheres, E Lindahl - elife, 2016 - elifesciences.org

By reaching near-atomic resolution for a wide range of specimens, single-particle cryo-EM structure determination is transforming structural biology. However, the necessary …

Surgery in district hospitals in rural Uganda-indications, interventions, and outcomes.

Lancet (London, England)

Löfgren J, Kadobera D, Forsberg BC, Mulowooza J, Wladis A, Nordin P.
PMID: 26313064
Lancet. 2015 Apr 27;385:S18. doi: 10.1016/S0140-6736(15)60813-3. Epub 2015 Apr 26.

BACKGROUND: There is a vast unmet need for surgical interventions in resource scarce settings. The poorest 2 billion people share 3·5% of the world's operations. The highest burden of surgical disease is seen in Africa where surgery could avert...

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Löfgren J, Kadobera D, Forsberg BC, et al. Surgery in district hospitals in rural Uganda-indications, interventions, and outcomes. Lancet. 2015;385:S18doi: 10.1016/S0140-6736(15)60813-3.
Löfgren, J., Kadobera, D., Forsberg, B. C., Mulowooza, J., Wladis, A., & Nordin, P. (2015). Surgery in district hospitals in rural Uganda-indications, interventions, and outcomes. Lancet (London, England), 385S18. https://doi.org/10.1016/S0140-6736(15)60813-3
Löfgren, Jenny, et al. "Surgery in district hospitals in rural Uganda-indications, interventions, and outcomes." Lancet (London, England) vol. 385 (2015): S18. doi: https://doi.org/10.1016/S0140-6736(15)60813-3
Löfgren J, Kadobera D, Forsberg BC, Mulowooza J, Wladis A, Nordin P. Surgery in district hospitals in rural Uganda-indications, interventions, and outcomes. Lancet. 2015 Apr 27;385:S18. doi: 10.1016/S0140-6736(15)60813-3. Epub 2015 Apr 26. PMID: 26313064.
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Correlates of mobile phone use in HIV care: Results from a cross-sectional study in South Africa.

Preventive medicine reports

Madhvani N, Longinetti E, Santacatterina M, Forsberg BC, El-Khatib Z.
PMID: 26844111
Prev Med Rep. 2015 Jun 14;2:512-6. doi: 10.1016/j.pmedr.2015.06.010. eCollection 2015.

OBJECTIVE: Human Immunodeficiency Virus (HIV) is a major disease burden worldwide. Challenges include retaining patients in care and optimizing adherence to Antiretroviral Therapy (ART). One possible solution is using mobile phones as reminder tools. The main aim of our...

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Madhvani N, Longinetti E, Santacatterina M, et al. Correlates of mobile phone use in HIV care: Results from a cross-sectional study in South Africa. Prev Med Rep. 2015;2:512-6doi: 10.1016/j.pmedr.2015.06.010.
Madhvani, N., Longinetti, E., Santacatterina, M., Forsberg, B. C., & El-Khatib, Z. (2015). Correlates of mobile phone use in HIV care: Results from a cross-sectional study in South Africa. Preventive medicine reports, 2512-6. https://doi.org/10.1016/j.pmedr.2015.06.010
Madhvani, Naieya, et al. "Correlates of mobile phone use in HIV care: Results from a cross-sectional study in South Africa." Preventive medicine reports vol. 2 (2015): 512-6. doi: https://doi.org/10.1016/j.pmedr.2015.06.010
Madhvani N, Longinetti E, Santacatterina M, Forsberg BC, El-Khatib Z. Correlates of mobile phone use in HIV care: Results from a cross-sectional study in South Africa. Prev Med Rep. 2015 Jun 14;2:512-6. doi: 10.1016/j.pmedr.2015.06.010. eCollection 2015. PMID: 26844111; PMCID: PMC4721279.
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Pitfalls, Errors, and Unintended Consequences in Musculoskeletal Oncology: How They Occur and How They Can Be Avoided.

JBJS reviews

Potter BK, Forsberg JA, Conway S, Morris CD, Temple HT.
PMID: 27490398
JBJS Rev. 2013 Nov 19;1(1). doi: 10.2106/JBJS.RVW.M.00028.

No abstract available.

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Potter BK, Forsberg JA, Conway S, et al. Pitfalls, Errors, and Unintended Consequences in Musculoskeletal Oncology: How They Occur and How They Can Be Avoided. JBJS Rev. 2013;1(1)doi: 10.2106/JBJS.RVW.M.00028.
Potter, B. K., Forsberg, J. A., Conway, S., Morris, C. D., & Temple, H. T. (2013). Pitfalls, Errors, and Unintended Consequences in Musculoskeletal Oncology: How They Occur and How They Can Be Avoided. JBJS reviews, 1(1), . https://doi.org/10.2106/JBJS.RVW.M.00028
Potter, Benjamin K, et al. "Pitfalls, Errors, and Unintended Consequences in Musculoskeletal Oncology: How They Occur and How They Can Be Avoided." JBJS reviews vol. 1,1 (2013). doi: https://doi.org/10.2106/JBJS.RVW.M.00028
Potter BK, Forsberg JA, Conway S, Morris CD, Temple HT. Pitfalls, Errors, and Unintended Consequences in Musculoskeletal Oncology: How They Occur and How They Can Be Avoided. JBJS Rev. 2013 Nov 19;1(1). doi: 10.2106/JBJS.RVW.M.00028. PMID: 27490398.
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Production of asymmetric hybrids between Arabidopsis thaliana and Brassica napus utilizing an efficient protoplast culture system.

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik

Yamagishi H, Landgren M, Forsberg J, Glimelius K.
PMID: 12582600
Theor Appl Genet. 2002 May;104(6):959-964. doi: 10.1007/s00122-002-0881-9. Epub 2002 Apr 06.

Application of the protoplast culture method developed for Brassica protoplasts to protoplasts of Arabidopsis thaliana has increased the opportunities for interspecific hybridizations involving Arabidopsis. A more-efficient and much-simpler method was established compared to the earlier-reported protocol developed for A....

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Yamagishi H, Landgren M, Forsberg J, et al. Production of asymmetric hybrids between Arabidopsis thaliana and Brassica napus utilizing an efficient protoplast culture system. Theor Appl Genet. 2002;104(6):959-964doi: 10.1007/s00122-002-0881-9.
Yamagishi, H., Landgren, M., Forsberg, J., & Glimelius, K. (2002). Production of asymmetric hybrids between Arabidopsis thaliana and Brassica napus utilizing an efficient protoplast culture system. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 104(6), 959-964. https://doi.org/10.1007/s00122-002-0881-9
Yamagishi, H., et al. "Production of asymmetric hybrids between Arabidopsis thaliana and Brassica napus utilizing an efficient protoplast culture system." TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik vol. 104,6 (2002): 959-964. doi: https://doi.org/10.1007/s00122-002-0881-9
Yamagishi H, Landgren M, Forsberg J, Glimelius K. Production of asymmetric hybrids between Arabidopsis thaliana and Brassica napus utilizing an efficient protoplast culture system. Theor Appl Genet. 2002 May;104(6):959-964. doi: 10.1007/s00122-002-0881-9. Epub 2002 Apr 06. PMID: 12582600.
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Features of Fibrobacter intestinalis DR7 mutant which is impaired with its ability to adhere to cellulose.

Anaerobe

Miron J, Forsberg CW.
PMID: 16887622
Anaerobe. 1998 Feb;4(1):35-43. doi: 10.1006/anae.1997.0132.

A spontaneous adhesion-defective mutant (DR7-M) of Fibrobacter intestinalis DR7 was isolated which was capable of growing on glucose and cellobiose, but impaired in its capacity to degrade cellulose. Levels of enzyme activities were determined in solubilized fractions of DR7...

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Miron J, Forsberg CW. Features of Fibrobacter intestinalis DR7 mutant which is impaired with its ability to adhere to cellulose. Anaerobe. 1998;4(1):35-43doi: 10.1006/anae.1997.0132.
Miron, J., & Forsberg, C. W. (1998). Features of Fibrobacter intestinalis DR7 mutant which is impaired with its ability to adhere to cellulose. Anaerobe, 4(1), 35-43. https://doi.org/10.1006/anae.1997.0132
Miron, J, and Forsberg, C W. "Features of Fibrobacter intestinalis DR7 mutant which is impaired with its ability to adhere to cellulose." Anaerobe vol. 4,1 (1998): 35-43. doi: https://doi.org/10.1006/anae.1997.0132
Miron J, Forsberg CW. Features of Fibrobacter intestinalis DR7 mutant which is impaired with its ability to adhere to cellulose. Anaerobe. 1998 Feb;4(1):35-43. doi: 10.1006/anae.1997.0132. PMID: 16887622.
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The release of fermentable carbohydrate from peat by steam explosion and its use in the microbial production of solvents.

Biotechnology and bioengineering

Forsberg CW, Schellhorn HE, Gibbins LN, Maine F, Mason E.
PMID: 18555312
Biotechnol Bioeng. 1986 Feb;28(2):176-84. doi: 10.1002/bit.260280205.

Steam treatment of peat at 200 degrees C for 3 min, followed by instantaneous decompression (steam explosion), solubilized up to 28% of the dry matter. Seventy-five percent of the solubilized material was carbohydrate, 33% of which was composed of...

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Forsberg CW, Schellhorn HE, Gibbins LN, et al. The release of fermentable carbohydrate from peat by steam explosion and its use in the microbial production of solvents. Biotechnol Bioeng. 1986;28(2):176-84doi: 10.1002/bit.260280205.
Forsberg, C. W., Schellhorn, H. E., Gibbins, L. N., Maine, F., & Mason, E. (1986). The release of fermentable carbohydrate from peat by steam explosion and its use in the microbial production of solvents. Biotechnology and bioengineering, 28(2), 176-84. https://doi.org/10.1002/bit.260280205
Forsberg, C W, et al. "The release of fermentable carbohydrate from peat by steam explosion and its use in the microbial production of solvents." Biotechnology and bioengineering vol. 28,2 (1986): 176-84. doi: https://doi.org/10.1002/bit.260280205
Forsberg CW, Schellhorn HE, Gibbins LN, Maine F, Mason E. The release of fermentable carbohydrate from peat by steam explosion and its use in the microbial production of solvents. Biotechnol Bioeng. 1986 Feb;28(2):176-84. doi: 10.1002/bit.260280205. PMID: 18555312.
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Private and public health care in rural areas of Uganda.

BMC international health and human rights

Konde-Lule J, Gitta SN, Lindfors A, Okuonzi S, Onama VO, Forsberg BC.
PMID: 21106099
BMC Int Health Hum Rights. 2010 Nov 24;10:29. doi: 10.1186/1472-698X-10-29.

BACKGROUND: In many low and middle income countries, the private sector is increasingly becoming an important source of health care, filling gaps where no or little public health care is available. However, knowledge on the private sector providers is...

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Konde-Lule J, Gitta SN, Lindfors A, et al. Private and public health care in rural areas of Uganda. BMC Int Health Hum Rights. 2010;10:29doi: 10.1186/1472-698X-10-29.
Konde-Lule, J., Gitta, S. N., Lindfors, A., Okuonzi, S., Onama, V. O., & Forsberg, B. C. (2010). Private and public health care in rural areas of Uganda. BMC international health and human rights, 1029. https://doi.org/10.1186/1472-698X-10-29
Konde-Lule, Joseph, et al. "Private and public health care in rural areas of Uganda." BMC international health and human rights vol. 10 (2010): 29. doi: https://doi.org/10.1186/1472-698X-10-29
Konde-Lule J, Gitta SN, Lindfors A, Okuonzi S, Onama VO, Forsberg BC. Private and public health care in rural areas of Uganda. BMC Int Health Hum Rights. 2010 Nov 24;10:29. doi: 10.1186/1472-698X-10-29. PMID: 21106099; PMCID: PMC3003635.
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Xylanolytic Activity of Clostridium acetobutylicum.

Applied and environmental microbiology

Lee SF, Forsberg CW, Gibbins LN.
PMID: 16346904
Appl Environ Microbiol. 1985 Oct;50(4):1068-76. doi: 10.1128/aem.50.4.1068-1076.1985.

Of 20 strains of Clostridium spp. screened, 17 hydrolyzed larch wood xylan. Two strains of Clostridium acetobutylicum, NRRL B527 and ATCC 824, hydrolyzed xylan but failed to grow on solid media with larch xylan as the sole carbon source;...

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Lee SF, Forsberg CW, Gibbins LN. Xylanolytic Activity of Clostridium acetobutylicum. Appl Environ Microbiol. 1985;50(4):1068-76doi: 10.1128/aem.50.4.1068-1076.1985.
Lee, S. F., Forsberg, C. W., & Gibbins, L. N. (1985). Xylanolytic Activity of Clostridium acetobutylicum. Applied and environmental microbiology, 50(4), 1068-76. https://doi.org/10.1128/aem.50.4.1068-1076.1985
Lee, S F, et al. "Xylanolytic Activity of Clostridium acetobutylicum." Applied and environmental microbiology vol. 50,4 (1985): 1068-76. doi: https://doi.org/10.1128/aem.50.4.1068-1076.1985
Lee SF, Forsberg CW, Gibbins LN. Xylanolytic Activity of Clostridium acetobutylicum. Appl Environ Microbiol. 1985 Oct;50(4):1068-76. doi: 10.1128/aem.50.4.1068-1076.1985. PMID: 16346904; PMCID: PMC291795.
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Treatment patterns of childhood diarrhoea in rural Uganda: a cross-sectional survey.

BMC international health and human rights

Löfgren J, Tao W, Larsson E, Kyakulaga F, Forsberg BC.
PMID: 23009176
BMC Int Health Hum Rights. 2012 Sep 25;12:19. doi: 10.1186/1472-698X-12-19.

BACKGROUND: Diarrhoea is the second leading cause of death in children under five accounting for 1.8 million deaths yearly. Despite global efforts to reduce diarrhoea mortality through promotion of proper case management, there is still room for ample improvement....

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Löfgren J, Tao W, Larsson E, et al. Treatment patterns of childhood diarrhoea in rural Uganda: a cross-sectional survey. BMC Int Health Hum Rights. 2012;12:19doi: 10.1186/1472-698X-12-19.
Löfgren, J., Tao, W., Larsson, E., Kyakulaga, F., & Forsberg, B. C. (2012). Treatment patterns of childhood diarrhoea in rural Uganda: a cross-sectional survey. BMC international health and human rights, 1219. https://doi.org/10.1186/1472-698X-12-19
Löfgren, Jenny, et al. "Treatment patterns of childhood diarrhoea in rural Uganda: a cross-sectional survey." BMC international health and human rights vol. 12 (2012): 19. doi: https://doi.org/10.1186/1472-698X-12-19
Löfgren J, Tao W, Larsson E, Kyakulaga F, Forsberg BC. Treatment patterns of childhood diarrhoea in rural Uganda: a cross-sectional survey. BMC Int Health Hum Rights. 2012 Sep 25;12:19. doi: 10.1186/1472-698X-12-19. PMID: 23009176; PMCID: PMC3489860.
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Wide-angle narrow-band interference filter photography.

Applied optics

Best GT, Forsberg CA.
PMID: 20125366
Appl Opt. 1973 Apr 01;12(4). doi: 10.1364/AO.12.0891_1.

No abstract available.

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Best GT, Forsberg CA. Wide-angle narrow-band interference filter photography. Appl Opt. 1973;12(4)doi: 10.1364/AO.12.0891_1.
Best, G. T., & Forsberg, C. A. (1973). Wide-angle narrow-band interference filter photography. Applied optics, 12(4), . https://doi.org/10.1364/AO.12.0891_1
Best, G T, and Forsberg, C A. "Wide-angle narrow-band interference filter photography." Applied optics vol. 12,4 (1973). doi: https://doi.org/10.1364/AO.12.0891_1
Best GT, Forsberg CA. Wide-angle narrow-band interference filter photography. Appl Opt. 1973 Apr 01;12(4). doi: 10.1364/AO.12.0891_1. PMID: 20125366.
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Blast injuries and heterotopic ossification.

Bone & joint research

Alfieri KA, Forsberg JA, Potter BK.
PMID: 23610689
Bone Joint Res. 2012 Aug 01;1(8):192-7. doi: 10.1302/2046-3758.18.2000102. Print 2012 Aug.

Heterotopic ossification (HO) is perhaps the single most significant obstacle to independence, functional mobility, and return to duty for combat-injured veterans of Operation Enduring Freedom and Operation Iraqi Freedom. Recent research into the cause(s) of HO has been driven...

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Alfieri KA, Forsberg JA, Potter BK. Blast injuries and heterotopic ossification. Bone Joint Res. 2012;1(8):192-7doi: 10.1302/2046-3758.18.2000102.
Alfieri, K. A., Forsberg, J. A., & Potter, B. K. (2012). Blast injuries and heterotopic ossification. Bone & joint research, 1(8), 192-7. https://doi.org/10.1302/2046-3758.18.2000102
Alfieri, K A, et al. "Blast injuries and heterotopic ossification." Bone & joint research vol. 1,8 (2012): 192-7. doi: https://doi.org/10.1302/2046-3758.18.2000102
Alfieri KA, Forsberg JA, Potter BK. Blast injuries and heterotopic ossification. Bone Joint Res. 2012 Aug 01;1(8):192-7. doi: 10.1302/2046-3758.18.2000102. Print 2012 Aug. PMID: 23610689; PMCID: PMC3626224.
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Showing 1 to 12 of 172 entries