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Logical network of genotoxic stress-induced NF-κB signal transduction predicts putative target structures for therapeutic intervention strategies.

Advances and applications in bioinformatics and chemistry : AABC

Poltz R, Franke R, Schweitzer K, Klamt S, Gilles ED, Naumann M.
PMID: 21918620
Adv Appl Bioinform Chem. 2009;2:125-38. doi: 10.2147/aabc.s8211. Epub 2009 Dec 03.

Genotoxic stress is induced by a broad range of DNA-damaging agents and could lead to a variety of human diseases including cancer. DNA damage is also therapeutically induced for cancer treatment with the aim to eliminate tumor cells. However,...

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Poltz R, Franke R, Schweitzer K, et al. Logical network of genotoxic stress-induced NF-κB signal transduction predicts putative target structures for therapeutic intervention strategies. Adv Appl Bioinform Chem. 2009;2:125-38doi: 10.2147/aabc.s8211.
Poltz, R., Franke, R., Schweitzer, K., Klamt, S., Gilles, E. D., & Naumann, M. (2009). Logical network of genotoxic stress-induced NF-κB signal transduction predicts putative target structures for therapeutic intervention strategies. Advances and applications in bioinformatics and chemistry : AABC, 2125-38. https://doi.org/10.2147/aabc.s8211
Poltz, Rainer, et al. "Logical network of genotoxic stress-induced NF-κB signal transduction predicts putative target structures for therapeutic intervention strategies." Advances and applications in bioinformatics and chemistry : AABC vol. 2 (2009): 125-38. doi: https://doi.org/10.2147/aabc.s8211
Poltz R, Franke R, Schweitzer K, Klamt S, Gilles ED, Naumann M. Logical network of genotoxic stress-induced NF-κB signal transduction predicts putative target structures for therapeutic intervention strategies. Adv Appl Bioinform Chem. 2009;2:125-38. doi: 10.2147/aabc.s8211. Epub 2009 Dec 03. PMID: 21918620; PMCID: PMC3169943.
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Single and Twofold Metal- and Reagent-Free Anodic C-C Cross-Coupling of Phenols with Thiophenes.

Angewandte Chemie (International ed. in English)

Wiebe A, Lips S, Schollmeyer D, Franke R, Waldvogel SR.
PMID: 28967700
Angew Chem Int Ed Engl. 2017 Nov 13;56(46):14727-14731. doi: 10.1002/anie.201708946. Epub 2017 Oct 20.

The first electrochemical dehydrogenative C-C cross-coupling of thiophenes with phenols has been realized. This sustainable and very simple to perform anodic coupling reaction enables access to two classes of compounds of significant interest. The scope for electrochemical C-H-activating cross-coupling...

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Wiebe A, Lips S, Schollmeyer D, et al. Single and Twofold Metal- and Reagent-Free Anodic C-C Cross-Coupling of Phenols with Thiophenes. Angew Chem Int Ed Engl. 2017;56(46):14727-14731doi: 10.1002/anie.201708946.
Wiebe, A., Lips, S., Schollmeyer, D., Franke, R., & Waldvogel, S. R. (2017). Single and Twofold Metal- and Reagent-Free Anodic C-C Cross-Coupling of Phenols with Thiophenes. Angewandte Chemie (International ed. in English), 56(46), 14727-14731. https://doi.org/10.1002/anie.201708946
Wiebe, Anton, et al. "Single and Twofold Metal- and Reagent-Free Anodic C-C Cross-Coupling of Phenols with Thiophenes." Angewandte Chemie (International ed. in English) vol. 56,46 (2017): 14727-14731. doi: https://doi.org/10.1002/anie.201708946
Wiebe A, Lips S, Schollmeyer D, Franke R, Waldvogel SR. Single and Twofold Metal- and Reagent-Free Anodic C-C Cross-Coupling of Phenols with Thiophenes. Angew Chem Int Ed Engl. 2017 Nov 13;56(46):14727-14731. doi: 10.1002/anie.201708946. Epub 2017 Oct 20. PMID: 28967700.
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Smallest Bimetallic CoPt.

The journal of physical chemistry letters

Karmaoui M, Amaral JS, Lajaunie L, Puliyalil H, Tobaldi DM, Pullar RC, Labrincha JA, Arenal R, Cvelbar U.
PMID: 27676169
J Phys Chem Lett. 2016 Oct 20;7(20):4039-4046. doi: 10.1021/acs.jpclett.6b01768. Epub 2016 Sep 29.

We present for the first time a nonaqueous sol-gel route to produce ultrasmall (

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Karmaoui M, Amaral JS, Lajaunie L, et al. Smallest Bimetallic CoPt. J Phys Chem Lett. 2016;7(20):4039-4046doi: 10.1021/acs.jpclett.6b01768.
Karmaoui, M., Amaral, J. S., Lajaunie, L., Puliyalil, H., Tobaldi, D. M., Pullar, R. C., Labrincha, J. A., Arenal, R., & Cvelbar, U. (2016). Smallest Bimetallic CoPt. The journal of physical chemistry letters, 7(20), 4039-4046. https://doi.org/10.1021/acs.jpclett.6b01768
Karmaoui, Mohamed, et al. "Smallest Bimetallic CoPt." The journal of physical chemistry letters vol. 7,20 (2016): 4039-4046. doi: https://doi.org/10.1021/acs.jpclett.6b01768
Karmaoui M, Amaral JS, Lajaunie L, Puliyalil H, Tobaldi DM, Pullar RC, Labrincha JA, Arenal R, Cvelbar U. Smallest Bimetallic CoPt. J Phys Chem Lett. 2016 Oct 20;7(20):4039-4046. doi: 10.1021/acs.jpclett.6b01768. Epub 2016 Sep 29. PMID: 27676169.
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Self-assembly protocol design for periodic multicomponent structures.

Soft matter

Jacobs WM, Frenkel D.
PMID: 26404794
Soft Matter. 2015 Dec 14;11(46):8930-8. doi: 10.1039/c5sm01841b.

Assembling molecular superstructures with many distinct components will allow unprecedented control over morphology at the nanoscale. Recently, this approach has been used to assemble periodic structures with precisely defined features, such as repeating arrays of pores and channels, using...

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Jacobs WM, Frenkel D. Self-assembly protocol design for periodic multicomponent structures. Soft Matter. 2015;11(46):8930-8doi: 10.1039/c5sm01841b.
Jacobs, W. M., & Frenkel, D. (2015). Self-assembly protocol design for periodic multicomponent structures. Soft matter, 11(46), 8930-8. https://doi.org/10.1039/c5sm01841b
Jacobs, William M, and Frenkel, Daan. "Self-assembly protocol design for periodic multicomponent structures." Soft matter vol. 11,46 (2015): 8930-8. doi: https://doi.org/10.1039/c5sm01841b
Jacobs WM, Frenkel D. Self-assembly protocol design for periodic multicomponent structures. Soft Matter. 2015 Dec 14;11(46):8930-8. doi: 10.1039/c5sm01841b. PMID: 26404794.
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Surveillance of Wildlife Diseases: Lessons from the West Nile Virus Outbreak.

Microbiology spectrum

McNamara TS, McLean RG, Saito EK, Wolfe PL, Gillin CM, Fischer JR, Ellis JC, French R, Martin PP, Schuler KL, McRuer D, Clark EE, Hines MK, Marsh C, Szewczyk V, Sladky K, Yon L, Hannant D, Siemer WF.
PMID: 26184818
Microbiol Spectr. 2013 Oct;1(1). doi: 10.1128/microbiolspec.OH-0014-2012.

The West Nile virus outbreak of 1999 revealed many weaknesses in this country's ability to respond to disease threats that cross species lines. There were issues of poor communication among human, domestic animal, and wildlife health agencies that delayed...

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McNamara TS, McLean RG, Saito EK, et al. Surveillance of Wildlife Diseases: Lessons from the West Nile Virus Outbreak. Microbiol Spectr. 2013;1(1)doi: 10.1128/microbiolspec.OH-0014-2012.
McNamara, T. S., McLean, R. G., Saito, E. K., Wolfe, P. L., Gillin, C. M., Fischer, J. R., Ellis, J. C., French, R., Martin, P. P., Schuler, K. L., McRuer, D., Clark, E. E., Hines, M. K., Marsh, C., Szewczyk, V., Sladky, K., Yon, L., Hannant, D., & Siemer, W. F. (2013). Surveillance of Wildlife Diseases: Lessons from the West Nile Virus Outbreak. Microbiology spectrum, 1(1), . https://doi.org/10.1128/microbiolspec.OH-0014-2012
McNamara, Tracey S, et al. "Surveillance of Wildlife Diseases: Lessons from the West Nile Virus Outbreak." Microbiology spectrum vol. 1,1 (2013). doi: https://doi.org/10.1128/microbiolspec.OH-0014-2012
McNamara TS, McLean RG, Saito EK, Wolfe PL, Gillin CM, Fischer JR, Ellis JC, French R, Martin PP, Schuler KL, McRuer D, Clark EE, Hines MK, Marsh C, Szewczyk V, Sladky K, Yon L, Hannant D, Siemer WF. Surveillance of Wildlife Diseases: Lessons from the West Nile Virus Outbreak. Microbiol Spectr. 2013 Oct;1(1). doi: 10.1128/microbiolspec.OH-0014-2012. PMID: 26184818.
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Computational methodology for solubility prediction: Application to the sparingly soluble solutes.

The Journal of chemical physics

Li L, Totton T, Frenkel D.
PMID: 28595415
J Chem Phys. 2017 Jun 07;146(21):214110. doi: 10.1063/1.4983754.

The solubility of a crystalline substance in the solution can be estimated from its absolute solid free energy and excess solvation free energy. Here, we present a numerical method, which enables convenient solubility estimation of general molecular crystals at...

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Li L, Totton T, Frenkel D. Computational methodology for solubility prediction: Application to the sparingly soluble solutes. J Chem Phys. 2017;146(21):214110doi: 10.1063/1.4983754.
Li, L., Totton, T., & Frenkel, D. (2017). Computational methodology for solubility prediction: Application to the sparingly soluble solutes. The Journal of chemical physics, 146(21), 214110. https://doi.org/10.1063/1.4983754
Li, Lunna, et al. "Computational methodology for solubility prediction: Application to the sparingly soluble solutes." The Journal of chemical physics vol. 146,21 (2017): 214110. doi: https://doi.org/10.1063/1.4983754
Li L, Totton T, Frenkel D. Computational methodology for solubility prediction: Application to the sparingly soluble solutes. J Chem Phys. 2017 Jun 07;146(21):214110. doi: 10.1063/1.4983754. PMID: 28595415.
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Environmental and physiological effects on grouping of drought-tolerant and susceptible rice varieties related to rice (Oryza sativa) root hydraulics under drought.

Annals of botany

Henry A, Wehler R, Grondin A, Franke R, Quintana M.
PMID: 27192712
Ann Bot. 2016 Oct 01;118(4):711-724. doi: 10.1093/aob/mcw068.

Background and Aims Root hydraulic limitations (i.e. intra-plant restrictions to water movement) may be related to crop performance under drought, and groupings in the hydraulic function of drought-tolerant and drought-susceptible rice (Oryza sativa) varieties have been previously reported. This...

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Henry A, Wehler R, Grondin A, et al. Environmental and physiological effects on grouping of drought-tolerant and susceptible rice varieties related to rice (Oryza sativa) root hydraulics under drought. Ann Bot. 2016;118(4):711-724doi: 10.1093/aob/mcw068.
Henry, A., Wehler, R., Grondin, A., Franke, R., & Quintana, M. (2016). Environmental and physiological effects on grouping of drought-tolerant and susceptible rice varieties related to rice (Oryza sativa) root hydraulics under drought. Annals of botany, 118(4), 711-724. https://doi.org/10.1093/aob/mcw068
Henry, Amelia, et al. "Environmental and physiological effects on grouping of drought-tolerant and susceptible rice varieties related to rice (Oryza sativa) root hydraulics under drought." Annals of botany vol. 118,4 (2016): 711-724. doi: https://doi.org/10.1093/aob/mcw068
Henry A, Wehler R, Grondin A, Franke R, Quintana M. Environmental and physiological effects on grouping of drought-tolerant and susceptible rice varieties related to rice (Oryza sativa) root hydraulics under drought. Ann Bot. 2016 Oct 01;118(4):711-724. doi: 10.1093/aob/mcw068. PMID: 27192712; PMCID: PMC5055623.
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Kinetics of formation of bile salt micelles from coarse-grained Langevin dynamics simulations.

Soft matter

Vila Verde A, Frenkel D.
PMID: 27199094
Soft Matter. 2016 Jun 21;12(23):5172-9. doi: 10.1039/c6sm00763e. Epub 2016 May 20.

We examine the mechanism of formation of micelles of dihydroxy bile salts using a coarse-grained, implicit solvent model and Langevin dynamics simulations. We find that bile salt micelles primarily form via addition and removal of monomers, similarly to surfactants...

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Vila Verde A, Frenkel D. Kinetics of formation of bile salt micelles from coarse-grained Langevin dynamics simulations. Soft Matter. 2016;12(23):5172-9doi: 10.1039/c6sm00763e.
Vila Verde, A., & Frenkel, D. (2016). Kinetics of formation of bile salt micelles from coarse-grained Langevin dynamics simulations. Soft matter, 12(23), 5172-9. https://doi.org/10.1039/c6sm00763e
Vila Verde, Ana, and Frenkel, Daan. "Kinetics of formation of bile salt micelles from coarse-grained Langevin dynamics simulations." Soft matter vol. 12,23 (2016): 5172-9. doi: https://doi.org/10.1039/c6sm00763e
Vila Verde A, Frenkel D. Kinetics of formation of bile salt micelles from coarse-grained Langevin dynamics simulations. Soft Matter. 2016 Jun 21;12(23):5172-9. doi: 10.1039/c6sm00763e. Epub 2016 May 20. PMID: 27199094.
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Synthesis of Nanoparticle Assemblies: general discussion.

Faraday discussions

Som M, Majumdar S, Bachhar N, Kumaraswamy G, Pavan Kumar GV, Manoharan VN, Kumar S, Basavaraj MG, Kulkarni S, Bandyopadhyay R, Punnathanam S, Medhi H, Srivastav A, Frenkel D, Tripathy M, Eiser E, Gonzalez-Garcia L, Roy Chowdhury P, Singh J, Sridurai V, Edwards A, Prasad BL, Singh AK, Bockstaller M, John NS, Seth J, Misra M, Chakravarty C, Shinde V, Bandyopadhyaya R, Jestin J, Poojari R, Kotov N, Gang O, Karim A, Ju-Nam Y, Granick S, Chervinskii S, Tao A.
PMID: 27042810
Faraday Discuss. 2016;186:123-52. doi: 10.1039/C6FD90001A.

No abstract available.

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Som M, Majumdar S, Bachhar N, et al. Synthesis of Nanoparticle Assemblies: general discussion. Faraday Discuss. 2016;186:123-52doi: 10.1039/C6FD90001A.
Som, M., Majumdar, S., Bachhar, N., Kumaraswamy, G., Pavan Kumar, G. V., Manoharan, V. N., Kumar, S., Basavaraj, M. G., Kulkarni, S., Bandyopadhyay, R., Punnathanam, S., Medhi, H., Srivastav, A., Frenkel, D., Tripathy, M., Eiser, E., Gonzalez-Garcia, L., Roy Chowdhury, P., Singh, J., Sridurai, V., Edwards, A., Prasad, B. L., Singh, A. K., Bockstaller, M., John, N. S., Seth, J., Misra, M., Chakravarty, C., Shinde, V., Bandyopadhyaya, R., Jestin, J., Poojari, R., Kotov, N., Gang, O., Karim, A., Ju-Nam, Y., Granick, S., Chervinskii, S., & Tao, A. (2016). Synthesis of Nanoparticle Assemblies: general discussion. Faraday discussions, 186123-52. https://doi.org/10.1039/C6FD90001A
Som, Madhura, et al. "Synthesis of Nanoparticle Assemblies: general discussion." Faraday discussions vol. 186 (2016): 123-52. doi: https://doi.org/10.1039/C6FD90001A
Som M, Majumdar S, Bachhar N, Kumaraswamy G, Pavan Kumar GV, Manoharan VN, Kumar S, Basavaraj MG, Kulkarni S, Bandyopadhyay R, Punnathanam S, Medhi H, Srivastav A, Frenkel D, Tripathy M, Eiser E, Gonzalez-Garcia L, Roy Chowdhury P, Singh J, Sridurai V, Edwards A, Prasad BL, Singh AK, Bockstaller M, John NS, Seth J, Misra M, Chakravarty C, Shinde V, Bandyopadhyaya R, Jestin J, Poojari R, Kotov N, Gang O, Karim A, Ju-Nam Y, Granick S, Chervinskii S, Tao A. Synthesis of Nanoparticle Assemblies: general discussion. Faraday Discuss. 2016;186:123-52. doi: 10.1039/C6FD90001A. PMID: 27042810.
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Engaging Communities in Research on Cumulative Risk and Social Stress-Environment Interactions: Lessons Learned from EPA's STAR Program.

Environmental justice (Print)

Payne-Sturges DC, Korfmacher KS, Cory-Slechta DA, Jimenez M, Symanski E, Carr Shmool JL, Dotson-Newman O, Clougherty JE, French R, Levy JI, Laumbach R, Rodgers K, Bongiovanni R, Scammell MK.
PMID: 27688822
Environ Justice. 2015 Dec 01;8(6):203-212. doi: 10.1089/env.2015.0025.

Studies have documented cumulative health effects of chemical and nonchemical exposures, particularly chronic environmental and social stressors. Environmental justice groups have advocated for community participation in research that assesses how these interactions contribute to health disparities experienced by low-income...

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Payne-Sturges DC, Korfmacher KS, Cory-Slechta DA, et al. Engaging Communities in Research on Cumulative Risk and Social Stress-Environment Interactions: Lessons Learned from EPA's STAR Program. Environ Justice. 2015;8(6):203-212doi: 10.1089/env.2015.0025.
Payne-Sturges, D. C., Korfmacher, K. S., Cory-Slechta, D. A., Jimenez, M., Symanski, E., Carr Shmool, J. L., Dotson-Newman, O., Clougherty, J. E., French, R., Levy, J. I., Laumbach, R., Rodgers, K., Bongiovanni, R., & Scammell, M. K. (2015). Engaging Communities in Research on Cumulative Risk and Social Stress-Environment Interactions: Lessons Learned from EPA's STAR Program. Environmental justice (Print), 8(6), 203-212. https://doi.org/10.1089/env.2015.0025
Payne-Sturges, Devon C, et al. "Engaging Communities in Research on Cumulative Risk and Social Stress-Environment Interactions: Lessons Learned from EPA's STAR Program." Environmental justice (Print) vol. 8,6 (2015): 203-212. doi: https://doi.org/10.1089/env.2015.0025
Payne-Sturges DC, Korfmacher KS, Cory-Slechta DA, Jimenez M, Symanski E, Carr Shmool JL, Dotson-Newman O, Clougherty JE, French R, Levy JI, Laumbach R, Rodgers K, Bongiovanni R, Scammell MK. Engaging Communities in Research on Cumulative Risk and Social Stress-Environment Interactions: Lessons Learned from EPA's STAR Program. Environ Justice. 2015 Dec 01;8(6):203-212. doi: 10.1089/env.2015.0025. PMID: 27688822; PMCID: PMC4981147.
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Rational design of molecularly imprinted polymers.

Soft matter

Curk T, Dobnikar J, Frenkel D.
PMID: 26452006
Soft Matter. 2016 Jan 07;12(1):35-44. doi: 10.1039/c5sm02144h.

Molecular imprinting is the process whereby a polymer matrix is cross-linked in the presence of molecules with surface sites that can bind selectively to certain ligands on the polymer. The cross-linking process endows the polymer matrix with a chemical...

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Curk T, Dobnikar J, Frenkel D. Rational design of molecularly imprinted polymers. Soft Matter. 2016;12(1):35-44doi: 10.1039/c5sm02144h.
Curk, T., Dobnikar, J., & Frenkel, D. (2016). Rational design of molecularly imprinted polymers. Soft matter, 12(1), 35-44. https://doi.org/10.1039/c5sm02144h
Curk, Tine, et al. "Rational design of molecularly imprinted polymers." Soft matter vol. 12,1 (2016): 35-44. doi: https://doi.org/10.1039/c5sm02144h
Curk T, Dobnikar J, Frenkel D. Rational design of molecularly imprinted polymers. Soft Matter. 2016 Jan 07;12(1):35-44. doi: 10.1039/c5sm02144h. PMID: 26452006.
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Erratum to: Anesthetic Selection and Disease-Free Survival Following Optimal Primary Cytoreductive Surgery for Stage III Epithelial Ovarian Cancer.

Annals of surgical oncology

Elias KM, Kang S, Liu X, Horowitz NS, Berkowitz RS, Frendl G.
PMID: 25821001
Ann Surg Oncol. 2015 Dec;22:S1611. doi: 10.1245/s10434-015-4542-z.

No abstract available.

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Elias KM, Kang S, Liu X, et al. Erratum to: Anesthetic Selection and Disease-Free Survival Following Optimal Primary Cytoreductive Surgery for Stage III Epithelial Ovarian Cancer. Ann Surg Oncol. 2015;22:S1611doi: 10.1245/s10434-015-4542-z.
Elias, K. M., Kang, S., Liu, X., Horowitz, N. S., Berkowitz, R. S., & Frendl, G. (2015). Erratum to: Anesthetic Selection and Disease-Free Survival Following Optimal Primary Cytoreductive Surgery for Stage III Epithelial Ovarian Cancer. Annals of surgical oncology, 22S1611. https://doi.org/10.1245/s10434-015-4542-z
Elias, Kevin M, et al. "Erratum to: Anesthetic Selection and Disease-Free Survival Following Optimal Primary Cytoreductive Surgery for Stage III Epithelial Ovarian Cancer." Annals of surgical oncology vol. 22 (2015): S1611. doi: https://doi.org/10.1245/s10434-015-4542-z
Elias KM, Kang S, Liu X, Horowitz NS, Berkowitz RS, Frendl G. Erratum to: Anesthetic Selection and Disease-Free Survival Following Optimal Primary Cytoreductive Surgery for Stage III Epithelial Ovarian Cancer. Ann Surg Oncol. 2015 Dec;22:S1611. doi: 10.1245/s10434-015-4542-z. PMID: 25821001.
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Showing 1 to 12 of 599 entries