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The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments.

Scientific data

Gorgolewski KJ, Auer T, Calhoun VD, Craddock RC, Das S, Duff EP, Flandin G, Ghosh SS, Glatard T, Halchenko YO, Handwerker DA, Hanke M, Keator D, Li X, Michael Z, Maumet C, Nichols BN, Nichols TE, Pellman J, Poline JB, Rokem A, Schaefer G, Sochat V, Triplett W, Turner JA, Varoquaux G, Poldrack RA.
PMID: 27326542
Sci Data. 2016 Jun 21;3:160044. doi: 10.1038/sdata.2016.44.

The development of magnetic resonance imaging (MRI) techniques has defined modern neuroimaging. Since its inception, tens of thousands of studies using techniques such as functional MRI and diffusion weighted imaging have allowed for the non-invasive study of the brain....

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Gorgolewski KJ, Auer T, Calhoun VD, et al. The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments. Sci Data. 2016;3:160044doi: 10.1038/sdata.2016.44.
Gorgolewski, K. J., Auer, T., Calhoun, V. D., Craddock, R. C., Das, S., Duff, E. P., Flandin, G., Ghosh, S. S., Glatard, T., Halchenko, Y. O., Handwerker, D. A., Hanke, M., Keator, D., Li, X., Michael, Z., Maumet, C., Nichols, B. N., Nichols, T. E., Pellman, J., Poline, J. B., Rokem, A., Schaefer, G., Sochat, V., Triplett, W., Turner, J. A., Varoquaux, G., & Poldrack, R. A. (2016). The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments. Scientific data, 3160044. https://doi.org/10.1038/sdata.2016.44
Gorgolewski, Krzysztof J, et al. "The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments." Scientific data vol. 3 (2016): 160044. doi: https://doi.org/10.1038/sdata.2016.44
Gorgolewski KJ, Auer T, Calhoun VD, Craddock RC, Das S, Duff EP, Flandin G, Ghosh SS, Glatard T, Halchenko YO, Handwerker DA, Hanke M, Keator D, Li X, Michael Z, Maumet C, Nichols BN, Nichols TE, Pellman J, Poline JB, Rokem A, Schaefer G, Sochat V, Triplett W, Turner JA, Varoquaux G, Poldrack RA. The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments. Sci Data. 2016 Jun 21;3:160044. doi: 10.1038/sdata.2016.44. PMID: 27326542; PMCID: PMC4978148.
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Cyberinfrastructure for Open Science at the Montreal Neurological Institute.

Frontiers in neuroinformatics

Das S, Glatard T, Rogers C, Saigle J, Paiva S, MacIntyre L, Safi-Harab M, Rousseau ME, Stirling J, Khalili-Mahani N, MacFarlane D, Kostopoulos P, Rioux P, Madjar C, Lecours-Boucher X, Vanamala S, Adalat R, Mohaddes Z, Fonov VS, Milot S, Leppert I, Degroot C, Durcan TM, Campbell T, Moreau J, Dagher A, Collins DL, Karamchandani J, Bar-Or A, Fon EA, Hoge R, Baillet S, Rouleau G, Evans AC.
PMID: 28111547
Front Neuroinform. 2017 Jan 06;10:53. doi: 10.3389/fninf.2016.00053. eCollection 2016.

Data sharing is becoming more of a requirement as technologies mature and as global research and communications diversify. As a result, researchers are looking for practical solutions, not only to enhance scientific collaborations, but also to acquire larger amounts...

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Das S, Glatard T, Rogers C, et al. Cyberinfrastructure for Open Science at the Montreal Neurological Institute. Front Neuroinform. 2017;10:53doi: 10.3389/fninf.2016.00053.
Das, S., Glatard, T., Rogers, C., Saigle, J., Paiva, S., MacIntyre, L., Safi-Harab, M., Rousseau, M. E., Stirling, J., Khalili-Mahani, N., MacFarlane, D., Kostopoulos, P., Rioux, P., Madjar, C., Lecours-Boucher, X., Vanamala, S., Adalat, R., Mohaddes, Z., Fonov, V. S., Milot, S., Leppert, I., Degroot, C., Durcan, T. M., Campbell, T., Moreau, J., Dagher, A., Collins, D. L., Karamchandani, J., Bar-Or, A., Fon, E. A., Hoge, R., Baillet, S., Rouleau, G., & Evans, A. C. (2016). Cyberinfrastructure for Open Science at the Montreal Neurological Institute. Frontiers in neuroinformatics, 1053. https://doi.org/10.3389/fninf.2016.00053
Das, Samir, et al. "Cyberinfrastructure for Open Science at the Montreal Neurological Institute." Frontiers in neuroinformatics vol. 10 (2016): 53. doi: https://doi.org/10.3389/fninf.2016.00053
Das S, Glatard T, Rogers C, Saigle J, Paiva S, MacIntyre L, Safi-Harab M, Rousseau ME, Stirling J, Khalili-Mahani N, MacFarlane D, Kostopoulos P, Rioux P, Madjar C, Lecours-Boucher X, Vanamala S, Adalat R, Mohaddes Z, Fonov VS, Milot S, Leppert I, Degroot C, Durcan TM, Campbell T, Moreau J, Dagher A, Collins DL, Karamchandani J, Bar-Or A, Fon EA, Hoge R, Baillet S, Rouleau G, Evans AC. Cyberinfrastructure for Open Science at the Montreal Neurological Institute. Front Neuroinform. 2017 Jan 06;10:53. doi: 10.3389/fninf.2016.00053. eCollection 2016. PMID: 28111547; PMCID: PMC5216036.
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Formation of (PNP)Rh complexes containing covalent rhodium-zinc bonds in studies of potential Rh-catalysed Negishi coupling.

Chemical communications (Cambridge, England)

Pell CJ, Shih WC, Gatard S, Ozerov OV.
PMID: 28560363
Chem Commun (Camb). 2017 Jun 13;53(48):6456-6459. doi: 10.1039/c7cc02707a.

While investigating rhodium-catalyzed Negishi coupling, it was observed that the (PNP)Rh fragment readily inserted into zinc-carbon bonds to form isolable molecules with covalent rhodium-zinc bonds.

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Pell CJ, Shih WC, Gatard S, et al. Formation of (PNP)Rh complexes containing covalent rhodium-zinc bonds in studies of potential Rh-catalysed Negishi coupling. Chem Commun (Camb). 2017;53(48):6456-6459doi: 10.1039/c7cc02707a.
Pell, C. J., Shih, W. C., Gatard, S., & Ozerov, O. V. (2017). Formation of (PNP)Rh complexes containing covalent rhodium-zinc bonds in studies of potential Rh-catalysed Negishi coupling. Chemical communications (Cambridge, England), 53(48), 6456-6459. https://doi.org/10.1039/c7cc02707a
Pell, Christopher J, et al. "Formation of (PNP)Rh complexes containing covalent rhodium-zinc bonds in studies of potential Rh-catalysed Negishi coupling." Chemical communications (Cambridge, England) vol. 53,48 (2017): 6456-6459. doi: https://doi.org/10.1039/c7cc02707a
Pell CJ, Shih WC, Gatard S, Ozerov OV. Formation of (PNP)Rh complexes containing covalent rhodium-zinc bonds in studies of potential Rh-catalysed Negishi coupling. Chem Commun (Camb). 2017 Jun 13;53(48):6456-6459. doi: 10.1039/c7cc02707a. PMID: 28560363.
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Acoustic scattering from complex elastic shells: visualization of S0, A0 and A waves.

Ultrasonics

Derbesse L, Pernod P, Latard V, Merlen A, Decultot D, Touraine N, Maze G.
PMID: 10829790
Ultrasonics. 2000 Mar;38(1):860-3. doi: 10.1016/s0041-624x(99)00165-1.

Acoustic scattering phenomena from complex immersed elastic shells are studied by high-speed Schlieren visualization for spark-generated spherical quasi-Dirac excitations. The situations considered are air-filled cylindrical shells under normal insonification and air-filled cylindrical shells soldered at one end with a...

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Derbesse L, Pernod P, Latard V, et al. Acoustic scattering from complex elastic shells: visualization of S0, A0 and A waves. Ultrasonics. 2000;38(1):860-3doi: 10.1016/s0041-624x(99)00165-1.
Derbesse, L., Pernod, P., Latard, V., Merlen, A., Decultot, D., Touraine, N., & Maze, G. (2000). Acoustic scattering from complex elastic shells: visualization of S0, A0 and A waves. Ultrasonics, 38(1), 860-3. https://doi.org/10.1016/s0041-624x(99)00165-1
Derbesse, et al. "Acoustic scattering from complex elastic shells: visualization of S0, A0 and A waves." Ultrasonics vol. 38,1 (2000): 860-3. doi: https://doi.org/10.1016/s0041-624x(99)00165-1
Derbesse L, Pernod P, Latard V, Merlen A, Decultot D, Touraine N, Maze G. Acoustic scattering from complex elastic shells: visualization of S0, A0 and A waves. Ultrasonics. 2000 Mar;38(1):860-3. doi: 10.1016/s0041-624x(99)00165-1. PMID: 10829790.
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A virtual laboratory for medical image analysis.

IEEE transactions on information technology in biomedicine : a publication of the IEEE Engineering in Medicine and Biology Society

Olabarriaga SD, Glatard T, de Boer PT.
PMID: 20371412
IEEE Trans Inf Technol Biomed. 2010 Jul;14(4):979-85. doi: 10.1109/TITB.2010.2046742. Epub 2010 Apr 05.

This paper presents the design, implementation, and usage of a virtual laboratory for medical image analysis. It is fully based on the Dutch grid, which is part of the Enabling Grids for E-sciencE (EGEE) production infrastructure and driven by...

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Olabarriaga SD, Glatard T, de Boer PT. A virtual laboratory for medical image analysis. IEEE Trans Inf Technol Biomed. 2010;14(4):979-85doi: 10.1109/TITB.2010.2046742.
Olabarriaga, S. D., Glatard, T., & de Boer, P. T. (2010). A virtual laboratory for medical image analysis. IEEE transactions on information technology in biomedicine : a publication of the IEEE Engineering in Medicine and Biology Society, 14(4), 979-85. https://doi.org/10.1109/TITB.2010.2046742
Olabarriaga, Sílvia D, et al. "A virtual laboratory for medical image analysis." IEEE transactions on information technology in biomedicine : a publication of the IEEE Engineering in Medicine and Biology Society vol. 14,4 (2010): 979-85. doi: https://doi.org/10.1109/TITB.2010.2046742
Olabarriaga SD, Glatard T, de Boer PT. A virtual laboratory for medical image analysis. IEEE Trans Inf Technol Biomed. 2010 Jul;14(4):979-85. doi: 10.1109/TITB.2010.2046742. Epub 2010 Apr 05. PMID: 20371412.
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Electroactive benzothiazole hydrazones and their [Mo6O19]2- derivatives: promising building blocks for conducting molecular materials.

Chemistry (Weinheim an der Bergstrasse, Germany)

Gatard S, Blanchard S, Schollhorn B, Gouzerh P, Proust A, Boubekeur K.
PMID: 20572176
Chemistry. 2010 Jul 26;16(28):8390-9. doi: 10.1002/chem.201000427.

The electroactive benzothiazole hydrazone AMBTH-H(2), a new member of the 2,2'-azino-bis(N-alkylbenzothiazole) family, was synthesised in a five-step procedure and characterised by using X-ray diffraction along with two intermediates and the N-methylbenzothiazole hydrazone MBTH-H(2). Both AMBTH-H(2) and MBTH-H(2) were coupled...

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Gatard S, Blanchard S, Schollhorn B, et al. Electroactive benzothiazole hydrazones and their [Mo6O19]2- derivatives: promising building blocks for conducting molecular materials. Chemistry. 2010;16(28):8390-9doi: 10.1002/chem.201000427.
Gatard, S., Blanchard, S., Schollhorn, B., Gouzerh, P., Proust, A., & Boubekeur, K. (2010). Electroactive benzothiazole hydrazones and their [Mo6O19]2- derivatives: promising building blocks for conducting molecular materials. Chemistry (Weinheim an der Bergstrasse, Germany), 16(28), 8390-9. https://doi.org/10.1002/chem.201000427
Gatard, Sylvain, et al. "Electroactive benzothiazole hydrazones and their [Mo6O19]2- derivatives: promising building blocks for conducting molecular materials." Chemistry (Weinheim an der Bergstrasse, Germany) vol. 16,28 (2010): 8390-9. doi: https://doi.org/10.1002/chem.201000427
Gatard S, Blanchard S, Schollhorn B, Gouzerh P, Proust A, Boubekeur K. Electroactive benzothiazole hydrazones and their [Mo6O19]2- derivatives: promising building blocks for conducting molecular materials. Chemistry. 2010 Jul 26;16(28):8390-9. doi: 10.1002/chem.201000427. PMID: 20572176.
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Olefin metathesis in nano-sized systems.

Beilstein journal of organic chemistry

Astruc D, Diallo AK, Gatard S, Liang L, Ornelas C, Martinez V, Méry D, Ruiz J.
PMID: 21286399
Beilstein J Org Chem. 2011 Jan 19;7:94-103. doi: 10.3762/bjoc.7.13.

The interplay between olefin metathesis and dendrimers and other nano systems is addressed in this mini review mostly based on the authors' own contributions over the last decade. Two subjects are presented and discussed: (i) The catalysis of olefin...

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Astruc D, Diallo AK, Gatard S, et al. Olefin metathesis in nano-sized systems. Beilstein J Org Chem. 2011;7:94-103doi: 10.3762/bjoc.7.13.
Astruc, D., Diallo, A. K., Gatard, S., Liang, L., Ornelas, C., Martinez, V., Méry, D., & Ruiz, J. (2011). Olefin metathesis in nano-sized systems. Beilstein journal of organic chemistry, 794-103. https://doi.org/10.3762/bjoc.7.13
Astruc, Didier, et al. "Olefin metathesis in nano-sized systems." Beilstein journal of organic chemistry vol. 7 (2011): 94-103. doi: https://doi.org/10.3762/bjoc.7.13
Astruc D, Diallo AK, Gatard S, Liang L, Ornelas C, Martinez V, Méry D, Ruiz J. Olefin metathesis in nano-sized systems. Beilstein J Org Chem. 2011 Jan 19;7:94-103. doi: 10.3762/bjoc.7.13. PMID: 21286399; PMCID: PMC3028528.
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Association Between Plasma Caffeine and Other Methylxanthines and Metabolic Parameters in a Psychiatric Population Treated With Psychotropic Drugs Inducing Metabolic Disturbances.

Frontiers in psychiatry

Delacrétaz A, Vandenberghe F, Glatard A, Levier A, Dubath C, Ansermot N, Crettol S, Gholam-Rezaee M, Guessous I, Bochud M, von Gunten A, Conus P, Eap CB, Ayish N.
PMID: 30473668
Front Psychiatry. 2018 Nov 09;9:573. doi: 10.3389/fpsyt.2018.00573. eCollection 2018.

No abstract available.

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Delacrétaz A, Vandenberghe F, Glatard A, et al. Association Between Plasma Caffeine and Other Methylxanthines and Metabolic Parameters in a Psychiatric Population Treated With Psychotropic Drugs Inducing Metabolic Disturbances. Front Psychiatry. 2018;9:573doi: 10.3389/fpsyt.2018.00573.
Delacrétaz, A., Vandenberghe, F., Glatard, A., Levier, A., Dubath, C., Ansermot, N., Crettol, S., Gholam-Rezaee, M., Guessous, I., Bochud, M., von Gunten, A., Conus, P., Eap, C. B., & Ayish, N. (2018). Association Between Plasma Caffeine and Other Methylxanthines and Metabolic Parameters in a Psychiatric Population Treated With Psychotropic Drugs Inducing Metabolic Disturbances. Frontiers in psychiatry, 9573. https://doi.org/10.3389/fpsyt.2018.00573
Delacrétaz, Aurélie, et al. "Association Between Plasma Caffeine and Other Methylxanthines and Metabolic Parameters in a Psychiatric Population Treated With Psychotropic Drugs Inducing Metabolic Disturbances." Frontiers in psychiatry vol. 9 (2018): 573. doi: https://doi.org/10.3389/fpsyt.2018.00573
Delacrétaz A, Vandenberghe F, Glatard A, Levier A, Dubath C, Ansermot N, Crettol S, Gholam-Rezaee M, Guessous I, Bochud M, von Gunten A, Conus P, Eap CB, Ayish N. Association Between Plasma Caffeine and Other Methylxanthines and Metabolic Parameters in a Psychiatric Population Treated With Psychotropic Drugs Inducing Metabolic Disturbances. Front Psychiatry. 2018 Nov 09;9:573. doi: 10.3389/fpsyt.2018.00573. eCollection 2018. PMID: 30473668; PMCID: PMC6238296.
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Diastereoselective Synthesis of Axially Chiral Xylose-Derived 1,3-Disubstituted Alkoxyallenes: Scope, Structure, and Mechanism.

The Journal of organic chemistry

Fortunato M, Gimbert Y, Rousset E, Lameiras P, Martinez A, Gatard S, Plantier-Royon R, Jaroschik F.
PMID: 32701279
J Org Chem. 2020 Aug 21;85(16):10681-10694. doi: 10.1021/acs.joc.0c01240. Epub 2020 Aug 05.

The deprotonation of differently substituted propargyl xylosides with

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Fortunato M, Gimbert Y, Rousset E, et al. Diastereoselective Synthesis of Axially Chiral Xylose-Derived 1,3-Disubstituted Alkoxyallenes: Scope, Structure, and Mechanism. J Org Chem. 2020;85(16):10681-10694doi: 10.1021/acs.joc.0c01240.
Fortunato, M., Gimbert, Y., Rousset, E., Lameiras, P., Martinez, A., Gatard, S., Plantier-Royon, R., & Jaroschik, F. (2020). Diastereoselective Synthesis of Axially Chiral Xylose-Derived 1,3-Disubstituted Alkoxyallenes: Scope, Structure, and Mechanism. The Journal of organic chemistry, 85(16), 10681-10694. https://doi.org/10.1021/acs.joc.0c01240
Fortunato, Moustapha, et al. "Diastereoselective Synthesis of Axially Chiral Xylose-Derived 1,3-Disubstituted Alkoxyallenes: Scope, Structure, and Mechanism." The Journal of organic chemistry vol. 85,16 (2020): 10681-10694. doi: https://doi.org/10.1021/acs.joc.0c01240
Fortunato M, Gimbert Y, Rousset E, Lameiras P, Martinez A, Gatard S, Plantier-Royon R, Jaroschik F. Diastereoselective Synthesis of Axially Chiral Xylose-Derived 1,3-Disubstituted Alkoxyallenes: Scope, Structure, and Mechanism. J Org Chem. 2020 Aug 21;85(16):10681-10694. doi: 10.1021/acs.joc.0c01240. Epub 2020 Aug 05. PMID: 32701279.
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Numerical uncertainty in analytical pipelines lead to impactful variability in brain networks.

PloS one

Kiar G, Chatelain Y, de Oliveira Castro P, Petit E, Rokem A, Varoquaux G, Misic B, Evans AC, Glatard T.
PMID: 34724000
PLoS One. 2021 Nov 01;16(11):e0250755. doi: 10.1371/journal.pone.0250755. eCollection 2021.

The analysis of brain-imaging data requires complex processing pipelines to support findings on brain function or pathologies. Recent work has shown that variability in analytical decisions, small amounts of noise, or computational environments can lead to substantial differences in...

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Kiar G, Chatelain Y, de Oliveira Castro P, et al. Numerical uncertainty in analytical pipelines lead to impactful variability in brain networks. PLoS One. 2021;16(11):e0250755doi: 10.1371/journal.pone.0250755.
Kiar, G., Chatelain, Y., de Oliveira Castro, P., Petit, E., Rokem, A., Varoquaux, G., Misic, B., Evans, A. C., & Glatard, T. (2021). Numerical uncertainty in analytical pipelines lead to impactful variability in brain networks. PloS one, 16(11), e0250755. https://doi.org/10.1371/journal.pone.0250755
Kiar, Gregory, et al. "Numerical uncertainty in analytical pipelines lead to impactful variability in brain networks." PloS one vol. 16,11 (2021): e0250755. doi: https://doi.org/10.1371/journal.pone.0250755
Kiar G, Chatelain Y, de Oliveira Castro P, Petit E, Rokem A, Varoquaux G, Misic B, Evans AC, Glatard T. Numerical uncertainty in analytical pipelines lead to impactful variability in brain networks. PLoS One. 2021 Nov 01;16(11):e0250755. doi: 10.1371/journal.pone.0250755. eCollection 2021. PMID: 34724000; PMCID: PMC8559953.
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Coagulation disorders during treatment with cefazolin and rifampicin: rare but dangerous.

Journal of bone and joint infection

Kouki I, Montagner C, Mauhin W, London J, Lazard T, Grimbert S, Zeller V, Lidove O.
PMID: 34084701
J Bone Jt Infect. 2021 Apr 01;6(5):131-134. doi: 10.5194/jbji-6-131-2021. eCollection 2021.

We describe a 79-year-old man with spondylodiscitis and unknown pathogen, treated with cefazolin and rifampicin. He developed a massive digestive hemorrhage. Prothrombin time was prolonged with severe vitamin-K-dependent clotting-factor deficiency. Severe bleeding can occur during cefazolin and rifampicin use....

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Kouki I, Montagner C, Mauhin W, et al. Coagulation disorders during treatment with cefazolin and rifampicin: rare but dangerous. J Bone Jt Infect. 2021;6(5):131-134doi: 10.5194/jbji-6-131-2021.
Kouki, I., Montagner, C., Mauhin, W., London, J., Lazard, T., Grimbert, S., Zeller, V., & Lidove, O. (2021). Coagulation disorders during treatment with cefazolin and rifampicin: rare but dangerous. Journal of bone and joint infection, 6(5), 131-134. https://doi.org/10.5194/jbji-6-131-2021
Kouki, Ines, et al. "Coagulation disorders during treatment with cefazolin and rifampicin: rare but dangerous." Journal of bone and joint infection vol. 6,5 (2021): 131-134. doi: https://doi.org/10.5194/jbji-6-131-2021
Kouki I, Montagner C, Mauhin W, London J, Lazard T, Grimbert S, Zeller V, Lidove O. Coagulation disorders during treatment with cefazolin and rifampicin: rare but dangerous. J Bone Jt Infect. 2021 Apr 01;6(5):131-134. doi: 10.5194/jbji-6-131-2021. eCollection 2021. PMID: 34084701; PMCID: PMC8131959.
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Antimicrobial peptides: mechanism of action and lipid-mediated synergistic interactions within membranes.

Faraday discussions

Juhl DW, Glattard E, Aisenbrey C, Bechinger B.
PMID: 34533138
Faraday Discuss. 2021 Sep 17; doi: 10.1039/d0fd00041h. Epub 2021 Sep 17.

Biophysical and structural studies of peptide-lipid interactions, peptide topology and dynamics have changed our view of how antimicrobial peptides insert and interact with membranes. Clearly, both peptides and lipids are highly dynamic, and change and mutually adapt their conformation,...

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Juhl DW, Glattard E, Aisenbrey C, et al. Antimicrobial peptides: mechanism of action and lipid-mediated synergistic interactions within membranes. Faraday Discuss. 2021;doi: 10.1039/d0fd00041h.
Juhl, D. W., Glattard, E., Aisenbrey, C., & Bechinger, B. (2021). Antimicrobial peptides: mechanism of action and lipid-mediated synergistic interactions within membranes. Faraday discussions, . https://doi.org/10.1039/d0fd00041h
Juhl, Dennis W, et al. "Antimicrobial peptides: mechanism of action and lipid-mediated synergistic interactions within membranes." Faraday discussions vol. (2021). doi: https://doi.org/10.1039/d0fd00041h
Juhl DW, Glattard E, Aisenbrey C, Bechinger B. Antimicrobial peptides: mechanism of action and lipid-mediated synergistic interactions within membranes. Faraday Discuss. 2021 Sep 17; doi: 10.1039/d0fd00041h. Epub 2021 Sep 17. PMID: 34533138.
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