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Chaophilic or chaotolerant fungi: a new category of extremophiles?.

Frontiers in microbiology

Zajc J, Džeroski S, Kocev D, Oren A, Sonjak S, Tkavc R, Gunde-Cimerman N.
PMID: 25566222
Front Microbiol. 2014 Dec 23;5:708. doi: 10.3389/fmicb.2014.00708. eCollection 2014.

It is well known that few halophilic bacteria and archaea as well as certain fungi can grow at the highest concentrations of NaCl. However, data about possible life at extremely high concentrations of various others kosmotropic (stabilizing; like NaCl,...

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Zajc J, Džeroski S, Kocev D, et al. Chaophilic or chaotolerant fungi: a new category of extremophiles?. Front Microbiol. 2014;5:708doi: 10.3389/fmicb.2014.00708.
Zajc, J., Džeroski, S., Kocev, D., Oren, A., Sonjak, S., Tkavc, R., & Gunde-Cimerman, N. (2014). Chaophilic or chaotolerant fungi: a new category of extremophiles?. Frontiers in microbiology, 5708. https://doi.org/10.3389/fmicb.2014.00708
Zajc, Janja, et al. "Chaophilic or chaotolerant fungi: a new category of extremophiles?." Frontiers in microbiology vol. 5 (2014): 708. doi: https://doi.org/10.3389/fmicb.2014.00708
Zajc J, Džeroski S, Kocev D, Oren A, Sonjak S, Tkavc R, Gunde-Cimerman N. Chaophilic or chaotolerant fungi: a new category of extremophiles?. Front Microbiol. 2014 Dec 23;5:708. doi: 10.3389/fmicb.2014.00708. eCollection 2014. PMID: 25566222; PMCID: PMC4274975.
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Phylogeny of xerophilic aspergilli (subgenus .

Studies in mycology

Sklenář F, Jurjević Ž, Zalar P, Frisvad JC, Visagie CM, Kolařík M, Houbraken J, Chen AJ, Yilmaz N, Seifert KA, Coton M, Déniel F, Gunde-Cimerman N, Samson RA, Peterson SW, Hubka V.
PMID: 29158611
Stud Mycol. 2017 Sep;88:161-236. doi: 10.1016/j.simyco.2017.09.002. Epub 2017 Sep 27.

No abstract available.

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Sklenář F, Jurjević Ž, Zalar P, et al. Phylogeny of xerophilic aspergilli (subgenus . Stud Mycol. 2017;88:161-236doi: 10.1016/j.simyco.2017.09.002.
Sklenář, F., Jurjević, �. �., Zalar, P., Frisvad, J. C., Visagie, C. M., Kolařík, M., Houbraken, J., Chen, A. J., Yilmaz, N., Seifert, K. A., Coton, M., Déniel, F., Gunde-Cimerman, N., Samson, R. A., Peterson, S. W., & Hubka, V. (2017). Phylogeny of xerophilic aspergilli (subgenus . Studies in mycology, 88161-236. https://doi.org/10.1016/j.simyco.2017.09.002
Sklenář, F, et al. "Phylogeny of xerophilic aspergilli (subgenus ." Studies in mycology vol. 88 (2017): 161-236. doi: https://doi.org/10.1016/j.simyco.2017.09.002
Sklenář F, Jurjević Ž, Zalar P, Frisvad JC, Visagie CM, Kolařík M, Houbraken J, Chen AJ, Yilmaz N, Seifert KA, Coton M, Déniel F, Gunde-Cimerman N, Samson RA, Peterson SW, Hubka V. Phylogeny of xerophilic aspergilli (subgenus . Stud Mycol. 2017 Sep;88:161-236. doi: 10.1016/j.simyco.2017.09.002. Epub 2017 Sep 27. PMID: 29158611; PMCID: PMC5678892.
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Darkening of the Greenland Ice Sheet: Fungal Abundance and Diversity Are Associated With Algal Bloom.

Frontiers in microbiology

Perini L, Gostinčar C, Anesio AM, Williamson C, Tranter M, Gunde-Cimerman N.
PMID: 30949152
Front Microbiol. 2019 Mar 21;10:557. doi: 10.3389/fmicb.2019.00557. eCollection 2019.

Recent studies have highlighted the importance of ice-algal blooms in driving darkening and therefore surface melt of the Greenland Ice Sheet (GrIS). However, the contribution of fungal and bacterial communities to this microbially driven albedo reduction remains unconstrained. To...

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Perini L, Gostinčar C, Anesio AM, et al. Darkening of the Greenland Ice Sheet: Fungal Abundance and Diversity Are Associated With Algal Bloom. Front Microbiol. 2019;10:557doi: 10.3389/fmicb.2019.00557.
Perini, L., Gostinčar, C., Anesio, A. M., Williamson, C., Tranter, M., & Gunde-Cimerman, N. (2019). Darkening of the Greenland Ice Sheet: Fungal Abundance and Diversity Are Associated With Algal Bloom. Frontiers in microbiology, 10557. https://doi.org/10.3389/fmicb.2019.00557
Perini, Laura, et al. "Darkening of the Greenland Ice Sheet: Fungal Abundance and Diversity Are Associated With Algal Bloom." Frontiers in microbiology vol. 10 (2019): 557. doi: https://doi.org/10.3389/fmicb.2019.00557
Perini L, Gostinčar C, Anesio AM, Williamson C, Tranter M, Gunde-Cimerman N. Darkening of the Greenland Ice Sheet: Fungal Abundance and Diversity Are Associated With Algal Bloom. Front Microbiol. 2019 Mar 21;10:557. doi: 10.3389/fmicb.2019.00557. eCollection 2019. PMID: 30949152; PMCID: PMC6437116.
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Global Molecular Diversity of the Halotolerant Fungus .

Life (Basel, Switzerland)

Marchetta A, Gerrits van den Ende B, Al-Hatmi AMS, Hagen F, Zalar P, Sudhadham M, Gunde-Cimerman N, Urzì C, de Hoog S, De Leo F.
PMID: 30041476
Life (Basel). 2018 Jul 23;8(3). doi: 10.3390/life8030031.

A global set of clinical and environmental strains of the halotolerant black yeast-like fungus

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Marchetta A, Gerrits van den Ende B, Al-Hatmi AMS, et al. Global Molecular Diversity of the Halotolerant Fungus . Life (Basel). 2018;8(3)doi: 10.3390/life8030031.
Marchetta, A., Gerrits van den Ende, B., Al-Hatmi, A. M. S., Hagen, F., Zalar, P., Sudhadham, M., Gunde-Cimerman, N., Urzì, C., de Hoog, S., & De Leo, F. (2018). Global Molecular Diversity of the Halotolerant Fungus . Life (Basel, Switzerland), 8(3), . https://doi.org/10.3390/life8030031
Marchetta, Alessia, et al. "Global Molecular Diversity of the Halotolerant Fungus ." Life (Basel, Switzerland) vol. 8,3 (2018). doi: https://doi.org/10.3390/life8030031
Marchetta A, Gerrits van den Ende B, Al-Hatmi AMS, Hagen F, Zalar P, Sudhadham M, Gunde-Cimerman N, Urzì C, de Hoog S, De Leo F. Global Molecular Diversity of the Halotolerant Fungus . Life (Basel). 2018 Jul 23;8(3). doi: 10.3390/life8030031. PMID: 30041476; PMCID: PMC6161025.
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Phylogeny and ecology of the ubiquitous saprobe Cladosporium sphaerospermum, with descriptions of seven new species from hypersaline environments.

Studies in mycology

Zalar P, de Hoog GS, Schroers HJ, Crous PW, Groenewald JZ, Gunde-Cimerman N.
PMID: 18490999
Stud Mycol. 2007;58:157-83. doi: 10.3114/sim.2007.58.06.

Saprobic Cladosporium isolates morphologically similar to C. sphaerospermum are phylogenetically analysed on the basis of DNA sequences of the ribosomal RNA gene cluster, including the internal transcribed spacer regions ITS1 and ITS2, the 5.8S rDNA (ITS) and the small...

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Zalar P, de Hoog GS, Schroers HJ, et al. Phylogeny and ecology of the ubiquitous saprobe Cladosporium sphaerospermum, with descriptions of seven new species from hypersaline environments. Stud Mycol. 2007;58:157-83doi: 10.3114/sim.2007.58.06.
Zalar, P., de Hoog, G. S., Schroers, H. J., Crous, P. W., Groenewald, J. Z., & Gunde-Cimerman, N. (2007). Phylogeny and ecology of the ubiquitous saprobe Cladosporium sphaerospermum, with descriptions of seven new species from hypersaline environments. Studies in mycology, 58157-83. https://doi.org/10.3114/sim.2007.58.06
Zalar, P, et al. "Phylogeny and ecology of the ubiquitous saprobe Cladosporium sphaerospermum, with descriptions of seven new species from hypersaline environments." Studies in mycology vol. 58 (2007): 157-83. doi: https://doi.org/10.3114/sim.2007.58.06
Zalar P, de Hoog GS, Schroers HJ, Crous PW, Groenewald JZ, Gunde-Cimerman N. Phylogeny and ecology of the ubiquitous saprobe Cladosporium sphaerospermum, with descriptions of seven new species from hypersaline environments. Stud Mycol. 2007;58:157-83. doi: 10.3114/sim.2007.58.06. PMID: 18490999; PMCID: PMC2104741.
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Seven Years at High Salinity-Experimental Evolution of the Extremely Halotolerant Black Yeast .

Journal of fungi (Basel, Switzerland)

Gostinčar C, Stajich JE, Kejžar A, Sinha S, Nislow C, Lenassi M, Gunde-Cimerman N.
PMID: 34575761
J Fungi (Basel). 2021 Sep 04;7(9). doi: 10.3390/jof7090723.

The experimental evolution of microorganisms exposed to extreme conditions can provide insight into cellular adaptation to stress. Typically, stress-sensitive species are exposed to stress over many generations and then examined for improvements in their stress tolerance. In contrast, when...

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Gostinčar C, Stajich JE, Kejžar A, et al. Seven Years at High Salinity-Experimental Evolution of the Extremely Halotolerant Black Yeast . J Fungi (Basel). 2021;7(9)doi: 10.3390/jof7090723.
Gostinčar, C., Stajich, J. E., Kejžar, A., Sinha, S., Nislow, C., Lenassi, M., & Gunde-Cimerman, N. (2021). Seven Years at High Salinity-Experimental Evolution of the Extremely Halotolerant Black Yeast . Journal of fungi (Basel, Switzerland), 7(9), . https://doi.org/10.3390/jof7090723
Gostinčar, Cene, et al. "Seven Years at High Salinity-Experimental Evolution of the Extremely Halotolerant Black Yeast ." Journal of fungi (Basel, Switzerland) vol. 7,9 (2021). doi: https://doi.org/10.3390/jof7090723
Gostinčar C, Stajich JE, Kejžar A, Sinha S, Nislow C, Lenassi M, Gunde-Cimerman N. Seven Years at High Salinity-Experimental Evolution of the Extremely Halotolerant Black Yeast . J Fungi (Basel). 2021 Sep 04;7(9). doi: 10.3390/jof7090723. PMID: 34575761; PMCID: PMC8468603.
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Virulence Traits and Population Genomics of the Black Yeast .

Journal of fungi (Basel, Switzerland)

Černoša A, Sun X, Gostinčar C, Fang C, Gunde-Cimerman N, Song Z.
PMID: 34436204
J Fungi (Basel). 2021 Aug 16;7(8). doi: 10.3390/jof7080665.

The black yeast-like fungus

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Černoša A, Sun X, Gostinčar C, et al. Virulence Traits and Population Genomics of the Black Yeast . J Fungi (Basel). 2021;7(8)doi: 10.3390/jof7080665.
Černoša, A., Sun, X., Gostinčar, C., Fang, C., Gunde-Cimerman, N., & Song, Z. (2021). Virulence Traits and Population Genomics of the Black Yeast . Journal of fungi (Basel, Switzerland), 7(8), . https://doi.org/10.3390/jof7080665
Černoša, Anja, et al. "Virulence Traits and Population Genomics of the Black Yeast ." Journal of fungi (Basel, Switzerland) vol. 7,8 (2021). doi: https://doi.org/10.3390/jof7080665
Černoša A, Sun X, Gostinčar C, Fang C, Gunde-Cimerman N, Song Z. Virulence Traits and Population Genomics of the Black Yeast . J Fungi (Basel). 2021 Aug 16;7(8). doi: 10.3390/jof7080665. PMID: 34436204; PMCID: PMC8401163.
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Growing a circular economy with fungal biotechnology: a white paper.

Fungal biology and biotechnology

Meyer V, Basenko EY, Benz JP, Braus GH, Caddick MX, Csukai M, de Vries RP, Endy D, Frisvad JC, Gunde-Cimerman N, Haarmann T, Hadar Y, Hansen K, Johnson RI, Keller NP, Kraševec N, Mortensen UH, Perez R, Ram AFJ, Record E, Ross P, Shapaval V, Steiniger C, van den Brink H, van Munster J, Yarden O, Wösten HAB.
PMID: 32280481
Fungal Biol Biotechnol. 2020 Apr 02;7:5. doi: 10.1186/s40694-020-00095-z. eCollection 2020.

Fungi have the ability to transform organic materials into a rich and diverse set of useful products and provide distinct opportunities for tackling the urgent challenges before all humans. Fungal biotechnology can advance the transition from our petroleum-based economy...

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Meyer V, Basenko EY, Benz JP, et al. Growing a circular economy with fungal biotechnology: a white paper. Fungal Biol Biotechnol. 2020;7:5doi: 10.1186/s40694-020-00095-z.
Meyer, V., Basenko, E. Y., Benz, J. P., Braus, G. H., Caddick, M. X., Csukai, M., de Vries, R. P., Endy, D., Frisvad, J. C., Gunde-Cimerman, N., Haarmann, T., Hadar, Y., Hansen, K., Johnson, R. I., Keller, N. P., Kraševec, N., Mortensen, U. H., Perez, R., Ram, A. F. J., Record, E., Ross, P., Shapaval, V., Steiniger, C., van den Brink, H., van Munster, J., Yarden, O., & Wösten, H. A. B. (2020). Growing a circular economy with fungal biotechnology: a white paper. Fungal biology and biotechnology, 75. https://doi.org/10.1186/s40694-020-00095-z
Meyer, Vera, et al. "Growing a circular economy with fungal biotechnology: a white paper." Fungal biology and biotechnology vol. 7 (2020): 5. doi: https://doi.org/10.1186/s40694-020-00095-z
Meyer V, Basenko EY, Benz JP, Braus GH, Caddick MX, Csukai M, de Vries RP, Endy D, Frisvad JC, Gunde-Cimerman N, Haarmann T, Hadar Y, Hansen K, Johnson RI, Keller NP, Kraševec N, Mortensen UH, Perez R, Ram AFJ, Record E, Ross P, Shapaval V, Steiniger C, van den Brink H, van Munster J, Yarden O, Wösten HAB. Growing a circular economy with fungal biotechnology: a white paper. Fungal Biol Biotechnol. 2020 Apr 02;7:5. doi: 10.1186/s40694-020-00095-z. eCollection 2020. PMID: 32280481; PMCID: PMC7140391.
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Shed Light in the DaRk LineagES of the Fungal Tree of Life-STRES.

Life (Basel, Switzerland)

Selbmann L, Benkő Z, Coleine C, de Hoog S, Donati C, Druzhinina I, Emri T, Ettinger CL, Gladfelter AS, Gorbushina AA, Grigoriev IV, Grube M, Gunde-Cimerman N, Karányi ZÁ, Kocsis B, Kubressoian T, Miklós I, Miskei M, Muggia L, Northen T, Novak-Babič M, Pennacchio C, Pfliegler WP, Pòcsi I, Prigione V, Riquelme M, Segata N, Schumacher J, Shelest E, Sterflinger K, Tesei D, U'Ren JM, Varese GC, Vázquez-Campos X, Vicente VA, Souza EM, Zalar P, Walker AK, Stajich JE.
PMID: 33352712
Life (Basel). 2020 Dec 19;10(12). doi: 10.3390/life10120362.

The polyphyletic group of black fungi within the Ascomycota (Arthoniomycetes, Dothideomycetes, and Eurotiomycetes) is ubiquitous in natural and anthropogenic habitats. Partly because of their dark, melanin-based pigmentation, black fungi are resistant to stresses including UV- and ionizing-radiation, heat and...

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Selbmann L, Benkő Z, Coleine C, et al. Shed Light in the DaRk LineagES of the Fungal Tree of Life-STRES. Life (Basel). 2020;10(12)doi: 10.3390/life10120362.
Selbmann, L., Benkő, Z., Coleine, C., de Hoog, S., Donati, C., Druzhinina, I., Emri, T., Ettinger, C. L., Gladfelter, A. S., Gorbushina, A. A., Grigoriev, I. V., Grube, M., Gunde-Cimerman, N., Karányi, Z. �. �., Kocsis, B., Kubressoian, T., Miklós, I., Miskei, M., Muggia, L., Northen, T., Novak-Babič, M., Pennacchio, C., Pfliegler, W. P., Pòcsi, I., Prigione, V., Riquelme, M., Segata, N., Schumacher, J., Shelest, E., Sterflinger, K., Tesei, D., U'Ren, J. M., Varese, G. C., Vázquez-Campos, X., Vicente, V. A., Souza, E. M., Zalar, P., Walker, A. K., & Stajich, J. E. (2020). Shed Light in the DaRk LineagES of the Fungal Tree of Life-STRES. Life (Basel, Switzerland), 10(12), . https://doi.org/10.3390/life10120362
Selbmann, Laura, et al. "Shed Light in the DaRk LineagES of the Fungal Tree of Life-STRES." Life (Basel, Switzerland) vol. 10,12 (2020). doi: https://doi.org/10.3390/life10120362
Selbmann L, Benkő Z, Coleine C, de Hoog S, Donati C, Druzhinina I, Emri T, Ettinger CL, Gladfelter AS, Gorbushina AA, Grigoriev IV, Grube M, Gunde-Cimerman N, Karányi ZÁ, Kocsis B, Kubressoian T, Miklós I, Miskei M, Muggia L, Northen T, Novak-Babič M, Pennacchio C, Pfliegler WP, Pòcsi I, Prigione V, Riquelme M, Segata N, Schumacher J, Shelest E, Sterflinger K, Tesei D, U'Ren JM, Varese GC, Vázquez-Campos X, Vicente VA, Souza EM, Zalar P, Walker AK, Stajich JE. Shed Light in the DaRk LineagES of the Fungal Tree of Life-STRES. Life (Basel). 2020 Dec 19;10(12). doi: 10.3390/life10120362. PMID: 33352712; PMCID: PMC7767062.
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Novel Antarctic yeast adapts to cold by switching energy metabolism and increasing small RNA synthesis.

The ISME journal

Touchette D, Altshuler I, Gostinčar C, Zalar P, Raymond-Bouchard I, Zajc J, McKay CP, Gunde-Cimerman N, Whyte LG.
PMID: 34294882
ISME J. 2022 Jan;16(1):221-232. doi: 10.1038/s41396-021-01030-9. Epub 2021 Jul 22.

The novel extremophilic yeast Rhodotorula frigidialcoholis, formerly R. JG1b, was isolated from ice-cemented permafrost in University Valley (Antarctic), one of coldest and driest environments on Earth. Phenotypic and phylogenetic analyses classified R. frigidialcoholis as a novel species. To characterize...

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Touchette D, Altshuler I, Gostinčar C, et al. Novel Antarctic yeast adapts to cold by switching energy metabolism and increasing small RNA synthesis. ISME J. 2021;16(1):221-232doi: 10.1038/s41396-021-01030-9.
Touchette, D., Altshuler, I., Gostinčar, C., Zalar, P., Raymond-Bouchard, I., Zajc, J., McKay, C. P., Gunde-Cimerman, N., & Whyte, L. G. (2022). Novel Antarctic yeast adapts to cold by switching energy metabolism and increasing small RNA synthesis. The ISME journal, 16(1), 221-232. https://doi.org/10.1038/s41396-021-01030-9
Touchette, D, et al. "Novel Antarctic yeast adapts to cold by switching energy metabolism and increasing small RNA synthesis." The ISME journal vol. 16,1 (2022): 221-232. doi: https://doi.org/10.1038/s41396-021-01030-9
Touchette D, Altshuler I, Gostinčar C, Zalar P, Raymond-Bouchard I, Zajc J, McKay CP, Gunde-Cimerman N, Whyte LG. Novel Antarctic yeast adapts to cold by switching energy metabolism and increasing small RNA synthesis. ISME J. 2022 Jan;16(1):221-232. doi: 10.1038/s41396-021-01030-9. Epub 2021 Jul 22. PMID: 34294882; PMCID: PMC8692454.
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Hypersaline waters in salterns - natural ecological niches for halophilic black yeasts.

FEMS microbiology ecology

Gunde-Cimermana N, Zalarb P, de Hoogc S, Plemenitasd A.
PMID: 10858582
FEMS Microbiol Ecol. 2000 Jun 01;32(3):235-240. doi: 10.1111/j.1574-6941.2000.tb00716.x.

Hypersaline waters in salterns have so far been considered to be populated only with halophilic algae and bacteria and completely lacking halophilic fungi. In this paper we present population dynamics of polymorphic black yeasts, isolated from hypersaline waters (3-30%...

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Gunde-Cimermana N, Zalarb P, de Hoogc S, et al. Hypersaline waters in salterns - natural ecological niches for halophilic black yeasts. FEMS Microbiol Ecol. 2000;32(3):235-240doi: 10.1111/j.1574-6941.2000.tb00716.x.
Gunde-Cimermana, N., Zalarb, P., de Hoogc S, & Plemenitasd, A. (2000). Hypersaline waters in salterns - natural ecological niches for halophilic black yeasts. FEMS microbiology ecology, 32(3), 235-240. https://doi.org/10.1111/j.1574-6941.2000.tb00716.x
Gunde-Cimermana, et al. "Hypersaline waters in salterns - natural ecological niches for halophilic black yeasts." FEMS microbiology ecology vol. 32,3 (2000): 235-240. doi: https://doi.org/10.1111/j.1574-6941.2000.tb00716.x
Gunde-Cimermana N, Zalarb P, de Hoogc S, Plemenitasd A. Hypersaline waters in salterns - natural ecological niches for halophilic black yeasts. FEMS Microbiol Ecol. 2000 Jun 01;32(3):235-240. doi: 10.1111/j.1574-6941.2000.tb00716.x. PMID: 10858582.
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The extremely halotolerant black yeast .

IMA fungus

Zalar P, Zupančič J, Gostinčar C, Zajc J, de Hoog GS, De Leo F, Azua-Bustos A, Gunde-Cimerman N.
PMID: 32647617
IMA Fungus. 2019 Jul 08;10:10. doi: 10.1186/s43008-019-0007-5. eCollection 2019.

The polymorphic black yeast

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Zalar P, Zupančič J, Gostinčar C, et al. The extremely halotolerant black yeast . IMA Fungus. 2019;10:10doi: 10.1186/s43008-019-0007-5.
Zalar, P., Zupančič, J., Gostinčar, C., Zajc, J., de Hoog, G. S., De Leo, F., Azua-Bustos, A., & Gunde-Cimerman, N. (2019). The extremely halotolerant black yeast . IMA fungus, 1010. https://doi.org/10.1186/s43008-019-0007-5
Zalar, Polona, et al. "The extremely halotolerant black yeast ." IMA fungus vol. 10 (2019): 10. doi: https://doi.org/10.1186/s43008-019-0007-5
Zalar P, Zupančič J, Gostinčar C, Zajc J, de Hoog GS, De Leo F, Azua-Bustos A, Gunde-Cimerman N. The extremely halotolerant black yeast . IMA Fungus. 2019 Jul 08;10:10. doi: 10.1186/s43008-019-0007-5. eCollection 2019. PMID: 32647617; PMCID: PMC7325687.
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