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High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409(T) with an incomplete denitrification pathway.

Standards in genomic sciences

Zhou EM, Murugapiran SK, Mefferd CC, Liu L, Xian WD, Yin YR, Ming H, Yu TT, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TB, Ngan CY, Daum C, Shapiro N, Markowitz V, Ivanova N, Spunde A, Kyrpides N, Woyke T, Li WJ, Hedlund BP.
PMID: 26925197
Stand Genomic Sci. 2016 Feb 27;11:20. doi: 10.1186/s40793-016-0140-3. eCollection 2016.

Thermus amyloliquefaciens type strain YIM 77409(T) is a thermophilic, Gram-negative, non-motile and rod-shaped bacterium isolated from Niujie Hot Spring in Eryuan County, Yunnan Province, southwest China. In the present study we describe the features of strain YIM 77409(T) together...

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Zhou EM, Murugapiran SK, Mefferd CC, et al. High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409(T) with an incomplete denitrification pathway. Stand Genomic Sci. 2016;11:20doi: 10.1186/s40793-016-0140-3.
Zhou, E. M., Murugapiran, S. K., Mefferd, C. C., Liu, L., Xian, W. D., Yin, Y. R., Ming, H., Yu, T. T., Huntemann, M., Clum, A., Pillay, M., Palaniappan, K., Varghese, N., Mikhailova, N., Stamatis, D., Reddy, T. B., Ngan, C. Y., Daum, C., Shapiro, N., Markowitz, V., Ivanova, N., Spunde, A., Kyrpides, N., Woyke, T., Li, W. J., & Hedlund, B. P. (2016). High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409(T) with an incomplete denitrification pathway. Standards in genomic sciences, 1120. https://doi.org/10.1186/s40793-016-0140-3
Zhou, En-Min, et al. "High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409(T) with an incomplete denitrification pathway." Standards in genomic sciences vol. 11 (2016): 20. doi: https://doi.org/10.1186/s40793-016-0140-3
Zhou EM, Murugapiran SK, Mefferd CC, Liu L, Xian WD, Yin YR, Ming H, Yu TT, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TB, Ngan CY, Daum C, Shapiro N, Markowitz V, Ivanova N, Spunde A, Kyrpides N, Woyke T, Li WJ, Hedlund BP. High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409(T) with an incomplete denitrification pathway. Stand Genomic Sci. 2016 Feb 27;11:20. doi: 10.1186/s40793-016-0140-3. eCollection 2016. PMID: 26925197; PMCID: PMC4769583.
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Permanent draft genome of .

Standards in genomic sciences

Boden R, Hutt LP, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy T, Ngan CY, Daum C, Shapiro N, Markowitz V, Ivanova N, Woyke T, Kyrpides N.
PMID: 27708749
Stand Genomic Sci. 2016 Sep 26;11:74. doi: 10.1186/s40793-016-0188-0. eCollection 2016.

No abstract available.

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Boden R, Hutt LP, Huntemann M, et al. Permanent draft genome of . Stand Genomic Sci. 2016;11:74doi: 10.1186/s40793-016-0188-0.
Boden, R., Hutt, L. P., Huntemann, M., Clum, A., Pillay, M., Palaniappan, K., Varghese, N., Mikhailova, N., Stamatis, D., Reddy, T., Ngan, C. Y., Daum, C., Shapiro, N., Markowitz, V., Ivanova, N., Woyke, T., & Kyrpides, N. (2016). Permanent draft genome of . Standards in genomic sciences, 1174. https://doi.org/10.1186/s40793-016-0188-0
Boden, Rich, et al. "Permanent draft genome of ." Standards in genomic sciences vol. 11 (2016): 74. doi: https://doi.org/10.1186/s40793-016-0188-0
Boden R, Hutt LP, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy T, Ngan CY, Daum C, Shapiro N, Markowitz V, Ivanova N, Woyke T, Kyrpides N. Permanent draft genome of . Stand Genomic Sci. 2016 Sep 26;11:74. doi: 10.1186/s40793-016-0188-0. eCollection 2016. PMID: 27708749; PMCID: PMC5037610.
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Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos.

Standards in genomic sciences

Tiwari R, Howieson J, Yates R, Tian R, Held B, Tapia R, Han C, Seshadri R, Reddy TB, Huntemann M, Pati A, Woyke T, Markowitz V, Ivanova N, Kyrpides N, Reeve W.
PMID: 26629308
Stand Genomic Sci. 2015 Nov 30;10:113. doi: 10.1186/s40793-015-0115-9. eCollection 2015.

Bradyrhizobium sp. WSM1253 is a novel N2-fixing bacterium isolated from a root nodule of the herbaceous annual legume Ornithopus compressus that was growing on the Greek Island of Sifnos. WSM1253 emerged as a strain of interest in an Australian...

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Tiwari R, Howieson J, Yates R, et al. Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos. Stand Genomic Sci. 2015;10:113doi: 10.1186/s40793-015-0115-9.
Tiwari, R., Howieson, J., Yates, R., Tian, R., Held, B., Tapia, R., Han, C., Seshadri, R., Reddy, T. B., Huntemann, M., Pati, A., Woyke, T., Markowitz, V., Ivanova, N., Kyrpides, N., & Reeve, W. (2015). Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos. Standards in genomic sciences, 10113. https://doi.org/10.1186/s40793-015-0115-9
Tiwari, Ravi, et al. "Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos." Standards in genomic sciences vol. 10 (2015): 113. doi: https://doi.org/10.1186/s40793-015-0115-9
Tiwari R, Howieson J, Yates R, Tian R, Held B, Tapia R, Han C, Seshadri R, Reddy TB, Huntemann M, Pati A, Woyke T, Markowitz V, Ivanova N, Kyrpides N, Reeve W. Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos. Stand Genomic Sci. 2015 Nov 30;10:113. doi: 10.1186/s40793-015-0115-9. eCollection 2015. PMID: 26629308; PMCID: PMC4665870.
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The F-actin modifier villin regulates insulin granule dynamics and exocytosis downstream of islet cell autoantigen 512.

Molecular metabolism

Mziaut H, Mulligan B, Hoboth P, Otto O, Ivanova A, Herbig M, Schumann D, Hildebrandt T, Dehghany J, Sönmez A, Münster C, Meyer-Hermann M, Guck J, Kalaidzidis Y, Solimena M.
PMID: 27656403
Mol Metab. 2016 Jun 10;5(8):656-668. doi: 10.1016/j.molmet.2016.05.015. eCollection 2016 Aug.

OBJECTIVE: Insulin release from pancreatic islet β cells should be tightly controlled to avoid hypoglycemia and insulin resistance. The cortical actin cytoskeleton is a gate for regulated exocytosis of insulin secretory granules (SGs) by restricting their mobility and access...

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Mziaut H, Mulligan B, Hoboth P, et al. The F-actin modifier villin regulates insulin granule dynamics and exocytosis downstream of islet cell autoantigen 512. Mol Metab. 2016;5(8):656-668doi: 10.1016/j.molmet.2016.05.015.
Mziaut, H., Mulligan, B., Hoboth, P., Otto, O., Ivanova, A., Herbig, M., Schumann, D., Hildebrandt, T., Dehghany, J., Sönmez, A., Münster, C., Meyer-Hermann, M., Guck, J., Kalaidzidis, Y., & Solimena, M. (2016). The F-actin modifier villin regulates insulin granule dynamics and exocytosis downstream of islet cell autoantigen 512. Molecular metabolism, 5(8), 656-668. https://doi.org/10.1016/j.molmet.2016.05.015
Mziaut, Hassan, et al. "The F-actin modifier villin regulates insulin granule dynamics and exocytosis downstream of islet cell autoantigen 512." Molecular metabolism vol. 5,8 (2016): 656-668. doi: https://doi.org/10.1016/j.molmet.2016.05.015
Mziaut H, Mulligan B, Hoboth P, Otto O, Ivanova A, Herbig M, Schumann D, Hildebrandt T, Dehghany J, Sönmez A, Münster C, Meyer-Hermann M, Guck J, Kalaidzidis Y, Solimena M. The F-actin modifier villin regulates insulin granule dynamics and exocytosis downstream of islet cell autoantigen 512. Mol Metab. 2016 Jun 10;5(8):656-668. doi: 10.1016/j.molmet.2016.05.015. eCollection 2016 Aug. PMID: 27656403; PMCID: PMC5021679.
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Erratum to: Waves of c-Fos and Arc Proteins Expression in Neuronal Populations of the Hippocampus in Response to a Single Episode of New Experience.

Bulletin of experimental biology and medicine

Ivashkina OI, Toropova KA, Ivanova AA, Chekhov SA, Anokhin KV.
PMID: 27259492
Bull Exp Biol Med. 2016 May;161(1):209. doi: 10.1007/s10517-016-3376-4.

No abstract available.

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Ivashkina OI, Toropova KA, Ivanova AA, et al. Erratum to: Waves of c-Fos and Arc Proteins Expression in Neuronal Populations of the Hippocampus in Response to a Single Episode of New Experience. Bull Exp Biol Med. 2016;161(1):209doi: 10.1007/s10517-016-3376-4.
Ivashkina, O. I., Toropova, K. A., Ivanova, A. A., Chekhov, S. A., & Anokhin, K. V. (2016). Erratum to: Waves of c-Fos and Arc Proteins Expression in Neuronal Populations of the Hippocampus in Response to a Single Episode of New Experience. Bulletin of experimental biology and medicine, 161(1), 209. https://doi.org/10.1007/s10517-016-3376-4
Ivashkina, O I, et al. "Erratum to: Waves of c-Fos and Arc Proteins Expression in Neuronal Populations of the Hippocampus in Response to a Single Episode of New Experience." Bulletin of experimental biology and medicine vol. 161,1 (2016): 209. doi: https://doi.org/10.1007/s10517-016-3376-4
Ivashkina OI, Toropova KA, Ivanova AA, Chekhov SA, Anokhin KV. Erratum to: Waves of c-Fos and Arc Proteins Expression in Neuronal Populations of the Hippocampus in Response to a Single Episode of New Experience. Bull Exp Biol Med. 2016 May;161(1):209. doi: 10.1007/s10517-016-3376-4. PMID: 27259492.
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Complete Genome Sequences of Caldicellulosiruptor sp. Strain Rt8.B8, Caldicellulosiruptor sp. Strain Wai35.B1, and "Thermoanaerobacter cellulolyticus".

Genome announcements

Lee LL, Izquierdo JA, Blumer-Schuette SE, Zurawski JV, Conway JM, Cottingham RW, Huntemann M, Copeland A, Chen IM, Kyrpides N, Markowitz V, Palaniappan K, Ivanova N, Mikhailova N, Ovchinnikova G, Andersen E, Pati A, Stamatis D, Reddy TB, Shapiro N, Nordberg HP, Cantor MN, Hua SX, Woyke T, Kelly RM.
PMID: 25977428
Genome Announc. 2015 May 14;3(3). doi: 10.1128/genomeA.00440-15.

The genus Caldicellulosiruptor contains extremely thermophilic, cellulolytic bacteria capable of lignocellulose deconstruction. Currently, complete genome sequences for eleven Caldicellulosiruptor species are available. Here, we report genome sequences for three additional Caldicellulosiruptor species: Rt8.B8 DSM 8990 (New Zealand), Wai35.B1 DSM...

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Lee LL, Izquierdo JA, Blumer-Schuette SE, et al. Complete Genome Sequences of Caldicellulosiruptor sp. Strain Rt8.B8, Caldicellulosiruptor sp. Strain Wai35.B1, and "Thermoanaerobacter cellulolyticus". Genome Announc. 2015;3(3)doi: 10.1128/genomeA.00440-15.
Lee, L. L., Izquierdo, J. A., Blumer-Schuette, S. E., Zurawski, J. V., Conway, J. M., Cottingham, R. W., Huntemann, M., Copeland, A., Chen, I. M., Kyrpides, N., Markowitz, V., Palaniappan, K., Ivanova, N., Mikhailova, N., Ovchinnikova, G., Andersen, E., Pati, A., Stamatis, D., Reddy, T. B., Shapiro, N., Nordberg, H. P., Cantor, M. N., Hua, S. X., Woyke, T., & Kelly, R. M. (2015). Complete Genome Sequences of Caldicellulosiruptor sp. Strain Rt8.B8, Caldicellulosiruptor sp. Strain Wai35.B1, and "Thermoanaerobacter cellulolyticus". Genome announcements, 3(3), . https://doi.org/10.1128/genomeA.00440-15
Lee, Laura L, et al. "Complete Genome Sequences of Caldicellulosiruptor sp. Strain Rt8.B8, Caldicellulosiruptor sp. Strain Wai35.B1, and "Thermoanaerobacter cellulolyticus"." Genome announcements vol. 3,3 (2015). doi: https://doi.org/10.1128/genomeA.00440-15
Lee LL, Izquierdo JA, Blumer-Schuette SE, Zurawski JV, Conway JM, Cottingham RW, Huntemann M, Copeland A, Chen IM, Kyrpides N, Markowitz V, Palaniappan K, Ivanova N, Mikhailova N, Ovchinnikova G, Andersen E, Pati A, Stamatis D, Reddy TB, Shapiro N, Nordberg HP, Cantor MN, Hua SX, Woyke T, Kelly RM. Complete Genome Sequences of Caldicellulosiruptor sp. Strain Rt8.B8, Caldicellulosiruptor sp. Strain Wai35.B1, and "Thermoanaerobacter cellulolyticus". Genome Announc. 2015 May 14;3(3). doi: 10.1128/genomeA.00440-15. PMID: 25977428; PMCID: PMC4432334.
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Gravity resonance spectroscopy constrains dark energy and dark matter scenarios.

Physical review letters

Jenke T, Cronenberg G, Burgdörfer J, Chizhova LA, Geltenbort P, Ivanov AN, Lauer T, Lins T, Rotter S, Saul H, Schmidt U, Abele H.
PMID: 24785025
Phys Rev Lett. 2014 Apr 18;112(15):151105. doi: 10.1103/PhysRevLett.112.151105. Epub 2014 Apr 16.

We report on precision resonance spectroscopy measurements of quantum states of ultracold neutrons confined above the surface of a horizontal mirror by the gravity potential of Earth. Resonant transitions between several of the lowest quantum states are observed for...

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Jenke T, Cronenberg G, Burgdörfer J, et al. Gravity resonance spectroscopy constrains dark energy and dark matter scenarios. Phys Rev Lett. 2014;112(15):151105doi: 10.1103/PhysRevLett.112.151105.
Jenke, T., Cronenberg, G., Burgdörfer, J., Chizhova, L. A., Geltenbort, P., Ivanov, A. N., Lauer, T., Lins, T., Rotter, S., Saul, H., Schmidt, U., & Abele, H. (2014). Gravity resonance spectroscopy constrains dark energy and dark matter scenarios. Physical review letters, 112(15), 151105. https://doi.org/10.1103/PhysRevLett.112.151105
Jenke, T, et al. "Gravity resonance spectroscopy constrains dark energy and dark matter scenarios." Physical review letters vol. 112,15 (2014): 151105. doi: https://doi.org/10.1103/PhysRevLett.112.151105
Jenke T, Cronenberg G, Burgdörfer J, Chizhova LA, Geltenbort P, Ivanov AN, Lauer T, Lins T, Rotter S, Saul H, Schmidt U, Abele H. Gravity resonance spectroscopy constrains dark energy and dark matter scenarios. Phys Rev Lett. 2014 Apr 18;112(15):151105. doi: 10.1103/PhysRevLett.112.151105. Epub 2014 Apr 16. PMID: 24785025.
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[No title available]

International journal of systematic and evolutionary microbiology

Kulichevskaya IS, Ivanova AA, Suzina NE, Rijpstra WIC, Sinninghe Damsté JS, Dedysh SN.
PMID: 26611145
Int J Syst Evol Microbiol. 2016 Feb;66(2):837-844. doi: 10.1099/ijsem.0.000799. Epub 2015 Nov 26.

Two isolates of aerobic, budding, pink-pigmented bacteria, designated strains PX4

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Kulichevskaya IS, Ivanova AA, Suzina NE, et al. . Int J Syst Evol Microbiol. 2015;66(2):837-844doi: 10.1099/ijsem.0.000799.
Kulichevskaya, I. S., Ivanova, A. A., Suzina, N. E., Rijpstra, W. I. C., Sinninghe Damsté, J. S., & Dedysh, S. N. (2016). . International journal of systematic and evolutionary microbiology, 66(2), 837-844. https://doi.org/10.1099/ijsem.0.000799
Kulichevskaya, Irina S, et al. "." International journal of systematic and evolutionary microbiology vol. 66,2 (2016): 837-844. doi: https://doi.org/10.1099/ijsem.0.000799
Kulichevskaya IS, Ivanova AA, Suzina NE, Rijpstra WIC, Sinninghe Damsté JS, Dedysh SN. . Int J Syst Evol Microbiol. 2016 Feb;66(2):837-844. doi: 10.1099/ijsem.0.000799. Epub 2015 Nov 26. PMID: 26611145.
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Synthesis and magnetic properties of the chromium-doped iron sulfide Fe1-xCrxS single crystalline nanoplates with a NiAs crystal structure.

Physical chemistry chemical physics : PCCP

Starchikov SS, Lyubutin IS, Lin CR, Tseng YT, Funtov KO, Ogarkova YL, Dmitrieva TV, Ivanova AG.
PMID: 26018943
Phys Chem Chem Phys. 2015 Jun 28;17(24):15829-36. doi: 10.1039/c5cp01846c. Epub 2015 May 28.

Single crystalline iron sulfide nanoparticles doped with chromium Fe1-xCrxS (0 ≤x≤ 0.15) have been successfully prepared by a thermal decomposition method. The particles are self-organized into the single crystalline plates with the accurate hexagonal shape and dimensions up to...

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Starchikov SS, Lyubutin IS, Lin CR, et al. Synthesis and magnetic properties of the chromium-doped iron sulfide Fe1-xCrxS single crystalline nanoplates with a NiAs crystal structure. Phys Chem Chem Phys. 2015;17(24):15829-36doi: 10.1039/c5cp01846c.
Starchikov, S. S., Lyubutin, I. S., Lin, C. R., Tseng, Y. T., Funtov, K. O., Ogarkova, Y. L., Dmitrieva, T. V., & Ivanova, A. G. (2015). Synthesis and magnetic properties of the chromium-doped iron sulfide Fe1-xCrxS single crystalline nanoplates with a NiAs crystal structure. Physical chemistry chemical physics : PCCP, 17(24), 15829-36. https://doi.org/10.1039/c5cp01846c
Starchikov, S S, et al. "Synthesis and magnetic properties of the chromium-doped iron sulfide Fe1-xCrxS single crystalline nanoplates with a NiAs crystal structure." Physical chemistry chemical physics : PCCP vol. 17,24 (2015): 15829-36. doi: https://doi.org/10.1039/c5cp01846c
Starchikov SS, Lyubutin IS, Lin CR, Tseng YT, Funtov KO, Ogarkova YL, Dmitrieva TV, Ivanova AG. Synthesis and magnetic properties of the chromium-doped iron sulfide Fe1-xCrxS single crystalline nanoplates with a NiAs crystal structure. Phys Chem Chem Phys. 2015 Jun 28;17(24):15829-36. doi: 10.1039/c5cp01846c. Epub 2015 May 28. PMID: 26018943.
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Biodiversity inventories in high gear: DNA barcoding facilitates a rapid biotic survey of a temperate nature reserve.

Biodiversity data journal

Telfer AC, Young MR, Quinn J, Perez K, Sobel CN, Sones JE, Levesque-Beaudin V, Derbyshire R, Fernandez-Triana J, Rougerie R, Thevanayagam A, Boskovic A, Borisenko AV, Cadel A, Brown A, Pages A, Castillo AH, Nicolai A, Glenn Mockford BM, Bukowski B, Wilson B, Trojahn B, Lacroix CA, Brimblecombe C, Hay C, Ho C, Steinke C, Warne CP, Garrido Cortes C, Engelking D, Wright D, Lijtmaer DA, Gascoigne D, Hernandez Martich D, Morningstar D, Neumann D, Steinke D, Marco DeBruin DD, Dobias D, Sears E, Richard E, Damstra E, Zakharov EV, Laberge F, Collins GE, Blagoev GA, Grainge G, Ansell G, Meredith G, Hogg I, McKeown J, Topan J, Bracey J, Guenther J, Sills-Gilligan J, Addesi J, Persi J, Layton KK, D'Souza K, Dorji K, Grundy K, Nghidinwa K, Ronnenberg K, Lee KM, Xie L, Lu L, Penev L, Gonzalez M, Rosati ME, Kekkonen M, Kuzmina M, Iskandar M, Mutanen M, Fatahi M, Pentinsaari M, Bauman M, Nikolova N, Ivanova NV, Jones N, Weerasuriya N, Monkhouse N, Lavinia PD, Jannetta P, Hanisch PE, McMullin RT, Ojeda Flores R, Mouttet R, Vender R, Labbee RN, Forsyth R, Lauder R, Dickson R, Kroft R, Miller SE, MacDonald S, Panthi S, Pedersen S, Sobek-Swant S, Naik S, Lipinskaya T, Eagalle T, Decaëns T, Kosuth T, Braukmann T, Woodcock T, Roslin T, Zammit T, Campbell V, Dinca V, Peneva V, Hebert PD, deWaard JR.
PMID: 26379469
Biodivers Data J. 2015 Aug 30;(3):e6313. doi: 10.3897/BDJ.3.e6313. eCollection 2015.

BACKGROUND: Comprehensive biotic surveys, or 'all taxon biodiversity inventories' (ATBI), have traditionally been limited in scale or scope due to the complications surrounding specimen sorting and species identification. To circumvent these issues, several ATBI projects have successfully integrated DNA...

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Telfer AC, Young MR, Quinn J, et al. Biodiversity inventories in high gear: DNA barcoding facilitates a rapid biotic survey of a temperate nature reserve. Biodivers Data J. 2015;(3):e6313doi: 10.3897/BDJ.3.e6313.
Telfer, A. C., Young, M. R., Quinn, J., Perez, K., Sobel, C. N., Sones, J. E., Levesque-Beaudin, V., Derbyshire, R., Fernandez-Triana, J., Rougerie, R., Thevanayagam, A., Boskovic, A., Borisenko, A. V., Cadel, A., Brown, A., Pages, A., Castillo, A. H., Nicolai, A., Glenn Mockford, B. M., Bukowski, B., Wilson, B., Trojahn, B., Lacroix, C. A., Brimblecombe, C., Hay, C., Ho, C., Steinke, C., Warne, C. P., Garrido Cortes, C., Engelking, D., Wright, D., Lijtmaer, D. A., Gascoigne, D., Hernandez Martich, D., Morningstar, D., Neumann, D., Steinke, D., Marco DeBruin, D. D., Dobias, D., Sears, E., Richard, E., Damstra, E., Zakharov, E. V., Laberge, F., Collins, G. E., Blagoev, G. A., Grainge, G., Ansell, G., Meredith, G., Hogg, I., McKeown, J., Topan, J., Bracey, J., Guenther, J., Sills-Gilligan, J., Addesi, J., Persi, J., Layton, K. K., D'Souza, K., Dorji, K., Grundy, K., Nghidinwa, K., Ronnenberg, K., Lee, K. M., Xie, L., Lu, L., Penev, L., Gonzalez, M., Rosati, M. E., Kekkonen, M., Kuzmina, M., Iskandar, M., Mutanen, M., Fatahi, M., Pentinsaari, M., Bauman, M., Nikolova, N., Ivanova, N. V., Jones, N., Weerasuriya, N., Monkhouse, N., Lavinia, P. D., Jannetta, P., Hanisch, P. E., McMullin, R. T., Ojeda Flores, R., Mouttet, R., Vender, R., Labbee, R. N., Forsyth, R., Lauder, R., Dickson, R., Kroft, R., Miller, S. E., MacDonald, S., Panthi, S., Pedersen, S., Sobek-Swant, S., Naik, S., Lipinskaya, T., Eagalle, T., Decaëns, T., Kosuth, T., Braukmann, T., Woodcock, T., Roslin, T., Zammit, T., Campbell, V., Dinca, V., Peneva, V., Hebert, P. D., & deWaard, J. R. (2015). Biodiversity inventories in high gear: DNA barcoding facilitates a rapid biotic survey of a temperate nature reserve. Biodiversity data journal, (3), e6313. https://doi.org/10.3897/BDJ.3.e6313
Telfer, Angela C, et al. "Biodiversity inventories in high gear: DNA barcoding facilitates a rapid biotic survey of a temperate nature reserve." Biodiversity data journal vol. ,3 (2015): e6313. doi: https://doi.org/10.3897/BDJ.3.e6313
Telfer AC, Young MR, Quinn J, Perez K, Sobel CN, Sones JE, Levesque-Beaudin V, Derbyshire R, Fernandez-Triana J, Rougerie R, Thevanayagam A, Boskovic A, Borisenko AV, Cadel A, Brown A, Pages A, Castillo AH, Nicolai A, Glenn Mockford BM, Bukowski B, Wilson B, Trojahn B, Lacroix CA, Brimblecombe C, Hay C, Ho C, Steinke C, Warne CP, Garrido Cortes C, Engelking D, Wright D, Lijtmaer DA, Gascoigne D, Hernandez Martich D, Morningstar D, Neumann D, Steinke D, Marco DeBruin DD, Dobias D, Sears E, Richard E, Damstra E, Zakharov EV, Laberge F, Collins GE, Blagoev GA, Grainge G, Ansell G, Meredith G, Hogg I, McKeown J, Topan J, Bracey J, Guenther J, Sills-Gilligan J, Addesi J, Persi J, Layton KK, D'Souza K, Dorji K, Grundy K, Nghidinwa K, Ronnenberg K, Lee KM, Xie L, Lu L, Penev L, Gonzalez M, Rosati ME, Kekkonen M, Kuzmina M, Iskandar M, Mutanen M, Fatahi M, Pentinsaari M, Bauman M, Nikolova N, Ivanova NV, Jones N, Weerasuriya N, Monkhouse N, Lavinia PD, Jannetta P, Hanisch PE, McMullin RT, Ojeda Flores R, Mouttet R, Vender R, Labbee RN, Forsyth R, Lauder R, Dickson R, Kroft R, Miller SE, MacDonald S, Panthi S, Pedersen S, Sobek-Swant S, Naik S, Lipinskaya T, Eagalle T, Decaëns T, Kosuth T, Braukmann T, Woodcock T, Roslin T, Zammit T, Campbell V, Dinca V, Peneva V, Hebert PD, deWaard JR. Biodiversity inventories in high gear: DNA barcoding facilitates a rapid biotic survey of a temperate nature reserve. Biodivers Data J. 2015 Aug 30;(3):e6313. doi: 10.3897/BDJ.3.e6313. eCollection 2015. PMID: 26379469; PMCID: PMC4568406.
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High quality draft genome sequence of Bacteroides barnesiae type strain BL2(T) (DSM 18169(T)) from chicken caecum.

Standards in genomic sciences

Sakamoto M, Lapidus AL, Han J, Trong S, Haynes M, Reddy TB, Mikhailova N, Huntemann M, Pati A, Ivanova NN, Pukall R, Markowitz VM, Woyke T, Klenk HP, Kyrpides NC, Ohkuma M.
PMID: 26380636
Stand Genomic Sci. 2015 Aug 02;10:48. doi: 10.1186/s40793-015-0045-6. eCollection 2015.

Bacteroides barnesiae Lan et al. 2006 is a species of the genus Bacteroides, which belongs to the family Bacteroidaceae. Strain BL2(T) is of interest because it was isolated from the gut of a chicken and the growing awareness that...

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Sakamoto M, Lapidus AL, Han J, et al. High quality draft genome sequence of Bacteroides barnesiae type strain BL2(T) (DSM 18169(T)) from chicken caecum. Stand Genomic Sci. 2015;10:48doi: 10.1186/s40793-015-0045-6.
Sakamoto, M., Lapidus, A. L., Han, J., Trong, S., Haynes, M., Reddy, T. B., Mikhailova, N., Huntemann, M., Pati, A., Ivanova, N. N., Pukall, R., Markowitz, V. M., Woyke, T., Klenk, H. P., Kyrpides, N. C., & Ohkuma, M. (2015). High quality draft genome sequence of Bacteroides barnesiae type strain BL2(T) (DSM 18169(T)) from chicken caecum. Standards in genomic sciences, 1048. https://doi.org/10.1186/s40793-015-0045-6
Sakamoto, Mitsuo, et al. "High quality draft genome sequence of Bacteroides barnesiae type strain BL2(T) (DSM 18169(T)) from chicken caecum." Standards in genomic sciences vol. 10 (2015): 48. doi: https://doi.org/10.1186/s40793-015-0045-6
Sakamoto M, Lapidus AL, Han J, Trong S, Haynes M, Reddy TB, Mikhailova N, Huntemann M, Pati A, Ivanova NN, Pukall R, Markowitz VM, Woyke T, Klenk HP, Kyrpides NC, Ohkuma M. High quality draft genome sequence of Bacteroides barnesiae type strain BL2(T) (DSM 18169(T)) from chicken caecum. Stand Genomic Sci. 2015 Aug 02;10:48. doi: 10.1186/s40793-015-0045-6. eCollection 2015. PMID: 26380636; PMCID: PMC4572637.
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Arl13b regulates Shh signaling from both inside and outside the cilium.

Molecular biology of the cell

Mariani LE, Bijlsma MF, Ivanova AA, Suciu SK, Kahn RA, Caspary T.
PMID: 27682584
Mol Biol Cell. 2016 Sep 28; doi: 10.1091/mbc.E16-03-0189. Epub 2016 Sep 28.

The regulatory GTPase Arl13b localizes to primary cilia, where it regulates Sonic hedgehog (Shh) signaling. Missense mutations in ARL13B can cause the ciliopathy Joubert syndrome, while the mouse null allele is embryonic lethal. We used mouse embryonic fibroblasts as...

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Mariani LE, Bijlsma MF, Ivanova AA, et al. Arl13b regulates Shh signaling from both inside and outside the cilium. Mol Biol Cell. 2016;doi: 10.1091/mbc.E16-03-0189.
Mariani, L. E., Bijlsma, M. F., Ivanova, A. A., Suciu, S. K., Kahn, R. A., & Caspary, T. (2016). Arl13b regulates Shh signaling from both inside and outside the cilium. Molecular biology of the cell, . https://doi.org/10.1091/mbc.E16-03-0189
Mariani, Laura E, et al. "Arl13b regulates Shh signaling from both inside and outside the cilium." Molecular biology of the cell vol. (2016). doi: https://doi.org/10.1091/mbc.E16-03-0189
Mariani LE, Bijlsma MF, Ivanova AA, Suciu SK, Kahn RA, Caspary T. Arl13b regulates Shh signaling from both inside and outside the cilium. Mol Biol Cell. 2016 Sep 28; doi: 10.1091/mbc.E16-03-0189. Epub 2016 Sep 28. PMID: 27682584; PMCID: PMC5170560.
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