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Draft Genome Sequence of Beneficial Rice Rhizosphere Isolate Pseudomonas aeruginosa PUPa3.

Genome announcements

Uzelac G, Bertani I, Kojic M, Paszkiewicz KH, Studholme DJ, Passos da Silva D, Venturi V.
PMID: 24994800
Genome Announc. 2014 Jul 03;2(4). doi: 10.1128/genomeA.00654-14.

Pseudomonas aeruginosa PUPa3 is a rhizosphere-colonizing and plant growth-promoting strain isolated from the rhizosphere of rice. This strain has, however, been shown to be pathogenic in two nonmammalian infection models. Here we report the draft genome sequence of P....

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Uzelac G, Bertani I, Kojic M, et al. Draft Genome Sequence of Beneficial Rice Rhizosphere Isolate Pseudomonas aeruginosa PUPa3. Genome Announc. 2014;2(4)doi: 10.1128/genomeA.00654-14.
Uzelac, G., Bertani, I., Kojic, M., Paszkiewicz, K. H., Studholme, D. J., Passos da Silva, D., & Venturi, V. (2014). Draft Genome Sequence of Beneficial Rice Rhizosphere Isolate Pseudomonas aeruginosa PUPa3. Genome announcements, 2(4), . https://doi.org/10.1128/genomeA.00654-14
Uzelac, Gordana, et al. "Draft Genome Sequence of Beneficial Rice Rhizosphere Isolate Pseudomonas aeruginosa PUPa3." Genome announcements vol. 2,4 (2014). doi: https://doi.org/10.1128/genomeA.00654-14
Uzelac G, Bertani I, Kojic M, Paszkiewicz KH, Studholme DJ, Passos da Silva D, Venturi V. Draft Genome Sequence of Beneficial Rice Rhizosphere Isolate Pseudomonas aeruginosa PUPa3. Genome Announc. 2014 Jul 03;2(4). doi: 10.1128/genomeA.00654-14. PMID: 24994800; PMCID: PMC4082000.
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Curtain Flow Column: Optimization of Efficiency and Sensitivity.

Journal of visualized experiments : JoVE

Pravadali-Cekic S, Kocic D, Hua S, Jones A, Dennis G, Shalliker A.
PMID: 27341443
J Vis Exp. 2016 Jun 12;(112). doi: 10.3791/53471.

Active Flow Technology (AFT) is a form of column technology that increases the separation performance of a HPLC column through the use of a specially purpose built multiport end-fitting(s). Curtain Flow (CF) columns belong to the AFT suite of...

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Pravadali-Cekic S, Kocic D, Hua S, et al. Curtain Flow Column: Optimization of Efficiency and Sensitivity. J Vis Exp. 2016;(112)doi: 10.3791/53471.
Pravadali-Cekic, S., Kocic, D., Hua, S., Jones, A., Dennis, G., & Shalliker, A. (2016). Curtain Flow Column: Optimization of Efficiency and Sensitivity. Journal of visualized experiments : JoVE, (112), . https://doi.org/10.3791/53471
Pravadali-Cekic, Sercan, et al. "Curtain Flow Column: Optimization of Efficiency and Sensitivity." Journal of visualized experiments : JoVE vol. ,112 (2016). doi: https://doi.org/10.3791/53471
Pravadali-Cekic S, Kocic D, Hua S, Jones A, Dennis G, Shalliker A. Curtain Flow Column: Optimization of Efficiency and Sensitivity. J Vis Exp. 2016 Jun 12;(112). doi: 10.3791/53471. PMID: 27341443; PMCID: PMC4927787.
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First Report of Stolbur Phytoplasma Affecting Cichorium intybus in Serbia.

Plant disease

Pavlovic S, Starović M, Stojanovic SD, Kojic S, Marinkovic J, Josic D.
PMID: 30708689
Plant Dis. 2014 Jun;98(6):839. doi: 10.1094/PDIS-09-13-0947-PDN.

Chicory (Cichorium intybus, Asteraceae) is a typical Mediterranean plant indigenous to Europe, western Asia, Egypt, and North America (3). It is commonly consumed as a fresh vegetable in salads. In rural areas of Serbia it grows as a weed...

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Pavlovic S, Starović M, Stojanovic SD, et al. First Report of Stolbur Phytoplasma Affecting Cichorium intybus in Serbia. Plant Dis. 2014;98(6):839doi: 10.1094/PDIS-09-13-0947-PDN.
Pavlovic, S., Starović, M., Stojanovic, S. D., Kojic, S., Marinkovic, J., & Josic, D. (2014). First Report of Stolbur Phytoplasma Affecting Cichorium intybus in Serbia. Plant disease, 98(6), 839. https://doi.org/10.1094/PDIS-09-13-0947-PDN
Pavlovic, S, et al. "First Report of Stolbur Phytoplasma Affecting Cichorium intybus in Serbia." Plant disease vol. 98,6 (2014): 839. doi: https://doi.org/10.1094/PDIS-09-13-0947-PDN
Pavlovic S, Starović M, Stojanovic SD, Kojic S, Marinkovic J, Josic D. First Report of Stolbur Phytoplasma Affecting Cichorium intybus in Serbia. Plant Dis. 2014 Jun;98(6):839. doi: 10.1094/PDIS-09-13-0947-PDN. PMID: 30708689.
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First Report on Natural Infection of Paeonia tenuifolia by 'Candidatus Phytoplasma solani' in Serbia.

Plant disease

Adamovic D, Djalovic I, Mitrovic P, Kojic S, Pivic R, Josic D.
PMID: 30708708
Plant Dis. 2014 Apr;98(4):565. doi: 10.1094/PDIS-07-13-0702-PDN.

Peony (Paeonia tenuifolia L.) is a herbaceous perennial plant known for its beautiful and showy flowers. In Serbia it is native to the Deliblato Sands and is used as an ornamental and medicinal plant in folk medicine. This plant...

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Adamovic D, Djalovic I, Mitrovic P, et al. First Report on Natural Infection of Paeonia tenuifolia by 'Candidatus Phytoplasma solani' in Serbia. Plant Dis. 2014;98(4):565doi: 10.1094/PDIS-07-13-0702-PDN.
Adamovic, D., Djalovic, I., Mitrovic, P., Kojic, S., Pivic, R., & Josic, D. (2014). First Report on Natural Infection of Paeonia tenuifolia by 'Candidatus Phytoplasma solani' in Serbia. Plant disease, 98(4), 565. https://doi.org/10.1094/PDIS-07-13-0702-PDN
Adamovic, D, et al. "First Report on Natural Infection of Paeonia tenuifolia by 'Candidatus Phytoplasma solani' in Serbia." Plant disease vol. 98,4 (2014): 565. doi: https://doi.org/10.1094/PDIS-07-13-0702-PDN
Adamovic D, Djalovic I, Mitrovic P, Kojic S, Pivic R, Josic D. First Report on Natural Infection of Paeonia tenuifolia by 'Candidatus Phytoplasma solani' in Serbia. Plant Dis. 2014 Apr;98(4):565. doi: 10.1094/PDIS-07-13-0702-PDN. PMID: 30708708.
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Functional Characterization of the Lactolisterin BU Gene Cluster of .

Frontiers in microbiology

Miljkovic M, Lozo J, Mirkovic N, O'Connor PM, Malesevic M, Jovcic B, Cotter PD, Kojic M.
PMID: 30498487
Front Microbiol. 2018 Nov 15;9:2774. doi: 10.3389/fmicb.2018.02774. eCollection 2018.

The gene cluster responsible for the production of the aureocin A53-like bacteriocin, lactolisterin BU, is located on plasmid pBU6 in

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Miljkovic M, Lozo J, Mirkovic N, et al. Functional Characterization of the Lactolisterin BU Gene Cluster of . Front Microbiol. 2018;9:2774doi: 10.3389/fmicb.2018.02774.
Miljkovic, M., Lozo, J., Mirkovic, N., O'Connor, P. M., Malesevic, M., Jovcic, B., Cotter, P. D., & Kojic, M. (2018). Functional Characterization of the Lactolisterin BU Gene Cluster of . Frontiers in microbiology, 92774. https://doi.org/10.3389/fmicb.2018.02774
Miljkovic, Marija, et al. "Functional Characterization of the Lactolisterin BU Gene Cluster of ." Frontiers in microbiology vol. 9 (2018): 2774. doi: https://doi.org/10.3389/fmicb.2018.02774
Miljkovic M, Lozo J, Mirkovic N, O'Connor PM, Malesevic M, Jovcic B, Cotter PD, Kojic M. Functional Characterization of the Lactolisterin BU Gene Cluster of . Front Microbiol. 2018 Nov 15;9:2774. doi: 10.3389/fmicb.2018.02774. eCollection 2018. PMID: 30498487; PMCID: PMC6249370.
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Optimal Practice for Vancomycin Therapeutic Drug Monitoring: Position Statement From the Anti-infectives Committee of the International Association of Therapeutic Drug Monitoring and Clinical Toxicology.

Therapeutic drug monitoring

Reuter SE, Stocker SL, Alffenaar JC, Baldelli S, Cattaneo D, Jones G, Koch BCP, Kocic D, Mathew SK, Molinaro M, Neely M, Sandaradura I, Marriott DJE.
PMID: 34882107
Ther Drug Monit. 2022 Feb 01;44(1):121-132. doi: 10.1097/FTD.0000000000000944.

ABSTRACT: Individualization of vancomycin dosing based on therapeutic drug monitoring (TDM) data is known to improve patient outcomes compared with fixed or empirical dosing strategies. There is increasing evidence to support area-under-the-curve (AUC24)-guided TDM to inform vancomycin dosing decisions...

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Reuter SE, Stocker SL, Alffenaar JC, et al. Optimal Practice for Vancomycin Therapeutic Drug Monitoring: Position Statement From the Anti-infectives Committee of the International Association of Therapeutic Drug Monitoring and Clinical Toxicology. Ther Drug Monit. 2022;44(1):121-132doi: 10.1097/FTD.0000000000000944.
Reuter, S. E., Stocker, S. L., Alffenaar, J. C., Baldelli, S., Cattaneo, D., Jones, G., Koch, B. C. P., Kocic, D., Mathew, S. K., Molinaro, M., Neely, M., Sandaradura, I., & Marriott, D. J. E. (2022). Optimal Practice for Vancomycin Therapeutic Drug Monitoring: Position Statement From the Anti-infectives Committee of the International Association of Therapeutic Drug Monitoring and Clinical Toxicology. Therapeutic drug monitoring, 44(1), 121-132. https://doi.org/10.1097/FTD.0000000000000944
Reuter, Stephanie E, et al. "Optimal Practice for Vancomycin Therapeutic Drug Monitoring: Position Statement From the Anti-infectives Committee of the International Association of Therapeutic Drug Monitoring and Clinical Toxicology." Therapeutic drug monitoring vol. 44,1 (2022): 121-132. doi: https://doi.org/10.1097/FTD.0000000000000944
Reuter SE, Stocker SL, Alffenaar JC, Baldelli S, Cattaneo D, Jones G, Koch BCP, Kocic D, Mathew SK, Molinaro M, Neely M, Sandaradura I, Marriott DJE. Optimal Practice for Vancomycin Therapeutic Drug Monitoring: Position Statement From the Anti-infectives Committee of the International Association of Therapeutic Drug Monitoring and Clinical Toxicology. Ther Drug Monit. 2022 Feb 01;44(1):121-132. doi: 10.1097/FTD.0000000000000944. PMID: 34882107.
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SOX9 Defines Distinct Populations of Cells in SHH Medulloblastoma but Is Not Required for Math1-Driven Tumor Formation.

Molecular cancer research : MCR

Adolphe C, Millar A, Kojic M, Barkauskas DS, Sundström A, Swartling FJ, Hediyeh-Zadeh S, Tan CW, Davis MJ, Genovesi LA, Wainwright BJ.
PMID: 34330843
Mol Cancer Res. 2021 Nov;19(11):1831-1839. doi: 10.1158/1541-7786.MCR-21-0117. Epub 2021 Jul 30.

Medulloblastoma is the most common malignant pediatric brain tumor and there is an urgent need for molecularly targeted and subgroup-specific therapies. The stem cell factor SOX9, has been proposed as a potential therapeutic target for the treatment of Sonic...

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Adolphe C, Millar A, Kojic M, et al. SOX9 Defines Distinct Populations of Cells in SHH Medulloblastoma but Is Not Required for Math1-Driven Tumor Formation. Mol Cancer Res. 2021;19(11):1831-1839doi: 10.1158/1541-7786.MCR-21-0117.
Adolphe, C., Millar, A., Kojic, M., Barkauskas, D. S., Sundström, A., Swartling, F. J., Hediyeh-Zadeh, S., Tan, C. W., Davis, M. J., Genovesi, L. A., & Wainwright, B. J. (2021). SOX9 Defines Distinct Populations of Cells in SHH Medulloblastoma but Is Not Required for Math1-Driven Tumor Formation. Molecular cancer research : MCR, 19(11), 1831-1839. https://doi.org/10.1158/1541-7786.MCR-21-0117
Adolphe, Christelle, et al. "SOX9 Defines Distinct Populations of Cells in SHH Medulloblastoma but Is Not Required for Math1-Driven Tumor Formation." Molecular cancer research : MCR vol. 19,11 (2021): 1831-1839. doi: https://doi.org/10.1158/1541-7786.MCR-21-0117
Adolphe C, Millar A, Kojic M, Barkauskas DS, Sundström A, Swartling FJ, Hediyeh-Zadeh S, Tan CW, Davis MJ, Genovesi LA, Wainwright BJ. SOX9 Defines Distinct Populations of Cells in SHH Medulloblastoma but Is Not Required for Math1-Driven Tumor Formation. Mol Cancer Res. 2021 Nov;19(11):1831-1839. doi: 10.1158/1541-7786.MCR-21-0117. Epub 2021 Jul 30. PMID: 34330843.
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Case Report: Malignant Primary Sellar Paraganglioma With Unusual Genetic and Imaging Features.

Frontiers in oncology

Stojanoski S, Boldt HB, Kozic D, Patócs A, Korbonits M, Medic-Stojanoska M, Casar-Borota O.
PMID: 34888235
Front Oncol. 2021 Nov 23;11:739255. doi: 10.3389/fonc.2021.739255. eCollection 2021.

BACKGROUND: Paraganglioma occurs rarely in the sellar/parasellar region. Here, we report a patient with malignant paraganglioma with primary sellar location with unusual genetic and imaging features.CASE PRESENTATION: A 31-year-old male presented with mild hypertension, headache, nausea, and vomiting. A...

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Stojanoski S, Boldt HB, Kozic D, et al. Case Report: Malignant Primary Sellar Paraganglioma With Unusual Genetic and Imaging Features. Front Oncol. 2021;11:739255doi: 10.3389/fonc.2021.739255.
Stojanoski, S., Boldt, H. B., Kozic, D., Patócs, A., Korbonits, M., Medic-Stojanoska, M., & Casar-Borota, O. (2021). Case Report: Malignant Primary Sellar Paraganglioma With Unusual Genetic and Imaging Features. Frontiers in oncology, 11739255. https://doi.org/10.3389/fonc.2021.739255
Stojanoski, Stefan, et al. "Case Report: Malignant Primary Sellar Paraganglioma With Unusual Genetic and Imaging Features." Frontiers in oncology vol. 11 (2021): 739255. doi: https://doi.org/10.3389/fonc.2021.739255
Stojanoski S, Boldt HB, Kozic D, Patócs A, Korbonits M, Medic-Stojanoska M, Casar-Borota O. Case Report: Malignant Primary Sellar Paraganglioma With Unusual Genetic and Imaging Features. Front Oncol. 2021 Nov 23;11:739255. doi: 10.3389/fonc.2021.739255. eCollection 2021. PMID: 34888235; PMCID: PMC8650633.
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The effects of 6-month hydrogen-rich water intake on molecular and phenotypic biomarkers of aging in older adults aged 70 years and over: A randomized controlled pilot trial.

Experimental gerontology

Zanini D, Todorovic N, Korovljev D, Stajer V, Ostojic J, Purac J, Kojic D, Vukasinovic E, Djordjievski S, Sopic M, Guzonjic A, Ninic A, Erceg S, Ostojic SM.
PMID: 34601077
Exp Gerontol. 2021 Nov;155:111574. doi: 10.1016/j.exger.2021.111574. Epub 2021 Oct 01.

In this randomized controlled pilot trial, we investigated the effects of a 6-month intake of hydrogen-rich water (HRW) on several molecular and phenotypic biomarkers of aging in older adults aged 70 years and over. Forty older adults (20 women)...

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Zanini D, Todorovic N, Korovljev D, et al. The effects of 6-month hydrogen-rich water intake on molecular and phenotypic biomarkers of aging in older adults aged 70 years and over: A randomized controlled pilot trial. Exp Gerontol. 2021;155:111574doi: 10.1016/j.exger.2021.111574.
Zanini, D., Todorovic, N., Korovljev, D., Stajer, V., Ostojic, J., Purac, J., Kojic, D., Vukasinovic, E., Djordjievski, S., Sopic, M., Guzonjic, A., Ninic, A., Erceg, S., & Ostojic, S. M. (2021). The effects of 6-month hydrogen-rich water intake on molecular and phenotypic biomarkers of aging in older adults aged 70 years and over: A randomized controlled pilot trial. Experimental gerontology, 155111574. https://doi.org/10.1016/j.exger.2021.111574
Zanini, Dragana, et al. "The effects of 6-month hydrogen-rich water intake on molecular and phenotypic biomarkers of aging in older adults aged 70 years and over: A randomized controlled pilot trial." Experimental gerontology vol. 155 (2021): 111574. doi: https://doi.org/10.1016/j.exger.2021.111574
Zanini D, Todorovic N, Korovljev D, Stajer V, Ostojic J, Purac J, Kojic D, Vukasinovic E, Djordjievski S, Sopic M, Guzonjic A, Ninic A, Erceg S, Ostojic SM. The effects of 6-month hydrogen-rich water intake on molecular and phenotypic biomarkers of aging in older adults aged 70 years and over: A randomized controlled pilot trial. Exp Gerontol. 2021 Nov;155:111574. doi: 10.1016/j.exger.2021.111574. Epub 2021 Oct 01. PMID: 34601077.
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A design principle for posttranslational chaotic oscillators.

iScience

Yamaguchi HQ, Ode KL, Ueda HR.
PMID: 33437934
iScience. 2020 Dec 15;24(1):101946. doi: 10.1016/j.isci.2020.101946. eCollection 2021 Jan 22.

Chaos behavior has been observed in various cellular and molecular processes. Here, we modeled reversible phosphorylation dynamics to elucidate a design principle for autonomous chaos generation that may arise from generic enzymatic reactions. A comprehensive parameter search demonstrated that...

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Yamaguchi HQ, Ode KL, Ueda HR. A design principle for posttranslational chaotic oscillators. iScience. 2020;24(1):101946doi: 10.1016/j.isci.2020.101946.
Yamaguchi, H. Q., Ode, K. L., & Ueda, H. R. (2021). A design principle for posttranslational chaotic oscillators. iScience, 24(1), 101946. https://doi.org/10.1016/j.isci.2020.101946
Yamaguchi, Hiroto Q, et al. "A design principle for posttranslational chaotic oscillators." iScience vol. 24,1 (2021): 101946. doi: https://doi.org/10.1016/j.isci.2020.101946
Yamaguchi HQ, Ode KL, Ueda HR. A design principle for posttranslational chaotic oscillators. iScience. 2020 Dec 15;24(1):101946. doi: 10.1016/j.isci.2020.101946. eCollection 2021 Jan 22. PMID: 33437934; PMCID: PMC7786127.
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Role of IgM and IgA Antibodies in the Neutralization of SARS-CoV-2.

medRxiv : the preprint server for health sciences

Klingler J, Weiss S, Itri V, Liu X, Oguntuyo KY, Stevens C, Ikegame S, Hung CT, Enyindah-Asonye G, Amanat F, Baine I, Arinsburg S, Bandres JC, Kojic EM, Stoever J, Jurczyszak D, Bermudez-Gonzalez M, Nádas A, Liu S, Lee B, Zolla-Pazner S, Hioe CE.
PMID: 33173891
medRxiv. 2020 Dec 21; doi: 10.1101/2020.08.18.20177303.

BACKGROUND: SARS-CoV-2 has infected millions of people globally. Virus infection requires the receptor-binding domain (RBD) of the spike protein. Although studies have demonstrated anti-spike and - RBD antibodies to be protective in animal models, and convalescent plasma as a...

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Klingler J, Weiss S, Itri V, et al. Role of IgM and IgA Antibodies in the Neutralization of SARS-CoV-2. medRxiv. 2020;doi: 10.1101/2020.08.18.20177303.
Klingler, J., Weiss, S., Itri, V., Liu, X., Oguntuyo, K. Y., Stevens, C., Ikegame, S., Hung, C. T., Enyindah-Asonye, G., Amanat, F., Baine, I., Arinsburg, S., Bandres, J. C., Kojic, E. M., Stoever, J., Jurczyszak, D., Bermudez-Gonzalez, M., Nádas, A., Liu, S., Lee, B., Zolla-Pazner, S., & Hioe, C. E. (2020). Role of IgM and IgA Antibodies in the Neutralization of SARS-CoV-2. medRxiv : the preprint server for health sciences, . https://doi.org/10.1101/2020.08.18.20177303
Klingler, Jéromine, et al. "Role of IgM and IgA Antibodies in the Neutralization of SARS-CoV-2." medRxiv : the preprint server for health sciences vol. (2020). doi: https://doi.org/10.1101/2020.08.18.20177303
Klingler J, Weiss S, Itri V, Liu X, Oguntuyo KY, Stevens C, Ikegame S, Hung CT, Enyindah-Asonye G, Amanat F, Baine I, Arinsburg S, Bandres JC, Kojic EM, Stoever J, Jurczyszak D, Bermudez-Gonzalez M, Nádas A, Liu S, Lee B, Zolla-Pazner S, Hioe CE. Role of IgM and IgA Antibodies in the Neutralization of SARS-CoV-2. medRxiv. 2020 Dec 21; doi: 10.1101/2020.08.18.20177303. PMID: 33173891; PMCID: PMC7654883.
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A Computational Model for Drug Release from PLGA Implant.

Materials (Basel, Switzerland)

Milosevic M, Stojanovic D, Simic V, Milicevic B, Radisavljevic A, Uskokovic P, Kojic M.
PMID: 30501079
Materials (Basel). 2018 Nov 29;11(12). doi: 10.3390/ma11122416.

Due to the relative ease of producing nanofibers with a core⁻shell structure, emulsion electrospinning has been investigated intensively in making nanofibrous drug delivery systems for controlled and sustained release. Predictions of drug release rates from the poly (d,l-lactic-co-glycolic acid)...

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Milosevic M, Stojanovic D, Simic V, et al. A Computational Model for Drug Release from PLGA Implant. Materials (Basel). 2018;11(12)doi: 10.3390/ma11122416.
Milosevic, M., Stojanovic, D., Simic, V., Milicevic, B., Radisavljevic, A., Uskokovic, P., & Kojic, M. (2018). A Computational Model for Drug Release from PLGA Implant. Materials (Basel, Switzerland), 11(12), . https://doi.org/10.3390/ma11122416
Milosevic, Miljan, et al. "A Computational Model for Drug Release from PLGA Implant." Materials (Basel, Switzerland) vol. 11,12 (2018). doi: https://doi.org/10.3390/ma11122416
Milosevic M, Stojanovic D, Simic V, Milicevic B, Radisavljevic A, Uskokovic P, Kojic M. A Computational Model for Drug Release from PLGA Implant. Materials (Basel). 2018 Nov 29;11(12). doi: 10.3390/ma11122416. PMID: 30501079; PMCID: PMC6316994.
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