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What it takes to invade grassland ecosystems: traits, introduction history and filtering processes.

Ecology letters

Carboni M, Münkemüller T, Lavergne S, Choler P, Borgy B, Violle C, Essl F, Roquet C, Munoz F, Thuiller W.
PMID: 26689431
Ecol Lett. 2016 Mar;19(3):219-29. doi: 10.1111/ele.12556. Epub 2015 Dec 22.

Whether the success of alien species can be explained by their functional or phylogenetic characteristics remains unresolved because of data limitations, scale issues and weak quantifications of success. Using permanent grasslands across France (50 000 vegetation plots, 2000 species,...

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Carboni M, Münkemüller T, Lavergne S, et al. What it takes to invade grassland ecosystems: traits, introduction history and filtering processes. Ecol Lett. 2015;19(3):219-29doi: 10.1111/ele.12556.
Carboni, M., Münkemüller, T., Lavergne, S., Choler, P., Borgy, B., Violle, C., Essl, F., Roquet, C., Munoz, F., & Thuiller, W. (2016). What it takes to invade grassland ecosystems: traits, introduction history and filtering processes. Ecology letters, 19(3), 219-29. https://doi.org/10.1111/ele.12556
Carboni, Marta, et al. "What it takes to invade grassland ecosystems: traits, introduction history and filtering processes." Ecology letters vol. 19,3 (2016): 219-29. doi: https://doi.org/10.1111/ele.12556
Carboni M, Münkemüller T, Lavergne S, Choler P, Borgy B, Violle C, Essl F, Roquet C, Munoz F, Thuiller W. What it takes to invade grassland ecosystems: traits, introduction history and filtering processes. Ecol Lett. 2016 Mar;19(3):219-29. doi: 10.1111/ele.12556. Epub 2015 Dec 22. PMID: 26689431; PMCID: PMC4972145.
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Template-Mediated Stabilization of a DNA G-Quadruplex formed in the HIV-1 Promoter and Comparative Binding Studies.

Chemistry (Weinheim an der Bergstrasse, Germany)

Bonnat L, Bar L, Génnaro B, Bonnet H, Jarjayes O, Thomas F, Dejeu J, Defrancq E, Lavergne T.
PMID: 28264144
Chemistry. 2017 Apr 24;23(23):5602-5613. doi: 10.1002/chem.201700417. Epub 2017 Apr 05.

G-rich DNA oligonucleotides derived from the promoter region of the HIV-1 long terminal repeat (LTR) were assembled onto an addressable cyclopeptide platform through sequential oxime ligation, a thiol-iodoacetamide SN2 reaction, and copper-catalyzed azide-alkyne cycloaddition reactions. The resulting conjugate was...

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Bonnat L, Bar L, Génnaro B, et al. Template-Mediated Stabilization of a DNA G-Quadruplex formed in the HIV-1 Promoter and Comparative Binding Studies. Chemistry. 2017;23(23):5602-5613doi: 10.1002/chem.201700417.
Bonnat, L., Bar, L., Génnaro, B., Bonnet, H., Jarjayes, O., Thomas, F., Dejeu, J., Defrancq, E., & Lavergne, T. (2017). Template-Mediated Stabilization of a DNA G-Quadruplex formed in the HIV-1 Promoter and Comparative Binding Studies. Chemistry (Weinheim an der Bergstrasse, Germany), 23(23), 5602-5613. https://doi.org/10.1002/chem.201700417
Bonnat, Laureen, et al. "Template-Mediated Stabilization of a DNA G-Quadruplex formed in the HIV-1 Promoter and Comparative Binding Studies." Chemistry (Weinheim an der Bergstrasse, Germany) vol. 23,23 (2017): 5602-5613. doi: https://doi.org/10.1002/chem.201700417
Bonnat L, Bar L, Génnaro B, Bonnet H, Jarjayes O, Thomas F, Dejeu J, Defrancq E, Lavergne T. Template-Mediated Stabilization of a DNA G-Quadruplex formed in the HIV-1 Promoter and Comparative Binding Studies. Chemistry. 2017 Apr 24;23(23):5602-5613. doi: 10.1002/chem.201700417. Epub 2017 Apr 05. PMID: 28264144.
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In Vitro Research Tools in the Field of Human Immediate Drug Hypersensitivity and Their Present Use in Small Animal Veterinary Medicine.

Veterinary sciences

Lavergne SN.
PMID: 29056660
Vet Sci. 2016 Dec 22;4(1). doi: 10.3390/vetsci4010001.

Drug hypersensitivity reactions (DHR) are immune-mediated idiosyncratic adverse drug events. Type I DHR are often referred to as "immediate" and involve B lymphocyte-secreted IgE that bind to the membrane of basophils and mast cells, inducing their degranulation. This review...

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Lavergne SN. In Vitro Research Tools in the Field of Human Immediate Drug Hypersensitivity and Their Present Use in Small Animal Veterinary Medicine. Vet Sci. 2016;4(1)doi: 10.3390/vetsci4010001.
Lavergne, S. N. (2016). In Vitro Research Tools in the Field of Human Immediate Drug Hypersensitivity and Their Present Use in Small Animal Veterinary Medicine. Veterinary sciences, 4(1), . https://doi.org/10.3390/vetsci4010001
Lavergne, Sidonie N.. "In Vitro Research Tools in the Field of Human Immediate Drug Hypersensitivity and Their Present Use in Small Animal Veterinary Medicine." Veterinary sciences vol. 4,1 (2016). doi: https://doi.org/10.3390/vetsci4010001
Lavergne SN. In Vitro Research Tools in the Field of Human Immediate Drug Hypersensitivity and Their Present Use in Small Animal Veterinary Medicine. Vet Sci. 2016 Dec 22;4(1). doi: 10.3390/vetsci4010001. PMID: 29056660; PMCID: PMC5606612.
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Understanding the evolution of holoparasitic plants: the complete plastid genome of the holoparasite Cytinus hypocistis (Cytinaceae).

Annals of botany

Roquet C, Coissac É, Cruaud C, Boleda M, Boyer F, Alberti A, Gielly L, Taberlet P, Thuiller W, Van Es J, Lavergne S.
PMID: 27443299
Ann Bot. 2016 Oct 01;118(5):885-896. doi: 10.1093/aob/mcw135.

Background and Aims Plant plastid genomes are highly conserved in size, gene content and structure; however, parasitic plants are a noticeable exception to this evolutionary stability. Although the evolution of parasites could help to better understand plastome evolution in...

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Roquet C, Coissac É, Cruaud C, et al. Understanding the evolution of holoparasitic plants: the complete plastid genome of the holoparasite Cytinus hypocistis (Cytinaceae). Ann Bot. 2016;118(5):885-896doi: 10.1093/aob/mcw135.
Roquet, C., Coissac, �. �., Cruaud, C., Boleda, M., Boyer, F., Alberti, A., Gielly, L., Taberlet, P., Thuiller, W., Van Es, J., & Lavergne, S. (2016). Understanding the evolution of holoparasitic plants: the complete plastid genome of the holoparasite Cytinus hypocistis (Cytinaceae). Annals of botany, 118(5), 885-896. https://doi.org/10.1093/aob/mcw135
Roquet, Cristina, et al. "Understanding the evolution of holoparasitic plants: the complete plastid genome of the holoparasite Cytinus hypocistis (Cytinaceae)." Annals of botany vol. 118,5 (2016): 885-896. doi: https://doi.org/10.1093/aob/mcw135
Roquet C, Coissac É, Cruaud C, Boleda M, Boyer F, Alberti A, Gielly L, Taberlet P, Thuiller W, Van Es J, Lavergne S. Understanding the evolution of holoparasitic plants: the complete plastid genome of the holoparasite Cytinus hypocistis (Cytinaceae). Ann Bot. 2016 Oct 01;118(5):885-896. doi: 10.1093/aob/mcw135. PMID: 27443299; PMCID: PMC5055816.
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Spur reactions observed by picosecond pulse radiolysis in highly concentrated bromide aqueous solutions.

The journal of physical chemistry. A

El Omar AK, Schmidhammer U, Balcerzyk A, LaVerne J, Mostafavi M.
PMID: 23441977
J Phys Chem A. 2013 Mar 21;117(11):2287-93. doi: 10.1021/jp312023r. Epub 2013 Mar 12.

The formation of the well-known product Br3(-), observed in the steady-state radiolysis of highly concentrated Br(-) aqueous solutions, has now been directly observed at ultrashort times corresponding to the relaxation of the spur. The transient absorption induced by picosecond...

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El Omar AK, Schmidhammer U, Balcerzyk A, et al. Spur reactions observed by picosecond pulse radiolysis in highly concentrated bromide aqueous solutions. J Phys Chem A. 2013;117(11):2287-93doi: 10.1021/jp312023r.
El Omar, A. K., Schmidhammer, U., Balcerzyk, A., LaVerne, J., & Mostafavi, M. (2013). Spur reactions observed by picosecond pulse radiolysis in highly concentrated bromide aqueous solutions. The journal of physical chemistry. A, 117(11), 2287-93. https://doi.org/10.1021/jp312023r
El Omar, Abdel Karim, et al. "Spur reactions observed by picosecond pulse radiolysis in highly concentrated bromide aqueous solutions." The journal of physical chemistry. A vol. 117,11 (2013): 2287-93. doi: https://doi.org/10.1021/jp312023r
El Omar AK, Schmidhammer U, Balcerzyk A, LaVerne J, Mostafavi M. Spur reactions observed by picosecond pulse radiolysis in highly concentrated bromide aqueous solutions. J Phys Chem A. 2013 Mar 21;117(11):2287-93. doi: 10.1021/jp312023r. Epub 2013 Mar 12. PMID: 23441977.
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Spatial mismatch of phylogenetic diversity across three vertebrate groups and protected areas in Europe.

Diversity & distributions

Zupan L, Cabeza M, Maiorano L, Roquet C, Devictor V, Lavergne S, Mouillot D, Mouquet N, Renaud J, Thuiller W.
PMID: 24791146
Divers Distrib. 2014 Jun 01;20(6):674-685. doi: 10.1111/ddi.12186.

AIM: We investigate patterns of phylogenetic diversity in relation to species diversity for European birds, mammals and amphibians, to evaluate their congruence and highlight areas of particular evolutionary history. We estimate the extent to which the European network of...

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Zupan L, Cabeza M, Maiorano L, et al. Spatial mismatch of phylogenetic diversity across three vertebrate groups and protected areas in Europe. Divers Distrib. 2014;20(6):674-685doi: 10.1111/ddi.12186.
Zupan, L., Cabeza, M., Maiorano, L., Roquet, C., Devictor, V., Lavergne, S., Mouillot, D., Mouquet, N., Renaud, J., & Thuiller, W. (2014). Spatial mismatch of phylogenetic diversity across three vertebrate groups and protected areas in Europe. Diversity & distributions, 20(6), 674-685. https://doi.org/10.1111/ddi.12186
Zupan, Laure, et al. "Spatial mismatch of phylogenetic diversity across three vertebrate groups and protected areas in Europe." Diversity & distributions vol. 20,6 (2014): 674-685. doi: https://doi.org/10.1111/ddi.12186
Zupan L, Cabeza M, Maiorano L, Roquet C, Devictor V, Lavergne S, Mouillot D, Mouquet N, Renaud J, Thuiller W. Spatial mismatch of phylogenetic diversity across three vertebrate groups and protected areas in Europe. Divers Distrib. 2014 Jun 01;20(6):674-685. doi: 10.1111/ddi.12186. PMID: 24791146; PMCID: PMC4001079.
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Human-aided admixture may fuel ecosystem transformation during biological invasions: theoretical and experimental evidence.

Ecology and evolution

Molofsky J, Keller SR, Lavergne S, Kaproth MA, Eppinga MB.
PMID: 24772269
Ecol Evol. 2014 Apr;4(7):899-910. doi: 10.1002/ece3.966. Epub 2014 Feb 23.

Biological invasions can transform our understanding of how the interplay of historical isolation and contemporary (human-aided) dispersal affects the structure of intraspecific diversity in functional traits, and in turn, how changes in functional traits affect other scales of biological...

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Molofsky J, Keller SR, Lavergne S, et al. Human-aided admixture may fuel ecosystem transformation during biological invasions: theoretical and experimental evidence. Ecol Evol. 2014;4(7):899-910doi: 10.1002/ece3.966.
Molofsky, J., Keller, S. R., Lavergne, S., Kaproth, M. A., & Eppinga, M. B. (2014). Human-aided admixture may fuel ecosystem transformation during biological invasions: theoretical and experimental evidence. Ecology and evolution, 4(7), 899-910. https://doi.org/10.1002/ece3.966
Molofsky, Jane, et al. "Human-aided admixture may fuel ecosystem transformation during biological invasions: theoretical and experimental evidence." Ecology and evolution vol. 4,7 (2014): 899-910. doi: https://doi.org/10.1002/ece3.966
Molofsky J, Keller SR, Lavergne S, Kaproth MA, Eppinga MB. Human-aided admixture may fuel ecosystem transformation during biological invasions: theoretical and experimental evidence. Ecol Evol. 2014 Apr;4(7):899-910. doi: 10.1002/ece3.966. Epub 2014 Feb 23. PMID: 24772269; PMCID: PMC3997308.
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Unravelling the architecture of functional variability in wild populations of .

Functional ecology

Boucher FC, Thuiller W, Arnoldi C, Albert CH, Lavergne S.
PMID: 24790285
Funct Ecol. 2013 Apr 01;27(2):382-391. doi: 10.1111/1365-2435.12034.

Functional variability (FV) of populations can be decomposed into three main features: the individual variability of multiple traits, the strength of correlations between those traits and the main direction of these correlations, the latter two being known as 'phenotypic...

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Boucher FC, Thuiller W, Arnoldi C, et al. Unravelling the architecture of functional variability in wild populations of . Funct Ecol. 2013;27(2):382-391doi: 10.1111/1365-2435.12034.
Boucher, F. C., Thuiller, W., Arnoldi, C., Albert, C. H., & Lavergne, S. (2013). Unravelling the architecture of functional variability in wild populations of . Functional ecology, 27(2), 382-391. https://doi.org/10.1111/1365-2435.12034
Boucher, Florian C, et al. "Unravelling the architecture of functional variability in wild populations of ." Functional ecology vol. 27,2 (2013): 382-391. doi: https://doi.org/10.1111/1365-2435.12034
Boucher FC, Thuiller W, Arnoldi C, Albert CH, Lavergne S. Unravelling the architecture of functional variability in wild populations of . Funct Ecol. 2013 Apr 01;27(2):382-391. doi: 10.1111/1365-2435.12034. PMID: 24790285; PMCID: PMC4001464.
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Combining an expert-based medical entity recognizer to a machine-learning system: methods and a case study.

Biomedical informatics insights

Zweigenbaum P, Lavergne T, Grabar N, Hamon T, Rosset S, Grouin C.
PMID: 24052691
Biomed Inform Insights. 2013 Aug 01;6:51-62. doi: 10.4137/BII.S11770. eCollection 2013.

Medical entity recognition is currently generally performed by data-driven methods based on supervised machine learning. Expert-based systems, where linguistic and domain expertise are directly provided to the system are often combined with data-driven systems. We present here a case...

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Zweigenbaum P, Lavergne T, Grabar N, et al. Combining an expert-based medical entity recognizer to a machine-learning system: methods and a case study. Biomed Inform Insights. 2013;6:51-62doi: 10.4137/BII.S11770.
Zweigenbaum, P., Lavergne, T., Grabar, N., Hamon, T., Rosset, S., & Grouin, C. (2013). Combining an expert-based medical entity recognizer to a machine-learning system: methods and a case study. Biomedical informatics insights, 651-62. https://doi.org/10.4137/BII.S11770
Zweigenbaum, Pierre, et al. "Combining an expert-based medical entity recognizer to a machine-learning system: methods and a case study." Biomedical informatics insights vol. 6 (2013): 51-62. doi: https://doi.org/10.4137/BII.S11770
Zweigenbaum P, Lavergne T, Grabar N, Hamon T, Rosset S, Grouin C. Combining an expert-based medical entity recognizer to a machine-learning system: methods and a case study. Biomed Inform Insights. 2013 Aug 01;6:51-62. doi: 10.4137/BII.S11770. eCollection 2013. PMID: 24052691; PMCID: PMC3776026.
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Microbes on the cliff: alpine cushion plants structure bacterial and fungal communities.

Frontiers in microbiology

Roy J, Albert CH, Ibanez S, Saccone P, Zinger L, Choler P, Clément JC, Lavergne S, Geremia RA.
PMID: 23543612
Front Microbiol. 2013 Mar 27;4:64. doi: 10.3389/fmicb.2013.00064. eCollection 2013.

Plants affect the spatial distribution of soil microorganisms, but the influence of the local abiotic context is poorly documented. We investigated the effect of a single plant species, the cushion plant Silene acaulis, on habitat conditions, and microbial community....

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Roy J, Albert CH, Ibanez S, et al. Microbes on the cliff: alpine cushion plants structure bacterial and fungal communities. Front Microbiol. 2013;4:64doi: 10.3389/fmicb.2013.00064.
Roy, J., Albert, C. H., Ibanez, S., Saccone, P., Zinger, L., Choler, P., Clément, J. C., Lavergne, S., & Geremia, R. A. (2013). Microbes on the cliff: alpine cushion plants structure bacterial and fungal communities. Frontiers in microbiology, 464. https://doi.org/10.3389/fmicb.2013.00064
Roy, J, et al. "Microbes on the cliff: alpine cushion plants structure bacterial and fungal communities." Frontiers in microbiology vol. 4 (2013): 64. doi: https://doi.org/10.3389/fmicb.2013.00064
Roy J, Albert CH, Ibanez S, Saccone P, Zinger L, Choler P, Clément JC, Lavergne S, Geremia RA. Microbes on the cliff: alpine cushion plants structure bacterial and fungal communities. Front Microbiol. 2013 Mar 27;4:64. doi: 10.3389/fmicb.2013.00064. eCollection 2013. PMID: 23543612; PMCID: PMC3608923.
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Determining local geometrical features of grain boundaries from microscopy.

Journal of physics. Condensed matter : an Institute of Physics journal

Lavergne FA, Aarts DG, Dullens RP.
PMID: 25923833
J Phys Condens Matter. 2015 May 20;27(19):194117. doi: 10.1088/0953-8984/27/19/194117. Epub 2015 Apr 29.

Grain boundaries are solid-solid interfaces whose dynamics is driven by their local curvature. As they are fluctuating interfaces and have a width comparable to the lattice spacing of the surrounding grains, the determination of their local geometrical characteristics is...

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Lavergne FA, Aarts DG, Dullens RP. Determining local geometrical features of grain boundaries from microscopy. J Phys Condens Matter. 2015;27(19):194117doi: 10.1088/0953-8984/27/19/194117.
Lavergne, F. A., Aarts, D. G., & Dullens, R. P. (2015). Determining local geometrical features of grain boundaries from microscopy. Journal of physics. Condensed matter : an Institute of Physics journal, 27(19), 194117. https://doi.org/10.1088/0953-8984/27/19/194117
Lavergne, François A, et al. "Determining local geometrical features of grain boundaries from microscopy." Journal of physics. Condensed matter : an Institute of Physics journal vol. 27,19 (2015): 194117. doi: https://doi.org/10.1088/0953-8984/27/19/194117
Lavergne FA, Aarts DG, Dullens RP. Determining local geometrical features of grain boundaries from microscopy. J Phys Condens Matter. 2015 May 20;27(19):194117. doi: 10.1088/0953-8984/27/19/194117. Epub 2015 Apr 29. PMID: 25923833.
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Uranium removal from seawater by means of polymeric fabrics grafted with diallyl oxalate through a single-step, solvent-free process.

Industrial & engineering chemistry research

Dietz TC, Tomaszewski CE, Tsinas Z, Poster D, Barkatt A, Adel-Hadadi M, Bateman FB, Cumberland LT, Schneider E, Gaskell K, LaVerne J, Al-Sheikhly M.
PMID: 29720786
Ind Eng Chem Res. 2016 Apr 20;55(15):4179-5214. doi: 10.1021/acs.iecr.5b03401. Epub 2015 Dec 04.

In order to test the effectiveness of oxalate-based polymeric adsorbents in the recovery of uranium from seawater, diallyl oxalate (DAOx) was grafted onto nylon 6 fabrics by exposing the fabric, immersed in pure liquid DAOx or in a surfactant-stabilized...

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Dietz TC, Tomaszewski CE, Tsinas Z, et al. Uranium removal from seawater by means of polymeric fabrics grafted with diallyl oxalate through a single-step, solvent-free process. Ind Eng Chem Res. 2015;55(15):4179-5214doi: 10.1021/acs.iecr.5b03401.
Dietz, T. C., Tomaszewski, C. E., Tsinas, Z., Poster, D., Barkatt, A., Adel-Hadadi, M., Bateman, F. B., Cumberland, L. T., Schneider, E., Gaskell, K., LaVerne, J., & Al-Sheikhly, M. (2016). Uranium removal from seawater by means of polymeric fabrics grafted with diallyl oxalate through a single-step, solvent-free process. Industrial & engineering chemistry research, 55(15), 4179-5214. https://doi.org/10.1021/acs.iecr.5b03401
Dietz, Travis C, et al. "Uranium removal from seawater by means of polymeric fabrics grafted with diallyl oxalate through a single-step, solvent-free process." Industrial & engineering chemistry research vol. 55,15 (2016): 4179-5214. doi: https://doi.org/10.1021/acs.iecr.5b03401
Dietz TC, Tomaszewski CE, Tsinas Z, Poster D, Barkatt A, Adel-Hadadi M, Bateman FB, Cumberland LT, Schneider E, Gaskell K, LaVerne J, Al-Sheikhly M. Uranium removal from seawater by means of polymeric fabrics grafted with diallyl oxalate through a single-step, solvent-free process. Ind Eng Chem Res. 2016 Apr 20;55(15):4179-5214. doi: 10.1021/acs.iecr.5b03401. Epub 2015 Dec 04. PMID: 29720786; PMCID: PMC5927380.
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Showing 1 to 12 of 256 entries