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Preanalytical Procedures for DNA Studies: The Experience of the Interinstitutional Multidisciplinary BioBank (BioBIM).

Biopreservation and biobanking

Palmirotta R, Ludovici G, De Marchis ML, Savonarola A, Leone B, Spila A, De Angelis F, Della Morte D, Ferroni P, Guadagni F.
PMID: 24850204
Biopreserv Biobank. 2011 Mar;9(1):35-45. doi: 10.1089/bio.2010.0027.

Preanalytical variables, including the anticoagulants and stabilizing agents, time, storage temperature, and methods of DNA extraction applied to blood samples, may affect quality and quantity of isolated nucleic acids for future genomic applications. Considering the large number of collected...

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Palmirotta R, Ludovici G, De Marchis ML, et al. Preanalytical Procedures for DNA Studies: The Experience of the Interinstitutional Multidisciplinary BioBank (BioBIM). Biopreserv Biobank. 2011;9(1):35-45doi: 10.1089/bio.2010.0027.
Palmirotta, R., Ludovici, G., De Marchis, M. L., Savonarola, A., Leone, B., Spila, A., De Angelis, F., Della Morte, D., Ferroni, P., & Guadagni, F. (2011). Preanalytical Procedures for DNA Studies: The Experience of the Interinstitutional Multidisciplinary BioBank (BioBIM). Biopreservation and biobanking, 9(1), 35-45. https://doi.org/10.1089/bio.2010.0027
Palmirotta, Raffaele, et al. "Preanalytical Procedures for DNA Studies: The Experience of the Interinstitutional Multidisciplinary BioBank (BioBIM)." Biopreservation and biobanking vol. 9,1 (2011): 35-45. doi: https://doi.org/10.1089/bio.2010.0027
Palmirotta R, Ludovici G, De Marchis ML, Savonarola A, Leone B, Spila A, De Angelis F, Della Morte D, Ferroni P, Guadagni F. Preanalytical Procedures for DNA Studies: The Experience of the Interinstitutional Multidisciplinary BioBank (BioBIM). Biopreserv Biobank. 2011 Mar;9(1):35-45. doi: 10.1089/bio.2010.0027. PMID: 24850204.
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UAV-Based Thermal Imaging for High-Throughput Field Phenotyping of Black Poplar Response to Drought.

Frontiers in plant science

Ludovisi R, Tauro F, Salvati R, Khoury S, Mugnozza Scarascia G, Harfouche A.
PMID: 29021803
Front Plant Sci. 2017 Sep 27;8:1681. doi: 10.3389/fpls.2017.01681. eCollection 2017.

Poplars are fast-growing, high-yielding forest tree species, whose cultivation as second-generation biofuel crops is of increasing interest and can efficiently meet emission reduction goals. Yet, breeding elite poplar trees for drought resistance remains a major challenge. Worldwide breeding programs...

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Ludovisi R, Tauro F, Salvati R, et al. UAV-Based Thermal Imaging for High-Throughput Field Phenotyping of Black Poplar Response to Drought. Front Plant Sci. 2017;8:1681doi: 10.3389/fpls.2017.01681.
Ludovisi, R., Tauro, F., Salvati, R., Khoury, S., Mugnozza Scarascia, G., & Harfouche, A. (2017). UAV-Based Thermal Imaging for High-Throughput Field Phenotyping of Black Poplar Response to Drought. Frontiers in plant science, 81681. https://doi.org/10.3389/fpls.2017.01681
Ludovisi, Riccardo, et al. "UAV-Based Thermal Imaging for High-Throughput Field Phenotyping of Black Poplar Response to Drought." Frontiers in plant science vol. 8 (2017): 1681. doi: https://doi.org/10.3389/fpls.2017.01681
Ludovisi R, Tauro F, Salvati R, Khoury S, Mugnozza Scarascia G, Harfouche A. UAV-Based Thermal Imaging for High-Throughput Field Phenotyping of Black Poplar Response to Drought. Front Plant Sci. 2017 Sep 27;8:1681. doi: 10.3389/fpls.2017.01681. eCollection 2017. PMID: 29021803; PMCID: PMC5623950.
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Lipids in Aspergillus flavus-maize interaction.

Frontiers in microbiology

Scarpari M, Punelli M, Scala V, Zaccaria M, Nobili C, Ludovici M, Camera E, Fabbri AA, Reverberi M, Fanelli C.
PMID: 24578700
Front Microbiol. 2014 Feb 27;5:74. doi: 10.3389/fmicb.2014.00074. eCollection 2014.

In some filamentous fungi, the pathways related to the oxidative stress and oxylipins production are involved both in the process of host-recognition and in the pathogenic phase. In fact, recent studies have shown that the production of oxylipins in...

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Scarpari M, Punelli M, Scala V, et al. Lipids in Aspergillus flavus-maize interaction. Front Microbiol. 2014;5:74doi: 10.3389/fmicb.2014.00074.
Scarpari, M., Punelli, M., Scala, V., Zaccaria, M., Nobili, C., Ludovici, M., Camera, E., Fabbri, A. A., Reverberi, M., & Fanelli, C. (2014). Lipids in Aspergillus flavus-maize interaction. Frontiers in microbiology, 574. https://doi.org/10.3389/fmicb.2014.00074
Scarpari, Marzia, et al. "Lipids in Aspergillus flavus-maize interaction." Frontiers in microbiology vol. 5 (2014): 74. doi: https://doi.org/10.3389/fmicb.2014.00074
Scarpari M, Punelli M, Scala V, Zaccaria M, Nobili C, Ludovici M, Camera E, Fabbri AA, Reverberi M, Fanelli C. Lipids in Aspergillus flavus-maize interaction. Front Microbiol. 2014 Feb 27;5:74. doi: 10.3389/fmicb.2014.00074. eCollection 2014. PMID: 24578700; PMCID: PMC3936598.
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Prognostic Role of Circulating miRNAs in Early-Stage Non-Small Cell Lung Cancer.

Journal of clinical medicine

Ulivi P, Petracci E, Marisi G, Baglivo S, Chiari R, Billi M, Canale M, Pasini L, Racanicchi S, Vagheggini A, Delmonte A, Mariotti M, Ludovini V, Bonafè M, Crinò L, Grignani F.
PMID: 30678026
J Clin Med. 2019 Jan 23;8(2). doi: 10.3390/jcm8020131.

Non-small cell lung cancer (NSCLC) is the primary cause of cancer-related death worldwide, with a low 5-year survival rate even in fully resected early-stage disease. Novel biomarkers to identify patients at higher risk of relapse are needed. We studied...

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Ulivi P, Petracci E, Marisi G, et al. Prognostic Role of Circulating miRNAs in Early-Stage Non-Small Cell Lung Cancer. J Clin Med. 2019;8(2)doi: 10.3390/jcm8020131.
Ulivi, P., Petracci, E., Marisi, G., Baglivo, S., Chiari, R., Billi, M., Canale, M., Pasini, L., Racanicchi, S., Vagheggini, A., Delmonte, A., Mariotti, M., Ludovini, V., Bonafè, M., Crinò, L., & Grignani, F. (2019). Prognostic Role of Circulating miRNAs in Early-Stage Non-Small Cell Lung Cancer. Journal of clinical medicine, 8(2), . https://doi.org/10.3390/jcm8020131
Ulivi, Paola, et al. "Prognostic Role of Circulating miRNAs in Early-Stage Non-Small Cell Lung Cancer." Journal of clinical medicine vol. 8,2 (2019). doi: https://doi.org/10.3390/jcm8020131
Ulivi P, Petracci E, Marisi G, Baglivo S, Chiari R, Billi M, Canale M, Pasini L, Racanicchi S, Vagheggini A, Delmonte A, Mariotti M, Ludovini V, Bonafè M, Crinò L, Grignani F. Prognostic Role of Circulating miRNAs in Early-Stage Non-Small Cell Lung Cancer. J Clin Med. 2019 Jan 23;8(2). doi: 10.3390/jcm8020131. PMID: 30678026; PMCID: PMC6407000.
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Erratum to: 'Conditional robustness analysis for fragility discovery and target identification in biochemical networks and in cancer systems biology'.

BMC systems biology

Bianconi F, Baldelli E, Ludovini V, Petricoin EF, Crinò L, Valigi P.
PMID: 26935321
BMC Syst Biol. 2016 Mar 02;10:24. doi: 10.1186/s12918-016-0267-2.

No abstract available.

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Bianconi F, Baldelli E, Ludovini V, et al. Erratum to: 'Conditional robustness analysis for fragility discovery and target identification in biochemical networks and in cancer systems biology'. BMC Syst Biol. 2016;10:24doi: 10.1186/s12918-016-0267-2.
Bianconi, F., Baldelli, E., Ludovini, V., Petricoin, E. F., Crinò, L., & Valigi, P. (2016). Erratum to: 'Conditional robustness analysis for fragility discovery and target identification in biochemical networks and in cancer systems biology'. BMC systems biology, 1024. https://doi.org/10.1186/s12918-016-0267-2
Bianconi, Fortunato, et al. "Erratum to: 'Conditional robustness analysis for fragility discovery and target identification in biochemical networks and in cancer systems biology'." BMC systems biology vol. 10 (2016): 24. doi: https://doi.org/10.1186/s12918-016-0267-2
Bianconi F, Baldelli E, Ludovini V, Petricoin EF, Crinò L, Valigi P. Erratum to: 'Conditional robustness analysis for fragility discovery and target identification in biochemical networks and in cancer systems biology'. BMC Syst Biol. 2016 Mar 02;10:24. doi: 10.1186/s12918-016-0267-2. PMID: 26935321; PMCID: PMC4774129.
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RET Rearrangement as a Predictor of Unresponsiveness to Immunotherapy in Non-Small Cell Lung Cancer: Report of Two Cases with Review of the Literature.

Oncology and therapy

Baglivo S, Ludovini V, Moretti R, Bellezza G, Sidoni A, Roila F, Metro G.
PMID: 32700042
Oncol Ther. 2020 Dec;8(2):333-339. doi: 10.1007/s40487-020-00116-2. Epub 2020 May 20.

Patients with epidermal growth factor receptor and anaplastic lymphoma kinase positive non-small cell lung cancer (NSCLC) generally respond poorly to treatment with immune checkpoint inhibitors such as anti-programmed cell death-1 (PD-1) or anti-programmed cell death ligand-1 (PD-L1) given with...

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Baglivo S, Ludovini V, Moretti R, et al. RET Rearrangement as a Predictor of Unresponsiveness to Immunotherapy in Non-Small Cell Lung Cancer: Report of Two Cases with Review of the Literature. Oncol Ther. 2020;8(2):333-339doi: 10.1007/s40487-020-00116-2.
Baglivo, S., Ludovini, V., Moretti, R., Bellezza, G., Sidoni, A., Roila, F., & Metro, G. (2020). RET Rearrangement as a Predictor of Unresponsiveness to Immunotherapy in Non-Small Cell Lung Cancer: Report of Two Cases with Review of the Literature. Oncology and therapy, 8(2), 333-339. https://doi.org/10.1007/s40487-020-00116-2
Baglivo, Sara, et al. "RET Rearrangement as a Predictor of Unresponsiveness to Immunotherapy in Non-Small Cell Lung Cancer: Report of Two Cases with Review of the Literature." Oncology and therapy vol. 8,2 (2020): 333-339. doi: https://doi.org/10.1007/s40487-020-00116-2
Baglivo S, Ludovini V, Moretti R, Bellezza G, Sidoni A, Roila F, Metro G. RET Rearrangement as a Predictor of Unresponsiveness to Immunotherapy in Non-Small Cell Lung Cancer: Report of Two Cases with Review of the Literature. Oncol Ther. 2020 Dec;8(2):333-339. doi: 10.1007/s40487-020-00116-2. Epub 2020 May 20. PMID: 32700042; PMCID: PMC7683679.
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A fully automated assay to detect the expression of pan-cytokeratins and of EML4-ALK fusion protein in circulating tumour cells (CTCs) predicts outcome of non-small cell lung cancer (NSCLC) patients.

Translational lung cancer research

Rossi E, Aieta M, Tartarone A, Pezzuto A, Facchinetti A, Santini D, Ulivi P, Ludovini V, Possidente L, Fiduccia P, Minicuci N, Zamarchi R.
PMID: 33569295
Transl Lung Cancer Res. 2021 Jan;10(1):80-92. doi: 10.21037/tlcr-20-855.

BACKGROUND: In advanced non-small cell lung cancer (NSCLC) a recent meta-analysis confirms circulating tumour cells (CTCs) as an independent prognostic indicator of progression-free survival (PFS) and overall survival (OS). However, further investigations are necessary to predict and dynamically monitor...

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Rossi E, Aieta M, Tartarone A, et al. A fully automated assay to detect the expression of pan-cytokeratins and of EML4-ALK fusion protein in circulating tumour cells (CTCs) predicts outcome of non-small cell lung cancer (NSCLC) patients. Transl Lung Cancer Res. 2021;10(1):80-92doi: 10.21037/tlcr-20-855.
Rossi, E., Aieta, M., Tartarone, A., Pezzuto, A., Facchinetti, A., Santini, D., Ulivi, P., Ludovini, V., Possidente, L., Fiduccia, P., Minicuci, N., & Zamarchi, R. (2021). A fully automated assay to detect the expression of pan-cytokeratins and of EML4-ALK fusion protein in circulating tumour cells (CTCs) predicts outcome of non-small cell lung cancer (NSCLC) patients. Translational lung cancer research, 10(1), 80-92. https://doi.org/10.21037/tlcr-20-855
Rossi, Elisabetta, et al. "A fully automated assay to detect the expression of pan-cytokeratins and of EML4-ALK fusion protein in circulating tumour cells (CTCs) predicts outcome of non-small cell lung cancer (NSCLC) patients." Translational lung cancer research vol. 10,1 (2021): 80-92. doi: https://doi.org/10.21037/tlcr-20-855
Rossi E, Aieta M, Tartarone A, Pezzuto A, Facchinetti A, Santini D, Ulivi P, Ludovini V, Possidente L, Fiduccia P, Minicuci N, Zamarchi R. A fully automated assay to detect the expression of pan-cytokeratins and of EML4-ALK fusion protein in circulating tumour cells (CTCs) predicts outcome of non-small cell lung cancer (NSCLC) patients. Transl Lung Cancer Res. 2021 Jan;10(1):80-92. doi: 10.21037/tlcr-20-855. PMID: 33569295; PMCID: PMC7867748.
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The detection of anti-Trichinella antibodies in free-ranging Nebrodi Regional Park black pigs from Sicily, Italy, suggests the circulation of Trichinella britovi in the island.

Veterinary parasitology, regional studies and reports

Pozio E, Di Marco Lo Presti V, Vicari D, Ludovisi A, Ciarello FP, Amati M, Ippolito D, Vesco G, Gómez-Morales MA.
PMID: 34024394
Vet Parasitol Reg Stud Reports. 2021 Apr;24:100578. doi: 10.1016/j.vprsr.2021.100578. Epub 2021 Apr 21.

No abstract available.

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Pozio E, Di Marco Lo Presti V, Vicari D, et al. The detection of anti-Trichinella antibodies in free-ranging Nebrodi Regional Park black pigs from Sicily, Italy, suggests the circulation of Trichinella britovi in the island. Vet Parasitol Reg Stud Reports. 2021;24:100578doi: 10.1016/j.vprsr.2021.100578.
Pozio, E., Di Marco Lo Presti, V., Vicari, D., Ludovisi, A., Ciarello, F. P., Amati, M., Ippolito, D., Vesco, G., & Gómez-Morales, M. A. (2021). The detection of anti-Trichinella antibodies in free-ranging Nebrodi Regional Park black pigs from Sicily, Italy, suggests the circulation of Trichinella britovi in the island. Veterinary parasitology, regional studies and reports, 24100578. https://doi.org/10.1016/j.vprsr.2021.100578
Pozio, Edoardo, et al. "The detection of anti-Trichinella antibodies in free-ranging Nebrodi Regional Park black pigs from Sicily, Italy, suggests the circulation of Trichinella britovi in the island." Veterinary parasitology, regional studies and reports vol. 24 (2021): 100578. doi: https://doi.org/10.1016/j.vprsr.2021.100578
Pozio E, Di Marco Lo Presti V, Vicari D, Ludovisi A, Ciarello FP, Amati M, Ippolito D, Vesco G, Gómez-Morales MA. The detection of anti-Trichinella antibodies in free-ranging Nebrodi Regional Park black pigs from Sicily, Italy, suggests the circulation of Trichinella britovi in the island. Vet Parasitol Reg Stud Reports. 2021 Apr;24:100578. doi: 10.1016/j.vprsr.2021.100578. Epub 2021 Apr 21. PMID: 34024394.
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INSL4 as prognostic marker for proliferation and invasiveness in Non-Small-Cell Lung Cancer.

Journal of Cancer

Scopetti D, Piobbico D, Brunacci C, Pieroni S, Bellezza G, Castelli M, Ludovini V, Tofanetti FR, Cagini L, Sidoni A, Puxeddu E, Della-Fazia MA, Servillo G.
PMID: 34093787
J Cancer. 2021 May 05;12(13):3781-3795. doi: 10.7150/jca.51332. eCollection 2021.

Non-small-cell-lung cancer accounts for 80-85% of all forms of lung cancer as leading cause of cancer-related death in human. Despite remarkable advances in the diagnosis and therapy of lung cancer, no significant improvements have thus far been achieved in...

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Scopetti D, Piobbico D, Brunacci C, et al. INSL4 as prognostic marker for proliferation and invasiveness in Non-Small-Cell Lung Cancer. J Cancer. 2021;12(13):3781-3795doi: 10.7150/jca.51332.
Scopetti, D., Piobbico, D., Brunacci, C., Pieroni, S., Bellezza, G., Castelli, M., Ludovini, V., Tofanetti, F. R., Cagini, L., Sidoni, A., Puxeddu, E., Della-Fazia, M. A., & Servillo, G. (2021). INSL4 as prognostic marker for proliferation and invasiveness in Non-Small-Cell Lung Cancer. Journal of Cancer, 12(13), 3781-3795. https://doi.org/10.7150/jca.51332
Scopetti, Damiano, et al. "INSL4 as prognostic marker for proliferation and invasiveness in Non-Small-Cell Lung Cancer." Journal of Cancer vol. 12,13 (2021): 3781-3795. doi: https://doi.org/10.7150/jca.51332
Scopetti D, Piobbico D, Brunacci C, Pieroni S, Bellezza G, Castelli M, Ludovini V, Tofanetti FR, Cagini L, Sidoni A, Puxeddu E, Della-Fazia MA, Servillo G. INSL4 as prognostic marker for proliferation and invasiveness in Non-Small-Cell Lung Cancer. J Cancer. 2021 May 05;12(13):3781-3795. doi: 10.7150/jca.51332. eCollection 2021. PMID: 34093787; PMCID: PMC8176261.
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Wild-Type KRAS Allele Effects on Druggable Targets in KRAS Mutant Lung Adenocarcinomas.

Genes

Baldelli E, El Gazzah E, Moran JC, Hodge KA, Manojlovic Z, Bassiouni R, Carpten JD, Ludovini V, Baglivo S, Crinò L, Bianconi F, Dong T, Loffredo J, Petricoin EF, Pierobon M.
PMID: 34573384
Genes (Basel). 2021 Sep 11;12(9). doi: 10.3390/genes12091402.

No abstract available.

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Baldelli E, El Gazzah E, Moran JC, et al. Wild-Type KRAS Allele Effects on Druggable Targets in KRAS Mutant Lung Adenocarcinomas. Genes (Basel). 2021;12(9)doi: 10.3390/genes12091402.
Baldelli, E., El Gazzah, E., Moran, J. C., Hodge, K. A., Manojlovic, Z., Bassiouni, R., Carpten, J. D., Ludovini, V., Baglivo, S., Crinò, L., Bianconi, F., Dong, T., Loffredo, J., Petricoin, E. F., & Pierobon, M. (2021). Wild-Type KRAS Allele Effects on Druggable Targets in KRAS Mutant Lung Adenocarcinomas. Genes, 12(9), . https://doi.org/10.3390/genes12091402
Baldelli, Elisa, et al. "Wild-Type KRAS Allele Effects on Druggable Targets in KRAS Mutant Lung Adenocarcinomas." Genes vol. 12,9 (2021). doi: https://doi.org/10.3390/genes12091402
Baldelli E, El Gazzah E, Moran JC, Hodge KA, Manojlovic Z, Bassiouni R, Carpten JD, Ludovini V, Baglivo S, Crinò L, Bianconi F, Dong T, Loffredo J, Petricoin EF, Pierobon M. Wild-Type KRAS Allele Effects on Druggable Targets in KRAS Mutant Lung Adenocarcinomas. Genes (Basel). 2021 Sep 11;12(9). doi: 10.3390/genes12091402. PMID: 34573384; PMCID: PMC8467269.
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Detection of .

Diagnostics (Basel, Switzerland)

Siggillino A, Ulivi P, Pasini L, Reda MS, Chiadini E, Tofanetti FR, Baglivo S, Metro G, Crinó L, Delmonte A, Minotti V, Roila F, Ludovini V.
PMID: 33297595
Diagnostics (Basel). 2020 Dec 07;10(12). doi: 10.3390/diagnostics10121062.

Analysis of circulating cell-free tumor DNA (cftDNA) has emerged as a specific and sensitive blood-based approach to detect epidermal growth factor receptor (

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Siggillino A, Ulivi P, Pasini L, et al. Detection of . Diagnostics (Basel). 2020;10(12)doi: 10.3390/diagnostics10121062.
Siggillino, A., Ulivi, P., Pasini, L., Reda, M. S., Chiadini, E., Tofanetti, F. R., Baglivo, S., Metro, G., Crinó, L., Delmonte, A., Minotti, V., Roila, F., & Ludovini, V. (2020). Detection of . Diagnostics (Basel, Switzerland), 10(12), . https://doi.org/10.3390/diagnostics10121062
Siggillino, Annamaria, et al. "Detection of ." Diagnostics (Basel, Switzerland) vol. 10,12 (2020). doi: https://doi.org/10.3390/diagnostics10121062
Siggillino A, Ulivi P, Pasini L, Reda MS, Chiadini E, Tofanetti FR, Baglivo S, Metro G, Crinó L, Delmonte A, Minotti V, Roila F, Ludovini V. Detection of . Diagnostics (Basel). 2020 Dec 07;10(12). doi: 10.3390/diagnostics10121062. PMID: 33297595; PMCID: PMC7762356.
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Endothelial dysfunction in cardiovascular disease and Flammer syndrome-similarities and differences.

The EPMA journal

Barthelmes J, Nägele MP, Ludovici V, Ruschitzka F, Sudano I, Flammer AJ.
PMID: 28824736
EPMA J. 2017 Jun 06;8(2):99-109. doi: 10.1007/s13167-017-0099-1. eCollection 2017 Jun.

The endothelium has increasingly been recognized as a smart barrier and a key regulator of blood flow in micro- and macrovascular beds. Endothelial dysfunction marks a stage of atherosclerosis and is an important prognostic marker for cardiovascular disease. Yet,...

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Barthelmes J, Nägele MP, Ludovici V, et al. Endothelial dysfunction in cardiovascular disease and Flammer syndrome-similarities and differences. EPMA J. 2017;8(2):99-109doi: 10.1007/s13167-017-0099-1.
Barthelmes, J., Nägele, M. P., Ludovici, V., Ruschitzka, F., Sudano, I., & Flammer, A. J. (2017). Endothelial dysfunction in cardiovascular disease and Flammer syndrome-similarities and differences. The EPMA journal, 8(2), 99-109. https://doi.org/10.1007/s13167-017-0099-1
Barthelmes, Jens, et al. "Endothelial dysfunction in cardiovascular disease and Flammer syndrome-similarities and differences." The EPMA journal vol. 8,2 (2017): 99-109. doi: https://doi.org/10.1007/s13167-017-0099-1
Barthelmes J, Nägele MP, Ludovici V, Ruschitzka F, Sudano I, Flammer AJ. Endothelial dysfunction in cardiovascular disease and Flammer syndrome-similarities and differences. EPMA J. 2017 Jun 06;8(2):99-109. doi: 10.1007/s13167-017-0099-1. eCollection 2017 Jun. PMID: 28824736; PMCID: PMC5545991.
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