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Showing 1 to 12 of 69 entries
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Corrigendum: An automated approach to prepare tissue-derived spatially barcoded RNA-sequencing libraries.

Scientific reports

Jemt A, Salmén F, Lundmark A, Mollbrink A, Navarro JF, Ståhl PL, Yucel-Lindberg T, Lundeberg J.
PMID: 28287089
Sci Rep. 2017 Mar 13;7:41109. doi: 10.1038/srep41109.

No abstract available.

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Jemt A, Salmén F, Lundmark A, et al. Corrigendum: An automated approach to prepare tissue-derived spatially barcoded RNA-sequencing libraries. Sci Rep. 2017;7:41109doi: 10.1038/srep41109.
Jemt, A., Salmén, F., Lundmark, A., Mollbrink, A., Navarro, J. F., Ståhl, P. L., Yucel-Lindberg, T., & Lundeberg, J. (2017). Corrigendum: An automated approach to prepare tissue-derived spatially barcoded RNA-sequencing libraries. Scientific reports, 741109. https://doi.org/10.1038/srep41109
Jemt, Anders, et al. "Corrigendum: An automated approach to prepare tissue-derived spatially barcoded RNA-sequencing libraries." Scientific reports vol. 7 (2017): 41109. doi: https://doi.org/10.1038/srep41109
Jemt A, Salmén F, Lundmark A, Mollbrink A, Navarro JF, Ståhl PL, Yucel-Lindberg T, Lundeberg J. Corrigendum: An automated approach to prepare tissue-derived spatially barcoded RNA-sequencing libraries. Sci Rep. 2017 Mar 13;7:41109. doi: 10.1038/srep41109. PMID: 28287089; PMCID: PMC5347085.
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Axonal outgrowth in muscle grafts made acellular by chemical extraction.

Restorative neurology and neuroscience

Arai T, Kanje M, Lundborg G, Sondell M, Liu XL, Dahlin LB.
PMID: 11490088
Restor Neurol Neurosci. 2000;17(4):165-174.

Purpose: To compare nerve regeneration in autologous detergent extracted and freeze-thawed muscle grafts and to electrophoretically characterize the grafts. Methods: Autologous acellular muscie grafts were created either by freeze/thawing or by detergent extraction and then used to bridge a...

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Arai T, Kanje M, Lundborg G, et al. Axonal outgrowth in muscle grafts made acellular by chemical extraction. Restor Neurol Neurosci. 2000;17(4):165-174
Arai, T., Kanje, M., Lundborg, G., Sondell, M., Liu, X. L., & Dahlin, L. B. (2000). Axonal outgrowth in muscle grafts made acellular by chemical extraction. Restorative neurology and neuroscience, 17(4), 165-174.
Arai, Takeru, et al. "Axonal outgrowth in muscle grafts made acellular by chemical extraction." Restorative neurology and neuroscience vol. 17,4 (2000): 165-174.
Arai T, Kanje M, Lundborg G, Sondell M, Liu XL, Dahlin LB. Axonal outgrowth in muscle grafts made acellular by chemical extraction. Restor Neurol Neurosci. 2000;17(4):165-174. PMID: 11490088.
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Antibiotic-resistant Propionibacterium acnes on the skin of patients with moderate to severe acne in Stockholm.

Anaerobe

Oprica C, Emtestam L, Lapins J, Borglund E, Nyberg F, Stenlund K, Lundeberg L, Sillerström E, Nord CE.
PMID: 16701513
Anaerobe. 2004 Jun;10(3):155-64. doi: 10.1016/j.anaerobe.2004.02.002.

The objective was to study the prevalence and antibiotic susceptibility patterns of Propionibacterium acnes strains isolated from patients with moderate to severe acne in Stockholm, Sweden and to determine the diversity of pulsed-field gel electrophoresis types among resistant P....

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Oprica C, Emtestam L, Lapins J, et al. Antibiotic-resistant Propionibacterium acnes on the skin of patients with moderate to severe acne in Stockholm. Anaerobe. 2004;10(3):155-64doi: 10.1016/j.anaerobe.2004.02.002.
Oprica, C., Emtestam, L., Lapins, J., Borglund, E., Nyberg, F., Stenlund, K., Lundeberg, L., Sillerström, E., & Nord, C. E. (2004). Antibiotic-resistant Propionibacterium acnes on the skin of patients with moderate to severe acne in Stockholm. Anaerobe, 10(3), 155-64. https://doi.org/10.1016/j.anaerobe.2004.02.002
Oprica, Cristina, et al. "Antibiotic-resistant Propionibacterium acnes on the skin of patients with moderate to severe acne in Stockholm." Anaerobe vol. 10,3 (2004): 155-64. doi: https://doi.org/10.1016/j.anaerobe.2004.02.002
Oprica C, Emtestam L, Lapins J, Borglund E, Nyberg F, Stenlund K, Lundeberg L, Sillerström E, Nord CE. Antibiotic-resistant Propionibacterium acnes on the skin of patients with moderate to severe acne in Stockholm. Anaerobe. 2004 Jun;10(3):155-64. doi: 10.1016/j.anaerobe.2004.02.002. PMID: 16701513.
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Nerve regeneration in nerve grafts conditioned by vibration exposure.

Restorative neurology and neuroscience

Bergman S, Widerberg A, Danielsen N, Lundborg G, Dahlin LB.
PMID: 21551785
Restor Neurol Neurosci. 1995 Jan 01;7(3):165-9. doi: 10.3233/RNN-1994-7306.

Regeneration distances were studied in nerves from vibration-exposed limbs. One hind limb of anaesthetized rats was attached to a vibration exciter and exposed to vibration (80 Hz/32 m/s2) for 5 h/day for 2 or 5 days. Seven days after...

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Bergman S, Widerberg A, Danielsen N, et al. Nerve regeneration in nerve grafts conditioned by vibration exposure. Restor Neurol Neurosci. 1995;7(3):165-9doi: 10.3233/RNN-1994-7306.
Bergman, S., Widerberg, A., Danielsen, N., Lundborg, G., & Dahlin, L. B. (1995). Nerve regeneration in nerve grafts conditioned by vibration exposure. Restorative neurology and neuroscience, 7(3), 165-9. https://doi.org/10.3233/RNN-1994-7306
Bergman, S, et al. "Nerve regeneration in nerve grafts conditioned by vibration exposure." Restorative neurology and neuroscience vol. 7,3 (1995): 165-9. doi: https://doi.org/10.3233/RNN-1994-7306
Bergman S, Widerberg A, Danielsen N, Lundborg G, Dahlin LB. Nerve regeneration in nerve grafts conditioned by vibration exposure. Restor Neurol Neurosci. 1995 Jan 01;7(3):165-9. doi: 10.3233/RNN-1994-7306. PMID: 21551785.
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The effect of dominance on food hoarding: a game theoretical model.

The American naturalist

Brodin A, Lundborg K, Clark CW.
PMID: 18707236
Am Nat. 2001 Jan;157(1):66-75. doi: 10.1086/317008.

Many food hoarding animals live in small groups structured by rank. The presence of conspecifics in the hoarding area increases the risk of losing stored supplies. The possibility of stealing from others depends on a forager's rank in the...

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Brodin A, Lundborg K, Clark CW. The effect of dominance on food hoarding: a game theoretical model. Am Nat. 2001;157(1):66-75doi: 10.1086/317008.
Brodin, A., Lundborg, K., & Clark, C. W. (2001). The effect of dominance on food hoarding: a game theoretical model. The American naturalist, 157(1), 66-75. https://doi.org/10.1086/317008
Brodin, A, et al. "The effect of dominance on food hoarding: a game theoretical model." The American naturalist vol. 157,1 (2001): 66-75. doi: https://doi.org/10.1086/317008
Brodin A, Lundborg K, Clark CW. The effect of dominance on food hoarding: a game theoretical model. Am Nat. 2001 Jan;157(1):66-75. doi: 10.1086/317008. PMID: 18707236.
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Improving hand sensibility in vibration induced neuropathy: A case-series.

Journal of occupational medicine and toxicology (London, England)

Rosén B, Björkman A, Lundborg G.
PMID: 21524297
J Occup Med Toxicol. 2011 Apr 27;6(1):13. doi: 10.1186/1745-6673-6-13.

OBJECTIVES: We report a long-term series of nine workers suffering from vibration-induced neuropathy, after many years of exposure to hand-held vibrating tools at high or low frequency. They were treated with temporary selective cutaneous anaesthesia (EMLA® cream) of the...

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Rosén B, Björkman A, Lundborg G. Improving hand sensibility in vibration induced neuropathy: A case-series. J Occup Med Toxicol. 2011;6(1):13doi: 10.1186/1745-6673-6-13.
Rosén, B., Björkman, A., & Lundborg, G. (2011). Improving hand sensibility in vibration induced neuropathy: A case-series. Journal of occupational medicine and toxicology (London, England), 6(1), 13. https://doi.org/10.1186/1745-6673-6-13
Rosén, Birgitta, et al. "Improving hand sensibility in vibration induced neuropathy: A case-series." Journal of occupational medicine and toxicology (London, England) vol. 6,1 (2011): 13. doi: https://doi.org/10.1186/1745-6673-6-13
Rosén B, Björkman A, Lundborg G. Improving hand sensibility in vibration induced neuropathy: A case-series. J Occup Med Toxicol. 2011 Apr 27;6(1):13. doi: 10.1186/1745-6673-6-13. PMID: 21524297; PMCID: PMC3104948.
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Comprehensive analysis of the genome transcriptome and proteome landscapes of three tumor cell lines.

Genome medicine

Akan P, Alexeyenko A, Costea PI, Hedberg L, Solnestam BW, Lundin S, Hällman J, Lundberg E, Uhlén M, Lundeberg J.
PMID: 23158748
Genome Med. 2012 Nov 18;4(11):86. doi: 10.1186/gm387. eCollection 2012.

We here present a comparative genome, transcriptome and functional network analysis of three human cancer cell lines (A431, U251MG and U2OS), and investigate their relation to protein expression. Gene copy numbers significantly influenced corresponding transcript levels; their effect on...

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Akan P, Alexeyenko A, Costea PI, et al. Comprehensive analysis of the genome transcriptome and proteome landscapes of three tumor cell lines. Genome Med. 2012;4(11):86doi: 10.1186/gm387.
Akan, P., Alexeyenko, A., Costea, P. I., Hedberg, L., Solnestam, B. W., Lundin, S., Hällman, J., Lundberg, E., Uhlén, M., & Lundeberg, J. (2012). Comprehensive analysis of the genome transcriptome and proteome landscapes of three tumor cell lines. Genome medicine, 4(11), 86. https://doi.org/10.1186/gm387
Akan, Pelin, et al. "Comprehensive analysis of the genome transcriptome and proteome landscapes of three tumor cell lines." Genome medicine vol. 4,11 (2012): 86. doi: https://doi.org/10.1186/gm387
Akan P, Alexeyenko A, Costea PI, Hedberg L, Solnestam BW, Lundin S, Hällman J, Lundberg E, Uhlén M, Lundeberg J. Comprehensive analysis of the genome transcriptome and proteome landscapes of three tumor cell lines. Genome Med. 2012 Nov 18;4(11):86. doi: 10.1186/gm387. eCollection 2012. PMID: 23158748; PMCID: PMC3580420.
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ST viewer: a tool for analysis and visualization of spatial transcriptomics datasets.

Bioinformatics (Oxford, England)

Fernández Navarro J, Lundeberg J, Ståhl PL.
PMID: 30875427
Bioinformatics. 2019 Mar 15;35(6):1058-1060. doi: 10.1093/bioinformatics/bty714.

MOTIVATION: Spatial Transcriptomics (ST) is a technique that combines high-resolution imaging with spatially resolved transcriptome-wide sequencing. This novel type of data opens up many possibilities for analysis and visualization, most of which are either not available with standard tools...

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Fernández Navarro J, Lundeberg J, Ståhl PL. ST viewer: a tool for analysis and visualization of spatial transcriptomics datasets. Bioinformatics. 2019;35(6):1058-1060doi: 10.1093/bioinformatics/bty714.
Fernández Navarro, J., Lundeberg, J., & Ståhl, P. L. (2019). ST viewer: a tool for analysis and visualization of spatial transcriptomics datasets. Bioinformatics (Oxford, England), 35(6), 1058-1060. https://doi.org/10.1093/bioinformatics/bty714
Fernández Navarro, José, et al. "ST viewer: a tool for analysis and visualization of spatial transcriptomics datasets." Bioinformatics (Oxford, England) vol. 35,6 (2019): 1058-1060. doi: https://doi.org/10.1093/bioinformatics/bty714
Fernández Navarro J, Lundeberg J, Ståhl PL. ST viewer: a tool for analysis and visualization of spatial transcriptomics datasets. Bioinformatics. 2019 Mar 15;35(6):1058-1060. doi: 10.1093/bioinformatics/bty714. PMID: 30875427.
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Government Assistance Protects Low-Income Families from Eviction.

Journal of policy analysis and management : [the journal of the Association for Public Policy Analysis and Management]

Lundberg I, Gold SL, Donnelly L, Brooks-Gunn J, McLanahan SS.
PMID: 33814669
J Policy Anal Manage. 2021;40(1):107-127. doi: 10.1002/pam.22234. Epub 2020 Jun 17.

A lack of affordable housing is a pressing issue for many low-income American families and can lead to eviction from their homes. Housing assistance programs to address this problem include public housing and other assistance, including vouchers, through which...

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Lundberg I, Gold SL, Donnelly L, et al. Government Assistance Protects Low-Income Families from Eviction. J Policy Anal Manage. 2020;40(1):107-127doi: 10.1002/pam.22234.
Lundberg, I., Gold, S. L., Donnelly, L., Brooks-Gunn, J., & McLanahan, S. S. (2021). Government Assistance Protects Low-Income Families from Eviction. Journal of policy analysis and management : [the journal of the Association for Public Policy Analysis and Management], 40(1), 107-127. https://doi.org/10.1002/pam.22234
Lundberg, Ian, et al. "Government Assistance Protects Low-Income Families from Eviction." Journal of policy analysis and management : [the journal of the Association for Public Policy Analysis and Management] vol. 40,1 (2021): 107-127. doi: https://doi.org/10.1002/pam.22234
Lundberg I, Gold SL, Donnelly L, Brooks-Gunn J, McLanahan SS. Government Assistance Protects Low-Income Families from Eviction. J Policy Anal Manage. 2021;40(1):107-127. doi: 10.1002/pam.22234. Epub 2020 Jun 17. PMID: 33814669; PMCID: PMC8011571.
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Association between first and second stage of labour duration and mode of delivery: A population-based cohort study.

Paediatric and perinatal epidemiology

Lundborg L, Åberg K, Sandström A, Liu X, Tilden E, Stephansson O, Ahlberg M.
PMID: 34964511
Paediatr Perinat Epidemiol. 2021 Dec 29; doi: 10.1111/ppe.12848. Epub 2021 Dec 29.

BACKGROUND: Active first stage of labour duration can widely vary between women. However, the nature of the relationship between the active first stage and second stage of labour duration is sparsely studied.OBJECTIVES: To determine whether active first stage of...

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Lundborg L, Åberg K, Sandström A, et al. Association between first and second stage of labour duration and mode of delivery: A population-based cohort study. Paediatr Perinat Epidemiol. 2021;doi: 10.1111/ppe.12848.
Lundborg, L., Åberg, K., Sandström, A., Liu, X., Tilden, E., Stephansson, O., & Ahlberg, M. (2021). Association between first and second stage of labour duration and mode of delivery: A population-based cohort study. Paediatric and perinatal epidemiology, . https://doi.org/10.1111/ppe.12848
Lundborg, Louise, et al. "Association between first and second stage of labour duration and mode of delivery: A population-based cohort study." Paediatric and perinatal epidemiology vol. (2021). doi: https://doi.org/10.1111/ppe.12848
Lundborg L, Åberg K, Sandström A, Liu X, Tilden E, Stephansson O, Ahlberg M. Association between first and second stage of labour duration and mode of delivery: A population-based cohort study. Paediatr Perinat Epidemiol. 2021 Dec 29; doi: 10.1111/ppe.12848. Epub 2021 Dec 29. PMID: 34964511.
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Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in the mouse liver.

Nature communications

Hildebrandt F, Andersson A, Saarenpää S, Larsson L, Van Hul N, Kanatani S, Masek J, Ellis E, Barragan A, Mollbrink A, Andersson ER, Lundeberg J, Ankarklev J.
PMID: 34857782
Nat Commun. 2021 Dec 02;12(1):7046. doi: 10.1038/s41467-021-27354-w.

Reconstruction of heterogeneity through single cell transcriptional profiling has greatly advanced our understanding of the spatial liver transcriptome in recent years. However, global transcriptional differences across lobular units remain elusive in physical space. Here, we apply Spatial Transcriptomics to...

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Hildebrandt F, Andersson A, Saarenpää S, et al. Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in the mouse liver. Nat Commun. 2021;12(1):7046doi: 10.1038/s41467-021-27354-w.
Hildebrandt, F., Andersson, A., Saarenpää, S., Larsson, L., Van Hul, N., Kanatani, S., Masek, J., Ellis, E., Barragan, A., Mollbrink, A., Andersson, E. R., Lundeberg, J., & Ankarklev, J. (2021). Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in the mouse liver. Nature communications, 12(1), 7046. https://doi.org/10.1038/s41467-021-27354-w
Hildebrandt, Franziska, et al. "Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in the mouse liver." Nature communications vol. 12,1 (2021): 7046. doi: https://doi.org/10.1038/s41467-021-27354-w
Hildebrandt F, Andersson A, Saarenpää S, Larsson L, Van Hul N, Kanatani S, Masek J, Ellis E, Barragan A, Mollbrink A, Andersson ER, Lundeberg J, Ankarklev J. Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in the mouse liver. Nat Commun. 2021 Dec 02;12(1):7046. doi: 10.1038/s41467-021-27354-w. PMID: 34857782; PMCID: PMC8640072.
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Morphological Features Extracted by AI Associated with Spatial Transcriptomics in Prostate Cancer.

Cancers

Chelebian E, Avenel C, Kartasalo K, Marklund M, Tanoglidi A, Mirtti T, Colling R, Erickson A, Lamb AD, Lundeberg J, Wählby C.
PMID: 34638322
Cancers (Basel). 2021 Sep 28;13(19). doi: 10.3390/cancers13194837.

Prostate cancer is a common cancer type in men, yet some of its traits are still under-explored. One reason for this is high molecular and morphological heterogeneity. The purpose of this study was to develop a method to gain...

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Chelebian E, Avenel C, Kartasalo K, et al. Morphological Features Extracted by AI Associated with Spatial Transcriptomics in Prostate Cancer. Cancers (Basel). 2021;13(19)doi: 10.3390/cancers13194837.
Chelebian, E., Avenel, C., Kartasalo, K., Marklund, M., Tanoglidi, A., Mirtti, T., Colling, R., Erickson, A., Lamb, A. D., Lundeberg, J., & Wählby, C. (2021). Morphological Features Extracted by AI Associated with Spatial Transcriptomics in Prostate Cancer. Cancers, 13(19), . https://doi.org/10.3390/cancers13194837
Chelebian, Eduard, et al. "Morphological Features Extracted by AI Associated with Spatial Transcriptomics in Prostate Cancer." Cancers vol. 13,19 (2021). doi: https://doi.org/10.3390/cancers13194837
Chelebian E, Avenel C, Kartasalo K, Marklund M, Tanoglidi A, Mirtti T, Colling R, Erickson A, Lamb AD, Lundeberg J, Wählby C. Morphological Features Extracted by AI Associated with Spatial Transcriptomics in Prostate Cancer. Cancers (Basel). 2021 Sep 28;13(19). doi: 10.3390/cancers13194837. PMID: 34638322; PMCID: PMC8507756.
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Showing 1 to 12 of 69 entries