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Complete genome sequence of Oceanithermus profundus type strain (506).

Standards in genomic sciences

Pati A, Zhang X, Lapidus A, Nolan M, Lucas S, Del Rio TG, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Chen A, Palaniappan K, Hauser L, Jeffries CD, Brambilla EM, Röhl A, Mwirichia R, Rohde M, Tindall BJ, Sikorski J, Wirth R, Göker M, Woyke T, Detter JC, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Land M.
PMID: 21677858
Stand Genomic Sci. 2011 Apr 29;4(2):210-20. doi: 10.4056/sigs.1734292.

Oceanithermus profundus Miroshnichenko et al. 2003 is the type species of the genus Oceanithermus, which belongs to the family Thermaceae. The genus currently comprises two species whose members are thermophilic and are able to reduce sulfur compounds and nitrite....

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Pati A, Zhang X, Lapidus A, et al. Complete genome sequence of Oceanithermus profundus type strain (506). Stand Genomic Sci. 2011;4(2):210-20doi: 10.4056/sigs.1734292.
Pati, A., Zhang, X., Lapidus, A., Nolan, M., Lucas, S., Del Rio, T. G., Tice, H., Cheng, J. F., Tapia, R., Han, C., Goodwin, L., Pitluck, S., Liolios, K., Pagani, I., Ivanova, N., Mavromatis, K., Chen, A., Palaniappan, K., Hauser, L., Jeffries, C. D., Brambilla, E. M., Röhl, A., Mwirichia, R., Rohde, M., Tindall, B. J., Sikorski, J., Wirth, R., Göker, M., Woyke, T., Detter, J. C., Bristow, J., Eisen, J. A., Markowitz, V., Hugenholtz, P., Kyrpides, N. C., Klenk, H. P., & Land, M. (2011). Complete genome sequence of Oceanithermus profundus type strain (506). Standards in genomic sciences, 4(2), 210-20. https://doi.org/10.4056/sigs.1734292
Pati, Amrita, et al. "Complete genome sequence of Oceanithermus profundus type strain (506)." Standards in genomic sciences vol. 4,2 (2011): 210-20. doi: https://doi.org/10.4056/sigs.1734292
Pati A, Zhang X, Lapidus A, Nolan M, Lucas S, Del Rio TG, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Chen A, Palaniappan K, Hauser L, Jeffries CD, Brambilla EM, Röhl A, Mwirichia R, Rohde M, Tindall BJ, Sikorski J, Wirth R, Göker M, Woyke T, Detter JC, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Land M. Complete genome sequence of Oceanithermus profundus type strain (506). Stand Genomic Sci. 2011 Apr 29;4(2):210-20. doi: 10.4056/sigs.1734292. PMID: 21677858; PMCID: PMC3111992.
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Isolation of haloalkaliphilic fungi from Lake Magadi in Kenya.

Heliyon

Orwa P, Mugambi G, Wekesa V, Mwirichia R.
PMID: 31938738
Heliyon. 2020 Jan 09;6(1):e02823. doi: 10.1016/j.heliyon.2019.e02823. eCollection 2020 Jan.

In this study we explored the cultivable fungal diversity in Lake Magadi and their secondary metabolite production. Isolation was done on alkaline media (Potato dextrose agar, Malt extract agar, Oatmeal agar and Sabouraud dextrose agar). A total of 52...

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Orwa P, Mugambi G, Wekesa V, et al. Isolation of haloalkaliphilic fungi from Lake Magadi in Kenya. Heliyon. 2020;6(1):e02823doi: 10.1016/j.heliyon.2019.e02823.
Orwa, P., Mugambi, G., Wekesa, V., & Mwirichia, R. (2020). Isolation of haloalkaliphilic fungi from Lake Magadi in Kenya. Heliyon, 6(1), e02823. https://doi.org/10.1016/j.heliyon.2019.e02823
Orwa, Philemon, et al. "Isolation of haloalkaliphilic fungi from Lake Magadi in Kenya." Heliyon vol. 6,1 (2020): e02823. doi: https://doi.org/10.1016/j.heliyon.2019.e02823
Orwa P, Mugambi G, Wekesa V, Mwirichia R. Isolation of haloalkaliphilic fungi from Lake Magadi in Kenya. Heliyon. 2020 Jan 09;6(1):e02823. doi: 10.1016/j.heliyon.2019.e02823. eCollection 2020 Jan. PMID: 31938738; PMCID: PMC6953635.
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Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR).

Standards in genomic sciences

Han C, Mwirichia R, Chertkov O, Held B, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin L, Pitluck S, Huntemann M, Liolios K, Ivanova N, Pagani I, Mavromatis K, Ovchinikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Brambilla EM, Rohde M, Spring S, Sikorski J, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Detter JC.
PMID: 21886864
Stand Genomic Sci. 2011 Jul 01;4(3):371-80. doi: 10.4056/sigs.2004684.

Syntrophobotulus glycolicus Friedrich et al. 1996 is currently the only member of the genus Syntrophobotulus within the family Peptococcaceae. The species is of interest because of its isolated phylogenetic location in the genome-sequenced fraction of tree of life. When...

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Han C, Mwirichia R, Chertkov O, et al. Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR). Stand Genomic Sci. 2011;4(3):371-80doi: 10.4056/sigs.2004684.
Han, C., Mwirichia, R., Chertkov, O., Held, B., Lapidus, A., Nolan, M., Lucas, S., Hammon, N., Deshpande, S., Cheng, J. F., Tapia, R., Goodwin, L., Pitluck, S., Huntemann, M., Liolios, K., Ivanova, N., Pagani, I., Mavromatis, K., Ovchinikova, G., Pati, A., Chen, A., Palaniappan, K., Land, M., Hauser, L., Brambilla, E. M., Rohde, M., Spring, S., Sikorski, J., Göker, M., Woyke, T., Bristow, J., Eisen, J. A., Markowitz, V., Hugenholtz, P., Kyrpides, N. C., Klenk, H. P., & Detter, J. C. (2011). Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR). Standards in genomic sciences, 4(3), 371-80. https://doi.org/10.4056/sigs.2004684
Han, Cliff, et al. "Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR)." Standards in genomic sciences vol. 4,3 (2011): 371-80. doi: https://doi.org/10.4056/sigs.2004684
Han C, Mwirichia R, Chertkov O, Held B, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin L, Pitluck S, Huntemann M, Liolios K, Ivanova N, Pagani I, Mavromatis K, Ovchinikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Brambilla EM, Rohde M, Spring S, Sikorski J, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Detter JC. Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR). Stand Genomic Sci. 2011 Jul 01;4(3):371-80. doi: 10.4056/sigs.2004684. PMID: 21886864; PMCID: PMC3156405.
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454 Pyrosequencing-based assessment of bacterial diversity and community structure in termite guts, mounds and surrounding soils.

SpringerPlus

Makonde HM, Mwirichia R, Osiemo Z, Boga HI, Klenk HP.
PMID: 26355944
Springerplus. 2015 Sep 02;4:471. doi: 10.1186/s40064-015-1262-6. eCollection 2015.

Termites constitute part of diverse and economically important termite fauna in Africa, but information on gut microbiota and their associated soil microbiome is still inadequate. In this study, we assessed and compared the bacterial diversity and community structure between...

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Makonde HM, Mwirichia R, Osiemo Z, et al. 454 Pyrosequencing-based assessment of bacterial diversity and community structure in termite guts, mounds and surrounding soils. Springerplus. 2015;4:471doi: 10.1186/s40064-015-1262-6.
Makonde, H. M., Mwirichia, R., Osiemo, Z., Boga, H. I., & Klenk, H. P. (2015). 454 Pyrosequencing-based assessment of bacterial diversity and community structure in termite guts, mounds and surrounding soils. SpringerPlus, 4471. https://doi.org/10.1186/s40064-015-1262-6
Makonde, Huxley M, et al. "454 Pyrosequencing-based assessment of bacterial diversity and community structure in termite guts, mounds and surrounding soils." SpringerPlus vol. 4 (2015): 471. doi: https://doi.org/10.1186/s40064-015-1262-6
Makonde HM, Mwirichia R, Osiemo Z, Boga HI, Klenk HP. 454 Pyrosequencing-based assessment of bacterial diversity and community structure in termite guts, mounds and surrounding soils. Springerplus. 2015 Sep 02;4:471. doi: 10.1186/s40064-015-1262-6. eCollection 2015. PMID: 26355944; PMCID: PMC4556716.
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Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262).

Standards in genomic sciences

Woyke T, Chertkov O, Lapidus A, Nolan M, Lucas S, Del Rio TG, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, Huntemann M, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Brambilla EM, Rohde M, Mwirichia R, Sikorski J, Tindall BJ, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC.
PMID: 22180807
Stand Genomic Sci. 2011 Oct 15;5(1):21-9. doi: 10.4056/sigs.2124912. Epub 2011 Sep 23.

Fluviicola taffensis O'Sullivan et al. 2005 belongs to the monotypic genus Fluviicola within the family Cryomorphaceae. The species is of interest because of its isolated phylogenetic location in the genome-sequenced fraction of the tree of life. Strain RW262(T) forms...

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Woyke T, Chertkov O, Lapidus A, et al. Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262). Stand Genomic Sci. 2011;5(1):21-9doi: 10.4056/sigs.2124912.
Woyke, T., Chertkov, O., Lapidus, A., Nolan, M., Lucas, S., Del Rio, T. G., Tice, H., Cheng, J. F., Tapia, R., Han, C., Goodwin, L., Pitluck, S., Liolios, K., Pagani, I., Ivanova, N., Huntemann, M., Mavromatis, K., Mikhailova, N., Pati, A., Chen, A., Palaniappan, K., Land, M., Hauser, L., Brambilla, E. M., Rohde, M., Mwirichia, R., Sikorski, J., Tindall, B. J., Göker, M., Bristow, J., Eisen, J. A., Markowitz, V., Hugenholtz, P., Klenk, H. P., & Kyrpides, N. C. (2011). Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262). Standards in genomic sciences, 5(1), 21-9. https://doi.org/10.4056/sigs.2124912
Woyke, Tanja, et al. "Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262)." Standards in genomic sciences vol. 5,1 (2011): 21-9. doi: https://doi.org/10.4056/sigs.2124912
Woyke T, Chertkov O, Lapidus A, Nolan M, Lucas S, Del Rio TG, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, Huntemann M, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Brambilla EM, Rohde M, Mwirichia R, Sikorski J, Tindall BJ, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC. Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262). Stand Genomic Sci. 2011 Oct 15;5(1):21-9. doi: 10.4056/sigs.2124912. Epub 2011 Sep 23. PMID: 22180807; PMCID: PMC3236050.
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Study on the effect of .

Heliyon

Munyao OM, Thiong'o JK, Muthengia JW, Mutitu DK, Mwirichia R, Muriithi G, Marangu JM.
PMID: 31989055
Heliyon. 2020 Jan 16;6(1):e03232. doi: 10.1016/j.heliyon.2020.e03232. eCollection 2020 Jan.

Most of concrete structural failures are attributed to poor workmanship and poor engineering designs. Some microorganisms present in sewer systems can degrade the concrete and/or mortar. Concrete failures due to microbial attack has not attracted much attention especially in...

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Munyao OM, Thiong'o JK, Muthengia JW, et al. Study on the effect of . Heliyon. 2020;6(1):e03232doi: 10.1016/j.heliyon.2020.e03232.
Munyao, O. M., Thiong'o, J. K., Muthengia, J. W., Mutitu, D. K., Mwirichia, R., Muriithi, G., & Marangu, J. M. (2020). Study on the effect of . Heliyon, 6(1), e03232. https://doi.org/10.1016/j.heliyon.2020.e03232
Munyao, Onesmus Mulwa, et al. "Study on the effect of ." Heliyon vol. 6,1 (2020): e03232. doi: https://doi.org/10.1016/j.heliyon.2020.e03232
Munyao OM, Thiong'o JK, Muthengia JW, Mutitu DK, Mwirichia R, Muriithi G, Marangu JM. Study on the effect of . Heliyon. 2020 Jan 16;6(1):e03232. doi: 10.1016/j.heliyon.2020.e03232. eCollection 2020 Jan. PMID: 31989055; PMCID: PMC6970171.
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Complete genome sequence of the thermophilic sulfur-reducer Desulfurobacterium thermolithotrophum type strain (BSA(T)) from a deep-sea hydrothermal vent.

Standards in genomic sciences

Göker M, Daligault H, Mwirichia R, Lapidus A, Lucas S, Deshpande S, Pagani I, Tapia R, Cheng JF, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Han C, Land M, Hauser L, Pan C, Brambilla EM, Rohde M, Spring S, Sikorski J, Wirth R, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP.
PMID: 22675590
Stand Genomic Sci. 2011 Dec 31;5(3):407-15. doi: 10.4056/sigs.2465574. Epub 2011 Dec 30.

Desulfurobacterium thermolithotrophum L'Haridon et al. 1998 is the type species of the genus Desulfurobacterium which belongs to the family Desulfurobacteriaceae. The species is of interest because it represents the first thermophilic bacterium that can act as a primary producer...

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Göker M, Daligault H, Mwirichia R, et al. Complete genome sequence of the thermophilic sulfur-reducer Desulfurobacterium thermolithotrophum type strain (BSA(T)) from a deep-sea hydrothermal vent. Stand Genomic Sci. 2011;5(3):407-15doi: 10.4056/sigs.2465574.
Göker, M., Daligault, H., Mwirichia, R., Lapidus, A., Lucas, S., Deshpande, S., Pagani, I., Tapia, R., Cheng, J. F., Goodwin, L., Pitluck, S., Liolios, K., Ivanova, N., Mavromatis, K., Mikhailova, N., Pati, A., Chen, A., Palaniappan, K., Han, C., Land, M., Hauser, L., Pan, C., Brambilla, E. M., Rohde, M., Spring, S., Sikorski, J., Wirth, R., Detter, J. C., Woyke, T., Bristow, J., Eisen, J. A., Markowitz, V., Hugenholtz, P., Kyrpides, N. C., & Klenk, H. P. (2011). Complete genome sequence of the thermophilic sulfur-reducer Desulfurobacterium thermolithotrophum type strain (BSA(T)) from a deep-sea hydrothermal vent. Standards in genomic sciences, 5(3), 407-15. https://doi.org/10.4056/sigs.2465574
Göker, Markus, et al. "Complete genome sequence of the thermophilic sulfur-reducer Desulfurobacterium thermolithotrophum type strain (BSA(T)) from a deep-sea hydrothermal vent." Standards in genomic sciences vol. 5,3 (2011): 407-15. doi: https://doi.org/10.4056/sigs.2465574
Göker M, Daligault H, Mwirichia R, Lapidus A, Lucas S, Deshpande S, Pagani I, Tapia R, Cheng JF, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Han C, Land M, Hauser L, Pan C, Brambilla EM, Rohde M, Spring S, Sikorski J, Wirth R, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Complete genome sequence of the thermophilic sulfur-reducer Desulfurobacterium thermolithotrophum type strain (BSA(T)) from a deep-sea hydrothermal vent. Stand Genomic Sci. 2011 Dec 31;5(3):407-15. doi: 10.4056/sigs.2465574. Epub 2011 Dec 30. PMID: 22675590; PMCID: PMC3368423.
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Influence of .

Heliyon

Mutitu DK, Wachira JM, Mwirichia R, Thiong'o JK, Munyao OM, Muriithi G.
PMID: 31844753
Heliyon. 2019 Nov 20;5(11):e02881. doi: 10.1016/j.heliyon.2019.e02881. eCollection 2019 Nov.

Cement structures are subject to degradation either by aggressive media or development of micro/macro cracks which create external substance ingress pathways. Microbiocementation can be employed as a self-intelligent solution to this deterioration process. This paper presents study results on...

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Mutitu DK, Wachira JM, Mwirichia R, et al. Influence of . Heliyon. 2019;5(11):e02881doi: 10.1016/j.heliyon.2019.e02881.
Mutitu, D. K., Wachira, J. M., Mwirichia, R., Thiong'o, J. K., Munyao, O. M., & Muriithi, G. (2019). Influence of . Heliyon, 5(11), e02881. https://doi.org/10.1016/j.heliyon.2019.e02881
Mutitu, Daniel Karanja, et al. "Influence of ." Heliyon vol. 5,11 (2019): e02881. doi: https://doi.org/10.1016/j.heliyon.2019.e02881
Mutitu DK, Wachira JM, Mwirichia R, Thiong'o JK, Munyao OM, Muriithi G. Influence of . Heliyon. 2019 Nov 20;5(11):e02881. doi: 10.1016/j.heliyon.2019.e02881. eCollection 2019 Nov. PMID: 31844753; PMCID: PMC6895596.
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305(T)), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended descriptions of the order Planctomycetales and the family Planctomycetaceae.

Standards in genomic sciences

Scheuner C, Tindall BJ, Lu M, Nolan M, Lapidus A, Cheng JF, Goodwin L, Pitluck S, Huntemann M, Liolios K, Pagani I, Mavromatis K, Ivanova N, Pati A, Chen A, Palaniappan K, Jeffries CD, Hauser L, Land M, Mwirichia R, Rohde M, Abt B, Detter JC, Woyke T, Eisen JA, Markowitz V, Hugenholtz P, Göker M, Kyrpides NC, Klenk HP.
PMID: 25780503
Stand Genomic Sci. 2014 Dec 08;9:10. doi: 10.1186/1944-3277-9-10. eCollection 2014.

Planctomyces brasiliensis Schlesner 1990 belongs to the order Planctomycetales, which differs from other bacterial taxa by several distinctive features such as internal cell compartmentalization, multiplication by forming buds directly from the spherical, ovoid or pear-shaped mother cell and a...

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Scheuner C, Tindall BJ, Lu M, et al. Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305(T)), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended descriptions of the order Planctomycetales and the family Planctomycetaceae. Stand Genomic Sci. 2014;9:10doi: 10.1186/1944-3277-9-10.
Scheuner, C., Tindall, B. J., Lu, M., Nolan, M., Lapidus, A., Cheng, J. F., Goodwin, L., Pitluck, S., Huntemann, M., Liolios, K., Pagani, I., Mavromatis, K., Ivanova, N., Pati, A., Chen, A., Palaniappan, K., Jeffries, C. D., Hauser, L., Land, M., Mwirichia, R., Rohde, M., Abt, B., Detter, J. C., Woyke, T., Eisen, J. A., Markowitz, V., Hugenholtz, P., Göker, M., Kyrpides, N. C., & Klenk, H. P. (2014). Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305(T)), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended descriptions of the order Planctomycetales and the family Planctomycetaceae. Standards in genomic sciences, 910. https://doi.org/10.1186/1944-3277-9-10
Scheuner, Carmen, et al. "Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305(T)), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended descriptions of the order Planctomycetales and the family Planctomycetaceae." Standards in genomic sciences vol. 9 (2014): 10. doi: https://doi.org/10.1186/1944-3277-9-10
Scheuner C, Tindall BJ, Lu M, Nolan M, Lapidus A, Cheng JF, Goodwin L, Pitluck S, Huntemann M, Liolios K, Pagani I, Mavromatis K, Ivanova N, Pati A, Chen A, Palaniappan K, Jeffries CD, Hauser L, Land M, Mwirichia R, Rohde M, Abt B, Detter JC, Woyke T, Eisen JA, Markowitz V, Hugenholtz P, Göker M, Kyrpides NC, Klenk HP. Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305(T)), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended descriptions of the order Planctomycetales and the family Planctomycetaceae. Stand Genomic Sci. 2014 Dec 08;9:10. doi: 10.1186/1944-3277-9-10. eCollection 2014. PMID: 25780503; PMCID: PMC4334474.
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