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Pati A, Zhang X, Lapidus A, et al. Complete genome sequence of Oceanithermus profundus type strain (506). Stand Genomic Sci. 2011;4(2):210-20doi: 10.4056/sigs.1734292.
Pati, A., Zhang, X., Lapidus, A., Nolan, M., Lucas, S., Del Rio, T. G., Tice, H., Cheng, J. F., Tapia, R., Han, C., Goodwin, L., Pitluck, S., Liolios, K., Pagani, I., Ivanova, N., Mavromatis, K., Chen, A., Palaniappan, K., Hauser, L., Jeffries, C. D., Brambilla, E. M., Röhl, A., Mwirichia, R., Rohde, M., Tindall, B. J., Sikorski, J., Wirth, R., Göker, M., Woyke, T., Detter, J. C., Bristow, J., Eisen, J. A., Markowitz, V., Hugenholtz, P., Kyrpides, N. C., Klenk, H. P., & Land, M. (2011). Complete genome sequence of Oceanithermus profundus type strain (506). Standards in genomic sciences, 4(2), 210-20. https://doi.org/10.4056/sigs.1734292
Pati, Amrita, et al. "Complete genome sequence of Oceanithermus profundus type strain (506)." Standards in genomic sciences vol. 4,2 (2011): 210-20. doi: https://doi.org/10.4056/sigs.1734292
Pati A, Zhang X, Lapidus A, Nolan M, Lucas S, Del Rio TG, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Chen A, Palaniappan K, Hauser L, Jeffries CD, Brambilla EM, Röhl A, Mwirichia R, Rohde M, Tindall BJ, Sikorski J, Wirth R, Göker M, Woyke T, Detter JC, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Land M. Complete genome sequence of Oceanithermus profundus type strain (506). Stand Genomic Sci. 2011 Apr 29;4(2):210-20. doi: 10.4056/sigs.1734292. PMID: 21677858; PMCID: PMC3111992.
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Stand Genomic Sci. 2011 Apr 29;4(2):210-20. doi: 10.4056/sigs.1734292.

Complete genome sequence of Oceanithermus profundus type strain (506).

Standards in genomic sciences

Amrita Pati, Xiaojing Zhang, Alla Lapidus, Matt Nolan, Susan Lucas, Tijana Glavina Del Rio, Hope Tice, Jan-Fang Cheng, Roxane Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Konstantinos Mavromatis, Amy Chen, Krishna Palaniappan, Loren Hauser, Cynthia D Jeffries, Evelyne-Marie Brambilla, Alina Röhl, Romano Mwirichia, Manfred Rohde, Brian J Tindall, Johannes Sikorski, Reinhard Wirth, Markus Göker, Tanja Woyke, John C Detter, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C Kyrpides, Hans-Peter Klenk, Miriam Land

PMID: 21677858 PMCID: PMC3111992 DOI: 10.4056/sigs.1734292

Abstract

Oceanithermus profundus Miroshnichenko et al. 2003 is the type species of the genus Oceanithermus, which belongs to the family Thermaceae. The genus currently comprises two species whose members are thermophilic and are able to reduce sulfur compounds and nitrite. The organism is adapted to the salinity of sea water, is able to utilize a broad range of carbohydrates, some proteinaceous substrates, organic acids and alcohols. This is the first completed genome sequence of a member of the genus Oceanithermus and the fourth sequence from the family Thermaceae. The 2,439,291 bp long genome with its 2,391 protein-coding and 54 RNA genes consists of one chromosome and a 135,351 bp long plasmid, and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Keywords: GEBA; Gram-negative; Thermaceae; chemolithoheterotrophic; hydrothermal vent; microaerophilic; moderate thermophilic; neutrophilic; nitrate-reducing; non-motile

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