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The future of coral reefs: a microbial perspective

EPSCoR Research Infrastructure Improvement Program: Bridging EPSCoR Communities AND Program Evaluation

Ainsworth TD, Gates RD, Thurber RV.
GSID: 1T2hKhaA4FoJ
TD Ainsworth, RV Thurber, RD Gates - Trends in ecology & evolution, 2010 - Elsevier

Microbial communities respond and quickly adapt to disturbance and have central roles in ecosystem function. Yet, the many roles of coral-associated microbial communities are not currently accounted for in predicting future responses of reef ecosystems. Here, we propose that...

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Ainsworth, T. D., Thurber, R. V., & Gates, R. D. (2010). The future of coral reefs: a microbial perspective. Trends in ecology & evolution, 25(4), 233-240.
Ainsworth, Tracy D., Rebecca Vega Thurber, and Ruth D. Gates. "The future of coral reefs: a microbial perspective." Trends in ecology & evolution 25.4 (2010): 233-240.
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Integrating structure-from-motion photogrammetry with geospatial software as a novel technique for quantifying 3D ecological characteristics of coral reefs.

PeerJ

Burns J, Delparte D, Gates RD, Takabayashi M.
PMID: 26207190
PeerJ. 2015 Jul 07;3:e1077. doi: 10.7717/peerj.1077. eCollection 2015.

The structural complexity of coral reefs plays a major role in the biodiversity, productivity, and overall functionality of reef ecosystems. Conventional metrics with 2-dimensional properties are inadequate for characterization of reef structural complexity. A 3-dimensional (3D) approach can better...

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Burns J, Delparte D, Gates RD, et al. Integrating structure-from-motion photogrammetry with geospatial software as a novel technique for quantifying 3D ecological characteristics of coral reefs. PeerJ. 2015;3:e1077doi: 10.7717/peerj.1077.
Burns, J., Delparte, D., Gates, R. D., & Takabayashi, M. (2015). Integrating structure-from-motion photogrammetry with geospatial software as a novel technique for quantifying 3D ecological characteristics of coral reefs. PeerJ, 3e1077. https://doi.org/10.7717/peerj.1077
Burns, Jhr, et al. "Integrating structure-from-motion photogrammetry with geospatial software as a novel technique for quantifying 3D ecological characteristics of coral reefs." PeerJ vol. 3 (2015): e1077. doi: https://doi.org/10.7717/peerj.1077
Burns J, Delparte D, Gates RD, Takabayashi M. Integrating structure-from-motion photogrammetry with geospatial software as a novel technique for quantifying 3D ecological characteristics of coral reefs. PeerJ. 2015 Jul 07;3:e1077. doi: 10.7717/peerj.1077. eCollection 2015. PMID: 26207190; PMCID: PMC4511817.
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Divergent evolutionary histories of DNA markers in a Hawaiian population of the coral .

PeerJ

Putnam HM, Adams DK, Zelzion E, Wagner NE, Qiu H, Mass T, Falkowski PG, Gates RD, Bhattacharya D.
PMID: 28533967
PeerJ. 2017 May 18;5:e3319. doi: 10.7717/peerj.3319. eCollection 2017.

We investigated intra- and inter-colony sequence variation in a population of the dominant Hawaiian coral

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Putnam HM, Adams DK, Zelzion E, et al. Divergent evolutionary histories of DNA markers in a Hawaiian population of the coral . PeerJ. 2017;5:e3319doi: 10.7717/peerj.3319.
Putnam, H. M., Adams, D. K., Zelzion, E., Wagner, N. E., Qiu, H., Mass, T., Falkowski, P. G., Gates, R. D., & Bhattacharya, D. (2017). Divergent evolutionary histories of DNA markers in a Hawaiian population of the coral . PeerJ, 5e3319. https://doi.org/10.7717/peerj.3319
Putnam, Hollie M, et al. "Divergent evolutionary histories of DNA markers in a Hawaiian population of the coral ." PeerJ vol. 5 (2017): e3319. doi: https://doi.org/10.7717/peerj.3319
Putnam HM, Adams DK, Zelzion E, Wagner NE, Qiu H, Mass T, Falkowski PG, Gates RD, Bhattacharya D. Divergent evolutionary histories of DNA markers in a Hawaiian population of the coral . PeerJ. 2017 May 18;5:e3319. doi: 10.7717/peerj.3319. eCollection 2017. PMID: 28533967; PMCID: PMC5438590.
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INTERTEMPORAL DECISION-MAKING FOR A GROUP.

The Psychological record

Yi R, King LF, Carter AE, Landes RD, Bickel WK.
PMID: 25598553
Psychol Rec. 2010;60(4):577-586. doi: 10.1007/BF03395733.

Temporal discounting assessments measure the reduction in the subjective value of a reward as a function of the delay to that reward, and are correlated with behavior in social dilemma. Among the solutions proposed for defection in social dilemmas...

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Yi R, King LF, Carter AE, et al. INTERTEMPORAL DECISION-MAKING FOR A GROUP. Psychol Rec. 2010;60(4):577-586doi: 10.1007/BF03395733.
Yi, R., King, L. F., Carter, A. E., Landes, R. D., & Bickel, W. K. (2010). INTERTEMPORAL DECISION-MAKING FOR A GROUP. The Psychological record, 60(4), 577-586. https://doi.org/10.1007/BF03395733
Yi, Richard, et al. "INTERTEMPORAL DECISION-MAKING FOR A GROUP." The Psychological record vol. 60,4 (2010): 577-586. doi: https://doi.org/10.1007/BF03395733
Yi R, King LF, Carter AE, Landes RD, Bickel WK. INTERTEMPORAL DECISION-MAKING FOR A GROUP. Psychol Rec. 2010;60(4):577-586. doi: 10.1007/BF03395733. PMID: 25598553; PMCID: PMC4295630.
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Recruitment and Retention of Smokers Versus Nonsmokers in an rTMS Study.

Journal of substance abuse and alcoholism

Sheffer CE, Brackman S, Mennemeier M, Brown G, Landes RD, Dornhoffer J, Kimbrell T, Bickel WK.
PMID: 26436136
J Subst Abus Alcohol. 2014;2(3):1019-1026.

Repetitive transcranial magnetic stimulation (rTMS) is a new frontier in the examination of addictive behaviors and perhaps the development of new interventions. This study examined differences in recruitment, eligibility, and retention among smokers and nonsmokers in an rTMS study....

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Sheffer CE, Brackman S, Mennemeier M, et al. Recruitment and Retention of Smokers Versus Nonsmokers in an rTMS Study. J Subst Abus Alcohol. 2014;2(3):1019-1026
Sheffer, C. E., Brackman, S., Mennemeier, M., Brown, G., Landes, R. D., Dornhoffer, J., Kimbrell, T., & Bickel, W. K. (2014). Recruitment and Retention of Smokers Versus Nonsmokers in an rTMS Study. Journal of substance abuse and alcoholism, 2(3), 1019-1026.
Sheffer, Christine E, et al. "Recruitment and Retention of Smokers Versus Nonsmokers in an rTMS Study." Journal of substance abuse and alcoholism vol. 2,3 (2014): 1019-1026.
Sheffer CE, Brackman S, Mennemeier M, Brown G, Landes RD, Dornhoffer J, Kimbrell T, Bickel WK. Recruitment and Retention of Smokers Versus Nonsmokers in an rTMS Study. J Subst Abus Alcohol. 2014;2(3):1019-1026. PMID: 26436136; PMCID: PMC4591542.
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Progerin, the protein responsible for the Hutchinson-Gilford progeria syndrome, increases the unrepaired DNA damages following exposure to ionizing radiation.

Genes and environment : the official journal of the Japanese Environmental Mutagen Society

Noda A, Mishima S, Hirai Y, Hamasaki K, Landes RD, Mitani H, Haga K, Kiyono T, Nakamura N, Kodama Y.
PMID: 27350809
Genes Environ. 2015 Oct 01;37:13. doi: 10.1186/s41021-015-0018-4. eCollection 2015.

INTRODUCTION: Progerin, the protein responsible for the Hutchinson-Gilford Progeria Syndrome (HGPS), is a partially deleted form of nuclear lamin A, and its expression has been suggested as a cause for dysfunctional nuclear membrane and premature senescence. To examine the...

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Noda A, Mishima S, Hirai Y, et al. Progerin, the protein responsible for the Hutchinson-Gilford progeria syndrome, increases the unrepaired DNA damages following exposure to ionizing radiation. Genes Environ. 2015;37:13doi: 10.1186/s41021-015-0018-4.
Noda, A., Mishima, S., Hirai, Y., Hamasaki, K., Landes, R. D., Mitani, H., Haga, K., Kiyono, T., Nakamura, N., & Kodama, Y. (2015). Progerin, the protein responsible for the Hutchinson-Gilford progeria syndrome, increases the unrepaired DNA damages following exposure to ionizing radiation. Genes and environment : the official journal of the Japanese Environmental Mutagen Society, 3713. https://doi.org/10.1186/s41021-015-0018-4
Noda, Asao, et al. "Progerin, the protein responsible for the Hutchinson-Gilford progeria syndrome, increases the unrepaired DNA damages following exposure to ionizing radiation." Genes and environment : the official journal of the Japanese Environmental Mutagen Society vol. 37 (2015): 13. doi: https://doi.org/10.1186/s41021-015-0018-4
Noda A, Mishima S, Hirai Y, Hamasaki K, Landes RD, Mitani H, Haga K, Kiyono T, Nakamura N, Kodama Y. Progerin, the protein responsible for the Hutchinson-Gilford progeria syndrome, increases the unrepaired DNA damages following exposure to ionizing radiation. Genes Environ. 2015 Oct 01;37:13. doi: 10.1186/s41021-015-0018-4. eCollection 2015. PMID: 27350809; PMCID: PMC4917958.
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Reduced-size polarized basis sets for calculations of molecular electric properties. I. The basis set generation.

Journal of computational chemistry

Benkova Z, Sadlej AJ, Oakes RE, Bell SE.
PMID: 15584074
J Comput Chem. 2005 Jan 30;26(2):145-53. doi: 10.1002/jcc.20149.

Following the recent studies of basis sets explicitly dependent on oscillatory external electric field we have investigated the possibility of some further truncation of the so-called polarized basis sets without any major deterioration of the computed data for molecular...

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Benkova Z, Sadlej AJ, Oakes RE, et al. Reduced-size polarized basis sets for calculations of molecular electric properties. I. The basis set generation. J Comput Chem. 2005;26(2):145-53doi: 10.1002/jcc.20149.
Benkova, Z., Sadlej, A. J., Oakes, R. E., & Bell, S. E. (2005). Reduced-size polarized basis sets for calculations of molecular electric properties. I. The basis set generation. Journal of computational chemistry, 26(2), 145-53. https://doi.org/10.1002/jcc.20149
Benkova, Zuzana, et al. "Reduced-size polarized basis sets for calculations of molecular electric properties. I. The basis set generation." Journal of computational chemistry vol. 26,2 (2005): 145-53. doi: https://doi.org/10.1002/jcc.20149
Benkova Z, Sadlej AJ, Oakes RE, Bell SE. Reduced-size polarized basis sets for calculations of molecular electric properties. I. The basis set generation. J Comput Chem. 2005 Jan 30;26(2):145-53. doi: 10.1002/jcc.20149. PMID: 15584074.
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Harmonic Analysis and H-Functions on Siegel Domains of Type II.

Proceedings of the National Academy of Sciences of the United States of America

Ogden RD, Vági S.
PMID: 16591961
Proc Natl Acad Sci U S A. 1972 Jan;69(1):11-4. doi: 10.1073/pnas.69.1.11.

It is known that the distinguished boundary of a Siegel domain of type II can be identified with a simply connected nilpotent Lie group of step two. The Plancherel formula for this group and the irreducible unitary representations which...

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Ogden RD, Vági S. Harmonic Analysis and H-Functions on Siegel Domains of Type II. Proc Natl Acad Sci U S A. 1972;69(1):11-4doi: 10.1073/pnas.69.1.11.
Ogden, R. D., & Vági, S. (1972). Harmonic Analysis and H-Functions on Siegel Domains of Type II. Proceedings of the National Academy of Sciences of the United States of America, 69(1), 11-4. https://doi.org/10.1073/pnas.69.1.11
Ogden, R D, and Vági, S. "Harmonic Analysis and H-Functions on Siegel Domains of Type II." Proceedings of the National Academy of Sciences of the United States of America vol. 69,1 (1972): 11-4. doi: https://doi.org/10.1073/pnas.69.1.11
Ogden RD, Vági S. Harmonic Analysis and H-Functions on Siegel Domains of Type II. Proc Natl Acad Sci U S A. 1972 Jan;69(1):11-4. doi: 10.1073/pnas.69.1.11. PMID: 16591961; PMCID: PMC427533.
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Physicians' and Nurses' Own Health Practices: A survey.

Canadian family physician Medecin de famille canadien

Janes RD, Wilson DM, Singer J.
PMID: 21221254
Can Fam Physician. 1992 Feb;38:277-83.

We sent an anonymous self-report questionnaire on personal health practices to 141 nurses, 72 family physicians, and 171 specialists in the greater Hamilton area. All groups had similar lifestyle behaviors; differences between groups and between men and women were...

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Janes RD, Wilson DM, Singer J. Physicians' and Nurses' Own Health Practices: A survey. Can Fam Physician. 1992;38:277-83
Janes, R. D., Wilson, D. M., & Singer, J. (1992). Physicians' and Nurses' Own Health Practices: A survey. Canadian family physician Medecin de famille canadien, 38277-83.
Janes, R D, et al. "Physicians' and Nurses' Own Health Practices: A survey." Canadian family physician Medecin de famille canadien vol. 38 (1992): 277-83.
Janes RD, Wilson DM, Singer J. Physicians' and Nurses' Own Health Practices: A survey. Can Fam Physician. 1992 Feb;38:277-83. PMID: 21221254; PMCID: PMC2145436.
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Elasticity theory for self-assembled protein lattices with application to the martensitic phase transition in bacteriophage T4 tail sheath.

Physical review. E, Statistical, nonlinear, and soft matter physics

Falk W, James RD.
PMID: 16486195
Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Jan;73(1):011917. doi: 10.1103/PhysRevE.73.011917. Epub 2006 Jan 27.

We propose an elasticity theory for one- and two-dimensional arrays of globular proteins for which the free energy is affected by relative position and relative rotation between neighboring molecules. The kinematics of such assemblies is described, the conditions of...

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Falk W, James RD. Elasticity theory for self-assembled protein lattices with application to the martensitic phase transition in bacteriophage T4 tail sheath. Phys Rev E Stat Nonlin Soft Matter Phys. 2006;73(1):011917doi: 10.1103/PhysRevE.73.011917.
Falk, W., & James, R. D. (2006). Elasticity theory for self-assembled protein lattices with application to the martensitic phase transition in bacteriophage T4 tail sheath. Physical review. E, Statistical, nonlinear, and soft matter physics, 73(1), 011917. https://doi.org/10.1103/PhysRevE.73.011917
Falk, Wayne, and James, Richard D. "Elasticity theory for self-assembled protein lattices with application to the martensitic phase transition in bacteriophage T4 tail sheath." Physical review. E, Statistical, nonlinear, and soft matter physics vol. 73,1 (2006): 011917. doi: https://doi.org/10.1103/PhysRevE.73.011917
Falk W, James RD. Elasticity theory for self-assembled protein lattices with application to the martensitic phase transition in bacteriophage T4 tail sheath. Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Jan;73(1):011917. doi: 10.1103/PhysRevE.73.011917. Epub 2006 Jan 27. PMID: 16486195.
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Antipsychotic Adherence Intervention for Veterans over 40 with Schizophrenia: Results of a Pilot Study.

Clinical schizophrenia & related psychoses

Mittal D, Owen RR, Lacro JP, D P, Landes RD, Edlund M, Valenstein M, Jeste DV.
PMID: 20463858
Clin Schizophr Relat Psychoses. 2009 Jan 01;24:S1171. doi: 10.1016/S0924-9338(09)71404-X.

This pilot study tested the feasibility, acceptability, and effect-sizes of a multimodal, individual intervention designed to optimize antipsychotic medication use in patients >/=40 years of age with schizophrenia or schizoaffective disorder. METHODS: We randomized 40 patients into two groups:...

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Mittal D, Owen RR, Lacro JP, et al. Antipsychotic Adherence Intervention for Veterans over 40 with Schizophrenia: Results of a Pilot Study. Clin Schizophr Relat Psychoses. 2009;24:S1171doi: 10.1016/S0924-9338(09)71404-X.
Mittal, D., Owen, R. R., Lacro, J. P., D, P., Landes, R. D., Edlund, M., Valenstein, M., & Jeste, D. V. (2009). Antipsychotic Adherence Intervention for Veterans over 40 with Schizophrenia: Results of a Pilot Study. Clinical schizophrenia & related psychoses, 24S1171. https://doi.org/10.1016/S0924-9338(09)71404-X
Mittal, Dinesh, et al. "Antipsychotic Adherence Intervention for Veterans over 40 with Schizophrenia: Results of a Pilot Study." Clinical schizophrenia & related psychoses vol. 24 (2009): S1171. doi: https://doi.org/10.1016/S0924-9338(09)71404-X
Mittal D, Owen RR, Lacro JP, D P, Landes RD, Edlund M, Valenstein M, Jeste DV. Antipsychotic Adherence Intervention for Veterans over 40 with Schizophrenia: Results of a Pilot Study. Clin Schizophr Relat Psychoses. 2009 Jan 01;24:S1171. doi: 10.1016/S0924-9338(09)71404-X. PMID: 20463858; PMCID: PMC2867602.
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The distribution of the thermally tolerant symbiont lineage (Symbiodinium clade D) in corals from Hawaii: correlations with host and the history of ocean thermal stress.

Ecology and evolution

Stat M, Pochon X, Franklin EC, Bruno JF, Casey KS, Selig ER, Gates RD.
PMID: 23762518
Ecol Evol. 2013 May;3(5):1317-29. doi: 10.1002/ece3.556. Epub 2013 Apr 09.

Spatially intimate symbioses, such as those between scleractinian corals and unicellular algae belonging to the genus Symbiodinium, can potentially adapt to changes in the environment by altering the taxonomic composition of their endosymbiont communities. We quantified the spatial relationship...

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Stat M, Pochon X, Franklin EC, et al. The distribution of the thermally tolerant symbiont lineage (Symbiodinium clade D) in corals from Hawaii: correlations with host and the history of ocean thermal stress. Ecol Evol. 2013;3(5):1317-29doi: 10.1002/ece3.556.
Stat, M., Pochon, X., Franklin, E. C., Bruno, J. F., Casey, K. S., Selig, E. R., & Gates, R. D. (2013). The distribution of the thermally tolerant symbiont lineage (Symbiodinium clade D) in corals from Hawaii: correlations with host and the history of ocean thermal stress. Ecology and evolution, 3(5), 1317-29. https://doi.org/10.1002/ece3.556
Stat, Michael, et al. "The distribution of the thermally tolerant symbiont lineage (Symbiodinium clade D) in corals from Hawaii: correlations with host and the history of ocean thermal stress." Ecology and evolution vol. 3,5 (2013): 1317-29. doi: https://doi.org/10.1002/ece3.556
Stat M, Pochon X, Franklin EC, Bruno JF, Casey KS, Selig ER, Gates RD. The distribution of the thermally tolerant symbiont lineage (Symbiodinium clade D) in corals from Hawaii: correlations with host and the history of ocean thermal stress. Ecol Evol. 2013 May;3(5):1317-29. doi: 10.1002/ece3.556. Epub 2013 Apr 09. PMID: 23762518; PMCID: PMC3678486.
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Showing 1 to 12 of 156 entries